Pbdc1-ps3 (polysaccharide biosynthesis domain containing 1, pseudogene 3) - Rat Genome Database

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Gene: Pbdc1-ps3 (polysaccharide biosynthesis domain containing 1, pseudogene 3) Rattus norvegicus
Analyze
Symbol: Pbdc1-ps3
Name: polysaccharide biosynthesis domain containing 1, pseudogene 3
RGD ID: 6490462
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: hypothetical LOC100362976; LOC100362976; LOC100911810; UPF0368 protein Cxorf26 homolog
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81140,344,895 - 40,348,778 (-)NCBIGRCr8
mRatBN7.21126,858,947 - 26,862,536 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01127,431,940 - 27,449,070 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01131,052,108 - 31,055,697 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41127,384,170 - 27,426,505 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1126,602,803 - 26,619,936 (-)NCBICelera
Cytogenetic Map11q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Pbdc1-ps3
31 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)111945620576331918Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-22045 BioCyc
NCBI Gene LOC100911810 ENTREZGENE
PhenoGen Pbdc1-ps3 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Pbdc1-ps3  polysaccharide biosynthesis domain containing 1, pseudogene 3  LOC100911810  UPF0368 protein Cxorf26 homolog  Symbol and Name Changed 1299863 APPROVED
2021-03-09 LOC100911810  UPF0368 protein Cxorf26 homolog  LOC100362976  hypothetical LOC100362976  Data merged from RGD:2323717 737654 PROVISIONAL
2012-07-05 LOC100911810  UPF0368 protein Cxorf26 homolog      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-05-06 LOC100362976  hypothetical LOC100362976      Symbol and Name status set to provisional 70820 PROVISIONAL