Cd63 (CD63 antigen) - Rat Genome Database

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Gene: Cd63 (CD63 antigen) Mus musculus
Analyze
Symbol: Cd63
Name: CD63 antigen
RGD ID: 62372
MGI Page MGI
Description: Involved in pigment cell differentiation and regulation of vascular endothelial growth factor signaling pathway. Located in late endosome and lysosome. Is expressed in blood vessel; brain; eye anterior segment; and intestine. Orthologous to human CD63 (CD63 molecule).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C75951; ME491; melanoma 1 antigen; MGC103180; MGC107286; Tsp; Tspan30
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910128,731,577 - 128,748,691 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10128,736,858 - 128,748,691 (+)EnsemblGRCm39 Ensembl
GRCm3810128,896,231 - 128,912,822 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10128,900,989 - 128,912,822 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710128,345,975 - 128,349,878 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610128,312,873 - 128,315,771 (+)NCBIMGSCv36mm8
Celera10131,301,602 - 131,305,504 (+)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1077.19NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2-methylcholine  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
5-fluorouracil  (ISO)
acetamide  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
Ampullosporin  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
ceric oxide  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (EXP)
choline  (EXP)
ciguatoxin CTX1B  (EXP)
ciprofibrate  (EXP)
cisplatin  (ISO)
clozapine  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (ISO)
cycloheximide  (ISO)
cyclosporin A  (ISO)
dibenz[a,h]anthracene  (ISO)
dibutyl phthalate  (ISO)
dioxygen  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (EXP)
fenamidone  (EXP)
fenbuconazole  (ISO)
flavonoids  (ISO)
folic acid  (EXP)
fumonisin B1  (EXP)
gentamycin  (ISO)
glyphosate  (ISO)
hexachlorobenzene  (ISO)
hydralazine  (ISO)
inulin  (EXP)
isobutanol  (ISO)
ivermectin  (ISO)
ketamine  (ISO)
L-methionine  (EXP)
lead diacetate  (ISO)
lead(0)  (ISO)
metformin  (ISO)
methylmercury(1+)  (ISO)
N-formyl-L-methionyl-L-leucyl-L-phenylalanine  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
N-nitrosodiethylamine  (EXP,ISO)
N-nitrosodimethylamine  (ISO)
ozone  (EXP,ISO)
paracetamol  (EXP)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
phenformin  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP,ISO)
pyrene  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (EXP,ISO)
SB 203580  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP)
sodium arsenite  (ISO)
Soman  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP,ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP,ISO)
trichloroethene  (ISO)
triphenyl phosphate  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)
Yessotoxin  (ISO)
zinc oxide  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Platelet degranulation is associated with progression of intima-media thickness of the common carotid artery in patients with diabetes mellitus type 2. Fateh-Moghadam S, etal., Arterioscler Thromb Vasc Biol. 2005 Jun;25(6):1299-303. Epub 2005 Apr 7.
2. Molecular cloning and characterization of an antigen associated with early stages of melanoma tumor progression. Hotta H, etal., Cancer Res 1988 Jun 1;48(11):2955-62.
3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. Platelet activation in diabetic cardiovascular autonomic neuropathy. Rauch U, etal., Diabet Med. 1999 Oct;16(10):848-52.
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Mammalian late vacuole protein sorting orthologues participate in early endosomal fusion and interact with the cytoskeleton. Richardson SC, etal., Mol Biol Cell 2004 Mar;15(3):1197-210. Epub 2003 Dec 10.
12. Levels and value of platelet activation markers in different subtypes of acute non-cardio-embolic ischemic stroke. Tsai NW, etal., Thromb Res. 2009 Jun;124(2):213-8. Epub 2009 Feb 23.
