Timm9 (translocase of inner mitochondrial membrane 9) - Rat Genome Database

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Gene: Timm9 (translocase of inner mitochondrial membrane 9) Rattus norvegicus
Analyze
Symbol: Timm9
Name: translocase of inner mitochondrial membrane 9
RGD ID: 621656
Description: Predicted to enable membrane insertase activity; protein homodimerization activity; and protein-folding chaperone binding activity. Predicted to be involved in protein insertion into mitochondrial inner membrane. Predicted to be located in mitochondrial inner membrane and mitochondrial intermembrane space. Predicted to be part of TIM22 mitochondrial import inner membrane insertion complex and mitochondrial intermembrane space protein transporter complex. Orthologous to human TIMM9 (translocase of inner mitochondrial membrane 9); PARTICIPATES IN beta-barrel pathway of mitochondrial protein import; carrier pathway of mitochondrial protein import; INTERACTS WITH 17beta-estradiol; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: mitochondrial import inner membrane translocase subunit Tim9; Tim9; Tim9a; Timm9a; translocase of inner mitochondrial membrane 9 homolog; translocase of inner mitochondrial membrane 9 homolog (yeast)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8695,346,065 - 95,358,895 (-)NCBIGRCr8
mRatBN7.2689,610,094 - 89,622,924 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl689,610,094 - 89,622,924 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx689,994,125 - 90,006,953 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0690,293,594 - 90,306,422 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0689,733,091 - 89,745,919 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0693,549,484 - 93,562,314 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl693,549,484 - 93,562,314 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06103,015,072 - 103,027,963 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4693,218,517 - 93,231,326 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1693,221,978 - 93,222,488 (-)NCBI
Celera688,094,219 - 88,107,044 (-)NCBICelera
Cytogenetic Map6q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Timm9RatJoubert syndrome 23  ISORGD:13526558554872ClinVar Annotator: match by term: Joubert syndrome 23ClinVarPMID:26096313|PMID:26166481|PMID:26386044|PMID:28492532

1 to 20 of 94 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Timm9Rat1,2-dichloroethane decreases expressionISORGD:16232566480464ethylene dichloride results in decreased expression of TIMM9 mRNACTDPMID:28960355
Timm9Rat17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of TIMM9 mRNACTDPMID:32145629
Timm9Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISORGD:16232566480464Tetrachlorodibenzodioxin affects the expression of TIMM9 mRNACTDPMID:21570461
Timm9Rat2,4-dinitrotoluene affects expressionEXP 64804642,4-dinitrotoluene affects the expression of TIMM9 mRNACTDPMID:21346803
Timm9Rat2,6-dinitrotoluene affects expressionEXP 64804642,6-dinitrotoluene affects the expression of TIMM9 mRNACTDPMID:21346803
Timm9Rat2-methylcholine affects expressionISORGD:13526556480464beta-methylcholine affects the expression of TIMM9 mRNACTDPMID:21179406
Timm9Rat3-isobutyl-1-methyl-7H-xanthine multiple interactionsISORGD:13526556480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] more ...CTDPMID:28628672
Timm9Rat4,4'-sulfonyldiphenol increases expressionISORGD:16232566480464bisphenol S results in increased expression of TIMM9 mRNACTDPMID:39298647
Timm9Rat4,4'-sulfonyldiphenol multiple interactionsEXP 6480464[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of more ...CTDPMID:36041667
Timm9Rat4-amino-2,6-dinitrotoluene affects expressionEXP 64804644-amino-2,6-dinitrotoluene affects the expression of TIMM9 mRNACTDPMID:21346803
Timm9Rat4-hydroxyphenyl retinamide increases expressionISORGD:16232566480464Fenretinide results in increased expression of TIMM9 mRNACTDPMID:28973697
Timm9Ratacetamide decreases expressionEXP 6480464acetamide results in decreased expression of TIMM9 mRNACTDPMID:31881176
Timm9Ratall-trans-retinoic acid decreases expressionISORGD:13526556480464Tretinoin results in decreased expression of TIMM9 mRNACTDPMID:33167477
Timm9Ratammonium chloride affects expressionEXP 6480464Ammonium Chloride affects the expression of TIMM9 mRNACTDPMID:16483693
Timm9Rataristolochic acid A decreases expressionISORGD:13526556480464aristolochic acid I results in decreased expression of TIMM9 mRNACTDPMID:33212167
Timm9Ratbeauvericin multiple interactionsISORGD:13526556480464[beauvericin co-treated with enniatins] results in decreased expression of TIMM9 proteinCTDPMID:32407736
Timm9Ratbenzo[a]pyrene increases expressionISORGD:16232566480464Benzo(a)pyrene results in increased expression of TIMM9 mRNACTDPMID:22228805
Timm9Ratbenzo[a]pyrene increases methylationISORGD:13526556480464Benzo(a)pyrene results in increased methylation of TIMM9 5' UTRCTDPMID:27901495
Timm9Ratbenzo[a]pyrene diol epoxide I decreases expressionISORGD:135265564804647,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide results in decreased expression of TIMM9 mRNACTDPMID:19150397|PMID:20382639
Timm9Ratbeta-lapachone increases expressionISORGD:13526556480464beta-lapachone results in increased expression of TIMM9 mRNACTDPMID:38218311

