Pcmt1 (protein-L-isoaspartate (D-aspartate) O-methyltransferase) - Rat Genome Database

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Gene: Pcmt1 (protein-L-isoaspartate (D-aspartate) O-methyltransferase) Rattus rattus
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Symbol: Pcmt1
Name: protein-L-isoaspartate (D-aspartate) O-methyltransferase
RGD ID: 625904115
Description: ENCODES a protein that exhibits protein-L-isoaspartate (D-aspartate) O-methyltransferase activity (ortholog); S-adenosylmethionine-dependent methyltransferase activity (ortholog); S-methyltransferase activity (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); cellular response to pH (ortholog); negative regulation of cardiac muscle cell apoptotic process (ortholog); PARTICIPATES IN homocysteine metabolic pathway; methionine cycle/metabolic pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); Alzheimer's disease (ortholog); Aortic Injuries (ortholog); FOUND IN basolateral plasma membrane (ortholog); brush border membrane (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein-L-isoaspartate(D-aspartate) O-methyltransferase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Rrattus_CSIRO_v1 - Rrattus_CSIRO_v1 Assembly
Position:
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12229,364,327 - 229,412,691 (+)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pcmt1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12229,364,327 - 229,412,691 (+)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1
PCMT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386149,749,695 - 149,811,421 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6149,749,197 - 149,811,422 (+)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh376150,070,831 - 150,132,557 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366150,112,658 - 150,174,249 (+)NCBIBuild 36Build 36hg18NCBI36
Build 346150,163,078 - 150,224,670NCBI
Celera6150,806,092 - 150,867,242 (+)NCBICelera
Cytogenetic Map6q25.1NCBI
HuRef6147,636,598 - 147,698,401 (+)NCBIHuRef
CHM1_16150,335,452 - 150,397,161 (+)NCBICHM1_1
T2T-CHM13v2.06150,949,463 - 151,010,794 (+)NCBIT2T-CHM13v2.0
Pcmt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39107,503,608 - 7,556,922 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl107,503,611 - 7,556,900 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38107,627,845 - 7,681,337 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl107,629,373 - 7,681,136 (-)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv37107,350,034 - 7,383,382 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36107,320,426 - 7,353,440 (-)NCBIMGSCv36mm8
Celera107,508,777 - 7,541,151 (-)NCBICelera
Cytogenetic Map10A1NCBI
cM Map102.26NCBI
Pcmt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813,932,161 - 3,980,751 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl13,932,161 - 3,964,848 (-)EnsemblGRCr8
mRatBN7.212,111,756 - 2,160,354 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl12,111,763 - 2,159,201 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx11,761,587 - 1,794,261 (-)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.017,761,985 - 7,794,661 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.012,043,688 - 2,076,362 (-)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd13,401,070 - 3,433,938 (-)NCBI
Lyon_Normotensive12,718,554 - 2,751,422 (-)NCBI
Lyon_Hypertensive13,884,687 - 3,917,555 (-)NCBI
F344_StmMcwi12,272,346 - 2,305,206 (-)NCBI
Rnor_6.011,734,863 - 1,767,759 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl11,736,276 - 1,767,618 (-)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.013,432,543 - 3,464,945 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.412,287,981 - 2,304,638 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1659,884 - 692,976 (-)NCBICelera
RGSC_v3.112,287,981 - 2,304,638 (-)NCBI
Cytogenetic Map1p13NCBI
Pcmt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543911,480,101 - 11,531,839 (-)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_00495543911,480,094 - 11,531,842 (-)NCBIChiLan1.0ChiLan1.0
PCMT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25169,770,737 - 169,829,864 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16167,664,782 - 167,723,466 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06147,564,783 - 147,623,402 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16152,271,206 - 152,329,221 (+)NCBIPanPan1.1PanPan1.1panPan2
PCMT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1140,494,441 - 40,539,453 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl140,494,461 - 40,538,937 (+)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha141,333,804 - 41,378,660 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0140,676,439 - 40,721,295 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl140,676,146 - 40,722,403 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1140,552,247 - 40,597,034 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0140,418,203 - 40,463,029 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0140,758,673 - 40,803,514 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pcmt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap1816,421,158 - 16,460,475 (-)NCBImIctTri1.hap1
HiC_Itri_2NW_024404946135,425,633 - 135,470,265 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364892,677,484 - 2,722,263 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364892,677,740 - 2,720,387 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCMT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl116,198,223 - 16,249,531 (-)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.1116,202,859 - 16,249,879 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2118,440,912 - 18,462,186 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PCMT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap11378,801,216 - 78,860,869 (+)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_023666040197,839,664 - 197,899,385 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.11321,808,583 - 21,867,309 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1321,807,710 - 21,866,768 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Pcmt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247858,267,328 - 8,326,550 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_0046247858,263,113 - 8,326,549 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Naked mole-rat maternal Ensembl173,746,306 - 73,803,968 (-)Ensembl


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_032895006   ⟹   XP_032750897
Type: CODING
Position:
Black Rat AssemblyChrPosition (strand)Source
Rrattus_CSIRO_v12229,380,186 - 229,412,683 (+)NCBI
RefSeq Acc Id: XM_032895007   ⟹   XP_032750898
Type: CODING
Position:
Black Rat AssemblyChrPosition (strand)Source
Rrattus_CSIRO_v12229,380,188 - 229,412,683 (+)NCBI
RefSeq Acc Id: XM_032895008   ⟹   XP_032750899
Type: CODING
Position:
Black Rat AssemblyChrPosition (strand)Source
Rrattus_CSIRO_v12229,380,176 - 229,412,691 (+)NCBI
RefSeq Acc Id: XM_032895009   ⟹   XP_032750900
Type: CODING
Position:
Black Rat AssemblyChrPosition (strand)Source
Rrattus_CSIRO_v12229,391,283 - 229,412,683 (+)NCBI
RefSeq Acc Id: XM_032895010   ⟹   XP_032750901
Type: CODING
Position:
Black Rat AssemblyChrPosition (strand)Source
Rrattus_CSIRO_v12229,364,327 - 229,412,683 (+)NCBI
RefSeq Acc Id: XP_032750901   ⟸   XM_032895010
- Peptide Label: isoform X4
RefSeq Acc Id: XP_032750899   ⟸   XM_032895008
- Peptide Label: isoform X3
RefSeq Acc Id: XP_032750897   ⟸   XM_032895006
- Peptide Label: isoform X1
RefSeq Acc Id: XP_032750898   ⟸   XM_032895007
- Peptide Label: isoform X2
RefSeq Acc Id: XP_032750900   ⟸   XM_032895009
- Peptide Label: isoform X4


Additional Information

Database Acc Id Source(s)
NCBI Gene Pcmt1 ENTREZGENE