Additional References at PubMed
PMID:8039242   PMID:8070621   PMID:8148377   PMID:8661157   PMID:9782088   PMID:9808778   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11180952   PMID:11217851  
PMID:12477932   PMID:12904583   PMID:14610273   PMID:15226823   PMID:15229288   PMID:15459106   PMID:15489334   PMID:15647390   PMID:15747579   PMID:15782199   PMID:16054021   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:16683915   PMID:16837549   PMID:17043215   PMID:17513769   PMID:17708745   PMID:19075008   PMID:19079288   PMID:19906978   PMID:20236428   PMID:21041449  
PMID:21267068   PMID:21270405   PMID:21677750   PMID:21803846   PMID:21862448   PMID:21873635   PMID:21962903   PMID:23632027   PMID:23945142   PMID:24154525   PMID:25354204   PMID:27435297  
PMID:27506299   PMID:27531610   PMID:27542690   PMID:28031320   PMID:31286822   PMID:31346174   PMID:31515491   PMID:32325033   PMID:32866472   PMID:35304471   PMID:37364689   PMID:37723209  
PMID:37839992  


Genomics

Comparative Map Data
Cd63
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910128,731,577 - 128,748,691 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10128,736,858 - 128,748,691 (+)EnsemblGRCm39 Ensembl
GRCm3810128,896,231 - 128,912,822 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10128,900,989 - 128,912,822 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710128,345,975 - 128,349,878 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610128,312,873 - 128,315,771 (+)NCBIMGSCv36mm8
Celera10131,301,602 - 131,305,504 (+)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1077.19NCBI
CD63
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381255,723,535 - 55,730,041 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1255,725,323 - 55,729,707 (-)EnsemblGRCh38hg38GRCh38
GRCh371256,117,319 - 56,123,825 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361254,405,497 - 54,409,177 (-)NCBINCBI36Build 36hg18NCBI36
Build 341254,405,519 - 54,409,076NCBI
Celera1255,771,700 - 55,775,380 (-)NCBICelera
Cytogenetic Map12q13.2NCBI
HuRef1253,158,042 - 53,162,273 (-)NCBIHuRef
CHM1_11256,086,015 - 56,090,245 (-)NCBICHM1_1
T2T-CHM13v2.01255,690,169 - 55,696,675 (-)NCBIT2T-CHM13v2.0
Cd63
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr871,909,538 - 1,924,937 (+)NCBIGRCr8
mRatBN7.271,325,108 - 1,340,447 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl71,325,103 - 1,399,178 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx74,101,932 - 4,104,722 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.075,977,592 - 5,980,382 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.076,278,877 - 6,281,670 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.073,320,250 - 3,335,583 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl73,320,103 - 3,335,582 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.073,303,449 - 3,305,798 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.472,208,659 - 2,211,323 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.172,208,658 - 2,211,327 (+)NCBI
Celera71,208,422 - 1,211,249 (+)NCBICelera
Cytogenetic Map7q11NCBI
Cd63
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554583,362,511 - 3,363,981 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554583,362,511 - 3,363,916 (-)NCBIChiLan1.0ChiLan1.0
CD63
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21038,598,539 - 38,602,812 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11238,595,374 - 38,599,608 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01233,181,896 - 33,186,123 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11233,906,343 - 33,910,595 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1233,906,314 - 33,910,595 (+)Ensemblpanpan1.1panPan2
CD63
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.110126,370 - 139,301 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl10126,449 - 129,742 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha10188,764 - 191,664 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.010133,644 - 136,544 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl10133,723 - 136,510 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.110111,323 - 114,223 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.010354,435 - 357,335 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.010478,330 - 481,230 (-)NCBIUU_Cfam_GSD_1.0
Cd63
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494558,671,044 - 58,674,233 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936646191,128 - 199,777 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936646196,002 - 199,177 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD63