1 to 20 of 94 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Timm9Ratbiological_process  ND 159840712/2017: no relevant rat dataRGD 
Timm9Ratprotein insertion into mitochondrial inner membrane involved_inISORGD:16232561624291 PMID:14726512RGDPMID:14726512
Timm9Ratprotein insertion into mitochondrial inner membrane involved_inIEAUniProtKB:Q9Y5J7|ensembl:ENSP000003785881600115GO_REF:0000107EnsemblGO_REF:0000107
Timm9Ratprotein insertion into mitochondrial inner membrane involved_inIEAUniProtKB:Q9WV98|ensembl:ENSMUSP000001262981600115GO_REF:0000107EnsemblGO_REF:0000107
Timm9Ratprotein insertion into mitochondrial inner membrane involved_inISORGD:13526551624291 PMID:16387659, PMID:32901109RGDPMID:16387659|PMID:32901109
Timm9Ratprotein transport involved_inIEAUniProtKB-KW:KW-0653|UniProtKB-KW:KW-08111600115GO_REF:0000043UniProtGO_REF:0000043

Cellular Component
1 to 16 of 16 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Timm9Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Timm9Ratmitochondrial inner membrane located_inISORGD:13526551624291 PMID:14726512, PMID:32901109RGDPMID:14726512|PMID:32901109
Timm9Ratmitochondrial inner membrane located_inIEAUniProtKB:Q9Y5J7|ensembl:ENSP000003785881600115GO_REF:0000107EnsemblGO_REF:0000107
Timm9Ratmitochondrial inner membrane located_inIEAUniProtKB-KW:KW-09991600115GO_REF:0000043UniProtGO_REF:0000043
Timm9Ratmitochondrial inner membrane located_inIEAUniProtKB-SubCell:SL-01681600115GO_REF:0000044UniProtGO_REF:0000044
Timm9Ratmitochondrial intermembrane space located_inISORGD:13526551624291 PMID:14726512RGDPMID:14726512
Timm9Ratmitochondrial intermembrane space located_inIEAUniProtKB:Q9Y5J7|ensembl:ENSP000003785881600115GO_REF:0000107EnsemblGO_REF:0000107
Timm9Ratmitochondrial intermembrane space protein transporter complex part_ofISORGD:13526551624291 PMID:14726512, PMID:16387659RGDPMID:14726512|PMID:16387659
Timm9Ratmitochondrial intermembrane space protein transporter complex part_ofIEAUniProtKB:Q9Y5J7|ensembl:ENSP000003785881600115GO_REF:0000107EnsemblGO_REF:0000107
Timm9Ratmitochondrial intermembrane space protein transporter complex part_ofIEAUniProtKB:Q9WV98|ensembl:ENSMUSP000001262981600115GO_REF:0000107EnsemblGO_REF:0000107
Timm9Ratmitochondrial intermembrane space protein transporter complex part_ofISORGD:16232561624291 PMID:14726512RGDPMID:14726512
Timm9Ratmitochondrion located_inISORGD:13526551624291 RGDGO_REF:0000052
Timm9Ratmitochondrion located_inIEAUniProtKB:Q9Y5J7|ensembl:ENSP000003785881600115GO_REF:0000107EnsemblGO_REF:0000107
Timm9Ratmitochondrion located_inIEAUniProtKB-KW:KW-04961600115GO_REF:0000043UniProtGO_REF:0000043
Timm9RatTIM22 mitochondrial import inner membrane insertion complex part_ofISORGD:13526551624291 PMID:32901109RGDPMID:32901109
Timm9RatTIM22 mitochondrial import inner membrane insertion complex part_ofIEAUniProtKB:Q9Y5J7|ensembl:ENSP000003785881600115GO_REF:0000107EnsemblGO_REF:0000107
1 to 16 of 16 rows

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Timm9Ratmembrane insertase activity enablesISORGD:13526551624291 PMID:16387659RGDPMID:16387659
Timm9Ratmembrane insertase activity enablesIEAUniProtKB:Q9Y5J7|ensembl:ENSP000003785881600115GO_REF:0000107EnsemblGO_REF:0000107
Timm9Ratmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
Timm9Ratprotein binding enablesISORGD:13526551624291UniProtKB:P62072 PMID:14726512, PMID:30021884, PMID:33961781RGDPMID:14726512|PMID:30021884|PMID:33961781
Timm9Ratprotein homodimerization activity enablesISORGD:13526551624291UniProtKB:Q9Y5J7 PMID:16387659RGDPMID:16387659
Timm9Ratprotein homodimerization activity enablesIEAUniProtKB:Q9Y5J7|ensembl:ENSP000003785881600115GO_REF:0000107EnsemblGO_REF:0000107
Timm9Ratprotein-folding chaperone binding enablesISORGD:13526551624291UniProtKB:P62072 PMID:16387659RGDPMID:16387659
Timm9Ratprotein-folding chaperone binding enablesIEAUniProtKB:Q9Y5J7|ensembl:ENSP000003785881600115GO_REF:0000107EnsemblGO_REF:0000107

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Timm9Ratbeta-barrel pathway of mitochondrial protein import  ISORGD:135265510412662 RGD 
Timm9Ratcarrier pathway of mitochondrial protein import  ISORGD:135265510412667 RGD 

#
Reference Title
Reference Citation
1. Assembly of beta-barrel proteins in the mitochondrial outer membrane. Hohr AI, etal., Biochim Biophys Acta. 2015 Jan;1853(1):74-88. doi: 10.1016/j.bbamcr.2014.10.006. Epub 2014 Oct 8.
2. Organization and function of the small Tim complexes acting along the import pathway of metabolite carriers into mammalian mitochondria. Muhlenbein N, etal., J Biol Chem. 2004 Apr 2;279(14):13540-6. Epub 2004 Jan 15.
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
7. Information Derived from GenBank Report RGD, Sept. 2003
PMID:11101512   PMID:14651853   PMID:15057822   PMID:16387659   PMID:18614015  



Timm9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8695,346,065 - 95,358,895 (-)NCBIGRCr8
mRatBN7.2689,610,094 - 89,622,924 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl689,610,094 - 89,622,924 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx689,994,125 - 90,006,953 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0690,293,594 - 90,306,422 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0689,733,091 - 89,745,919 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0693,549,484 - 93,562,314 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl693,549,484 - 93,562,314 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06103,015,072 - 103,027,963 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4693,218,517 - 93,231,326 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1693,221,978 - 93,222,488 (-)NCBI
Celera688,094,219 - 88,107,044 (-)NCBICelera
Cytogenetic Map6q24NCBI
TIMM9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381458,408,494 - 58,427,531 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1458,408,495 - 58,427,531 (-)EnsemblGRCh38hg38GRCh38
GRCh371458,875,212 - 58,894,249 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361457,945,123 - 57,963,985 (-)NCBINCBI36Build 36hg18NCBI36
Build 341457,945,123 - 57,963,985NCBI
Celera1438,925,342 - 38,944,209 (-)NCBICelera
Cytogenetic Map14q23.1NCBI
HuRef1439,039,988 - 39,058,854 (-)NCBIHuRef
CHM1_11458,813,939 - 58,832,779 (-)NCBICHM1_1
T2T-CHM13v2.01452,615,545 - 52,634,567 (-)NCBIT2T-CHM13v2.0
Timm9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391271,169,946 - 71,183,476 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1271,169,947 - 71,183,458 (-)EnsemblGRCm39 Ensembl
GRCm381271,123,172 - 71,136,708 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1271,123,173 - 71,136,684 (-)EnsemblGRCm38mm10GRCm38
MGSCv371272,224,159 - 72,237,662 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361272,041,777 - 72,055,280 (-)NCBIMGSCv36mm8
Celera1272,223,204 - 72,236,707 (-)NCBICelera
Cytogenetic Map12C2NCBI
cM Map1229.39NCBI
Timm9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546612,115,010 - 12,125,024 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546612,115,003 - 12,125,024 (-)NCBIChiLan1.0ChiLan1.0
TIMM9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21559,530,271 - 59,549,211 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11458,746,785 - 58,765,725 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01439,000,431 - 39,019,381 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11457,268,137 - 57,287,134 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1457,268,137 - 57,287,014 (-)Ensemblpanpan1.1panPan2
TIMM9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1833,755,514 - 33,772,183 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl833,755,960 - 33,757,980 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl121,462,801 - 21,463,070 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha833,516,797 - 33,533,459 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0833,996,953 - 34,013,637 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl833,996,951 - 34,012,223 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1833,609,476 - 33,626,113 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0833,677,599 - 33,694,250 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0834,051,958 - 34,068,609 (-)NCBIUU_Cfam_GSD_1.0
Timm9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864071,392,479 - 71,405,674 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364952,786,019 - 2,799,635 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364952,786,019 - 2,799,575 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TIMM9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11187,485,407 - 187,504,452 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21208,389,459 - 208,408,465 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TIMM9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12435,591,561 - 35,602,679 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605323,870,877 - 23,884,658 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Timm9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248843,467,103 - 3,475,217 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248843,466,408 - 3,477,038 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