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl521,172,283 - 21,176,232 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1521,172,275 - 21,176,225 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2522,652,127 - 22,656,077 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CD63
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11151,673,402 - 51,677,075 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1151,672,740 - 51,676,301 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037194,317,476 - 194,321,231 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd63
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480212,290,688 - 12,342,733 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480212,290,733 - 12,294,293 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cd63
404 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:274
Count of miRNA genes:131
Interacting mature miRNAs:137
Transcripts:ENSMUST00000026407, ENSMUST00000105229
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142461Bmd25_mbone mineral density 25 (mouse)Not determined1097217101130530862Mouse
1301968Estq4_mestradiol regulated response QTL 4 (mouse)Not determined10100986516130530862Mouse
12904000Opfaq7_mopen field activity QTL 7 (mouse)10127746318129466375Mouse
12904001Opfaq10_mopen field activity QTL 10 (mouse)10125633671129466375Mouse
12879490Frct3_mfear conditioning traits 3 (mouse)10122785970129466996Mouse
11049570Lmr25b_mleishmaniasis resistance 25b (mouse)10108575094130530862Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
11533921Mvb2_mmodifier of vibrator 2 (mouse)1097217101130530862Mouse
4141361Cfmq3_mcystic fibrosis modifier QTL 3 (mouse)Not determined10101497164130530862Mouse
4141487Tgq21_mtriglyceride QTL 21 (mouse)Not determined104110021130530862Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
1301895Exq1_mexploratory and excitability QTL 1 (mouse)Not determined10102847852130530862Mouse
1300679Nociq2_mnociceptive sensitivity inflammatory QTL 2 (mouse)Not determined10105041304130530862Mouse
1300678Leg2_mlongevity extending gene 2 (mouse)Not determined10102506908130530862Mouse
14746996Manh69_mmandible shape 69 (mouse)10104763638130530862Mouse
12880413V125Dq9_mvitamin D active form serum level QTL 9 (mouse)1097535905130530862Mouse
1301901Im5_mimmunoregulatory 5 (mouse)Not determined10101497164130530862Mouse
4141153Ltgq2_mliver triglyceride QTL 2 (mouse)Not determined108515907130530862Mouse
11039496Ltpr5b_mLeishmania tropica response 5b (mouse)10108575094130530862Mouse
1357744Cfbw4_mcystic fibrosis body weight 4 (mouse)Not determined10100986516130530862Mouse
4141402T2dm1sa_mtype 2 diabetes mellitus 1 in SMXA RI mice (mouse)Not determined97758644130530862Mouse
11041664Lmr25_mleishmaniasis resistance 25 (mouse)10108575094130530862Mouse
1302200Sle12_msystematic lupus erythematosus susceptibility 12 (mouse)Not determined10105041304130530862Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
11533919Mvb4_mmodifier of vibrator 4 (mouse)397217101130530862Mouse
4141007Obrq10_mobesity resistance QTL 10 (mouse)Not determined103243727130530862Mouse
12911221Frct3d_mfear conditioning traits 3d (mouse)10127675574129466996Mouse
12911220Frct3c_mfear conditioning traits 3c (mouse)10122785970129466996Mouse
11049563Lmr25a_mleishmaniasis resistance 25a (mouse)10108575094130530862Mouse
4142089Obrq9_mobesity resistance QTL 9 (mouse)Not determined108515907130530862Mouse
12911219Frct3b_mfear conditioning traits 3b (mouse)10127675574129466996Mouse
14696727Kidrq2_mkidney weight, right QTL 2 (mouse)10102902508130530862Mouse
12911218Frct3a_mfear conditioning traits 3a (mouse)10122785970129466996Mouse
11040593Lmr5e_mleishmaniasis resistance 5e (mouse)1099220635130530862Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
11040594Lmr5f_mleishmaniasis resistance 5f (mouse)10105179713130530862Mouse
11040595Lmr5c_mleishmaniasis resistance 5c (mouse)1099220635130530862Mouse
1357544Vtbt10_mvertebral trabecular bone trait 10 (mouse)Not determined1097217101130530862Mouse
11040596Lmr5d_mleishmaniasis resistance 5d (mouse)10105179713130530862Mouse
11040597Lmr5a_mleishmaniasis resistance 5a (mouse)1099220635130530862Mouse
1357482Nhdlq4_mnon-HDL QTL 4 (mouse)Not determined10105041304130530862Mouse
11040598Lmr5b_mleishmaniasis resistance 5b (mouse)10105179713130530862Mouse

Markers in Region
RH126796  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381850,135,373 - 50,135,577UniSTSGRCm38
GRCm3810128,912,449 - 128,912,806UniSTSGRCm38
MGSCv3710128,349,505 - 128,349,862UniSTSGRCm37
MGSCv371850,295,027 - 50,295,231UniSTSGRCm37
Celera1851,467,805 - 51,468,009UniSTS
Celera10131,305,131 - 131,305,488UniSTS
Cytogenetic Map18D1UniSTS
Cytogenetic Map10D3UniSTS
cM Map1827.24UniSTS
cM Map1072.0UniSTS
RH125938  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381850,135,308 - 50,135,556UniSTSGRCm38
GRCm3810128,912,248 - 128,912,785UniSTSGRCm38
MGSCv3710128,349,304 - 128,349,841UniSTSGRCm37
MGSCv371850,294,962 - 50,295,210UniSTSGRCm37
Celera1851,467,740 - 51,467,988UniSTS
Celera10131,304,930 - 131,305,467UniSTS
Cytogenetic Map18D1UniSTS
Cytogenetic Map10D3UniSTS
cM Map1827.24UniSTS
cM Map1072.0UniSTS
Whitehead/MRC_RH18720.85UniSTS
RH139213  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810128,911,507 - 128,911,831UniSTSGRCm38
MGSCv3710128,348,563 - 128,348,887UniSTSGRCm37
Celera1851,467,130 - 51,467,518UniSTS
Celera10131,304,190 - 131,304,514UniSTS
Cytogenetic Map18D1UniSTS
Cytogenetic Map10D3UniSTS
cM Map1827.24UniSTS
cM Map1072.0UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001042580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001282966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF159427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC012212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC083161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP769648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY164291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF355016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ210573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT010179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D16432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000026407   ⟹   ENSMUSP00000026407
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10128,745,568 - 128,748,684 (+)Ensembl
GRCm38.p6 Ensembl10128,909,699 - 128,912,815 (+)Ensembl
Ensembl Acc Id: ENSMUST00000105229   ⟹   ENSMUSP00000100862
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10128,744,689 - 128,748,691 (+)Ensembl
GRCm38.p6 Ensembl10128,908,820 - 128,912,822 (+)Ensembl
Ensembl Acc Id: ENSMUST00000218450
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10128,746,491 - 128,747,932 (+)Ensembl
GRCm38.p6 Ensembl10128,910,622 - 128,912,063 (+)Ensembl
Ensembl Acc Id: ENSMUST00000219317   ⟹   ENSMUSP00000151313
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10128,736,858 - 128,748,691 (+)Ensembl
GRCm38.p6 Ensembl10128,900,989 - 128,912,822 (+)Ensembl
Ensembl Acc Id: ENSMUST00000220245
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10128,745,791 - 128,748,684 (+)Ensembl
GRCm38.p6 Ensembl10128,909,922 - 128,912,815 (+)Ensembl
Ensembl Acc Id: ENSMUST00000220308   ⟹   ENSMUSP00000151955
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10128,745,214 - 128,748,096 (+)Ensembl
GRCm38.p6 Ensembl10128,909,345 - 128,912,227 (+)Ensembl
RefSeq Acc Id: NM_001042580   ⟹   NP_001036045
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910128,744,788 - 128,748,691 (+)NCBI
GRCm3810128,908,919 - 128,912,822 (+)ENTREZGENE
MGSCv3710128,345,975 - 128,349,878 (+)RGD
Celera10131,301,602 - 131,305,504 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001282966   ⟹   NP_001269895
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910128,745,214 - 128,748,691 (+)NCBI
GRCm3810128,909,345 - 128,912,822 (+)NCBI
Celera10131,301,602 - 131,305,504 (+)NCBI
Sequence:
RefSeq Acc Id: NM_007653   ⟹   NP_031679
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910128,745,735 - 128,748,691 (+)NCBI
GRCm3810128,909,866 - 128,912,822 (+)NCBI
MGSCv3710128,345,975 - 128,349,878 (+)RGD
Celera10131,301,602 - 131,305,504 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030244851   ⟹   XP_030100711
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910128,732,105 - 128,748,691 (+)NCBI
GRCm3810128,896,236 - 128,912,822 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244852   ⟹   XP_030100712
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910128,732,100 - 128,748,691 (+)NCBI
GRCm3810128,896,231 - 128,912,822 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155570   ⟹   XP_036011463
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910128,731,577 - 128,748,691 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001036045 (Get FASTA)   NCBI Sequence Viewer  
  NP_001269895 (Get FASTA)   NCBI Sequence Viewer  
  NP_001415337 (Get FASTA)   NCBI Sequence Viewer  
  NP_001415338 (Get FASTA)   NCBI Sequence Viewer  
  NP_031679 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100711 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100712 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011463 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD43135 (Get FASTA)   NCBI Sequence Viewer  
  AAH08108 (Get FASTA)   NCBI Sequence Viewer  
  AAH12212 (Get FASTA)   NCBI Sequence Viewer  
  AAH83161 (Get FASTA)   NCBI Sequence Viewer  
  BAA03904 (Get FASTA)   NCBI Sequence Viewer  
  BAC25821 (Get FASTA)   NCBI Sequence Viewer  
  BAE27307 (Get FASTA)   NCBI Sequence Viewer  
  BAE29734 (Get FASTA)   NCBI Sequence Viewer  
  BAE30625 (Get FASTA)   NCBI Sequence Viewer  
  BAE30834 (Get FASTA)   NCBI Sequence Viewer  
  BAE30925 (Get FASTA)   NCBI Sequence Viewer  
  BAE31162 (Get FASTA)   NCBI Sequence Viewer  
  BAE35447 (Get FASTA)   NCBI Sequence Viewer  
  BAE37493 (Get FASTA)   NCBI Sequence Viewer  
  BAE38843 (Get FASTA)   NCBI Sequence Viewer  
  BAE39004 (Get FASTA)   NCBI Sequence Viewer  
  BAE41734 (Get FASTA)   NCBI Sequence Viewer  
  CAJ18387 (Get FASTA)   NCBI Sequence Viewer  
  EDL24631 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000026407
  ENSMUSP00000026407.8
  ENSMUSP00000100862
  ENSMUSP00000100862.2
  ENSMUSP00000151313.2
  ENSMUSP00000151955.2
GenBank Protein P41731 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001036045   ⟸   NM_001042580
- UniProtKB: P41731 (UniProtKB/Swiss-Prot),   Q3UC80 (UniProtKB/TrEMBL),   Q549D0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_031679   ⟸   NM_007653
- UniProtKB: P41731 (UniProtKB/Swiss-Prot),   Q3UC80 (UniProtKB/TrEMBL),   Q549D0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001269895   ⟸   NM_001282966
- UniProtKB: P41731 (UniProtKB/Swiss-Prot),   Q3UC80 (UniProtKB/TrEMBL),   Q549D0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030100712   ⟸   XM_030244852
- Peptide Label: isoform X1
- UniProtKB: P41731 (UniProtKB/Swiss-Prot),   Q549D0 (UniProtKB/TrEMBL),   Q3UC80 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030100711   ⟸   XM_030244851
- Peptide Label: isoform X1
- UniProtKB: P41731 (UniProtKB/Swiss-Prot),   Q549D0 (UniProtKB/TrEMBL),   Q3UC80 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000100862   ⟸   ENSMUST00000105229
Ensembl Acc Id: ENSMUSP00000026407   ⟸   ENSMUST00000026407
Ensembl Acc Id: ENSMUSP00000151313   ⟸   ENSMUST00000219317
Ensembl Acc Id: ENSMUSP00000151955   ⟸   ENSMUST00000220308
RefSeq Acc Id: XP_036011463   ⟸   XM_036155570
- Peptide Label: isoform X1
- UniProtKB: P41731 (UniProtKB/Swiss-Prot),   Q549D0 (UniProtKB/TrEMBL),   Q3UC80 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P41731-F1-model_v2 AlphaFold P41731 1-238 view protein structure

Promoters
RGD ID:6819092
Promoter ID:MM_KWN:6032
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_007653
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3610128,346,196 - 128,347,047 (+)MPROMDB
RGD ID:8673676
Promoter ID:EPDNEW_M14869
Type:initiation region
Name:Cd63_2
Description:Mus musculus CD63 antigen , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14870  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3810128,909,014 - 128,909,074EPDNEW
RGD ID:8673678
Promoter ID:EPDNEW_M14870
Type:initiation region
Name:Cd63_1
Description:Mus musculus CD63 antigen , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14869  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3810128,909,906 - 128,909,966EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:99529 AgrOrtholog
Ensembl Genes ENSMUSG00000025351 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000026407 ENTREZGENE
  ENSMUST00000026407.9 UniProtKB/Swiss-Prot
  ENSMUST00000105229 ENTREZGENE
  ENSMUST00000105229.9 UniProtKB/Swiss-Prot
  ENSMUST00000219317.2 UniProtKB/Swiss-Prot
  ENSMUST00000220308.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1450.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CD63_LEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tetraspanin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tetraspanin/Peripherin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tetraspanin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tetraspanin_EC2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12512 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:99529 ENTREZGENE
NCBI Gene 12512 ENTREZGENE
PANTHER CD63 ANTIGEN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR19282 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Tetraspanin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cd63 PhenoGen
PIRSF Tetraspanin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS TMFOUR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
  TM4_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48652 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1W2P8C6_MOUSE UniProtKB/TrEMBL
  CD63_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3UC80 ENTREZGENE, UniProtKB/TrEMBL
  Q549D0 ENTREZGENE, UniProtKB/TrEMBL
  Q8BT06_MOUSE UniProtKB/TrEMBL