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Variants in Timm9
72 total Variants

Predicted Target Of
Summary Value
Count of predictions:252
Count of miRNA genes:171
Interacting mature miRNAs:193
Transcripts:ENSRNOT00000010871
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 29 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)672202632115200186Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)673463459109394713Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)682523650110548006Rat

1 to 10 of 29 rows
RH141247  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2689,610,241 - 89,610,424 (+)MAPPERmRatBN7.2
Rnor_6.0693,549,632 - 93,549,814NCBIRnor6.0
Rnor_5.06103,015,220 - 103,015,402UniSTSRnor5.0
RGSC_v3.4693,218,665 - 93,218,847UniSTSRGSC3.4
Celera688,094,367 - 88,094,549UniSTS
RH 3.4 Map6639.2UniSTS
Cytogenetic Map6q24UniSTS
AI100846  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2689,618,252 - 89,618,435 (+)MAPPERmRatBN7.2
Rnor_6.0693,557,643 - 93,557,825NCBIRnor6.0
Rnor_5.06103,023,231 - 103,023,413UniSTSRnor5.0
RGSC_v3.4693,226,676 - 93,226,858UniSTSRGSC3.4
Celera688,102,378 - 88,102,560UniSTS
RH 3.4 Map6640.3UniSTS
Cytogenetic Map6q24UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31


1 to 16 of 16 rows
RefSeq Transcripts NM_001276429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001276430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_133604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_075101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC128303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF150102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB775939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV726219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM052814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM056491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 16 of 16 rows

Ensembl Acc Id: ENSRNOT00000010871   ⟹   ENSRNOP00000010871
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl689,610,094 - 89,622,924 (-)Ensembl
Rnor_6.0 Ensembl693,549,484 - 93,562,314 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000088790   ⟹   ENSRNOP00000071324
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl693,549,484 - 93,562,314 (-)Ensembl
RefSeq Acc Id: NM_001276429   ⟹   NP_001263358
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8695,346,065 - 95,358,895 (-)NCBI
mRatBN7.2689,610,094 - 89,622,924 (-)NCBI
Rnor_6.0693,549,484 - 93,562,314 (-)NCBI
Rnor_5.06103,015,072 - 103,027,963 (-)NCBI
Celera688,094,219 - 88,107,044 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001276430   ⟹   NP_001263359
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8695,346,065 - 95,358,895 (-)NCBI
mRatBN7.2689,610,094 - 89,622,924 (-)NCBI
Rnor_6.0693,549,484 - 93,562,314 (-)NCBI
Rnor_5.06103,015,072 - 103,027,963 (-)NCBI
Celera688,094,219 - 88,107,044 (-)NCBI
Sequence:
RefSeq Acc Id: NM_133604   ⟹   NP_598288
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8695,346,065 - 95,358,895 (-)NCBI
mRatBN7.2689,610,094 - 89,622,924 (-)NCBI
Rnor_6.0693,549,484 - 93,562,314 (-)NCBI
Rnor_5.06103,015,072 - 103,027,963 (-)NCBI
Celera688,094,219 - 88,107,044 (-)NCBI
Sequence:
RefSeq Acc Id: NR_075101
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8695,346,065 - 95,358,895 (-)NCBI
mRatBN7.2689,610,094 - 89,622,924 (-)NCBI
Rnor_6.0693,549,484 - 93,562,314 (-)NCBI
Rnor_5.06103,015,072 - 103,027,963 (-)NCBI
Celera688,094,219 - 88,107,044 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039111743   ⟹   XP_038967671
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8695,346,067 - 95,358,631 (-)NCBI
mRatBN7.2689,610,096 - 89,622,660 (-)NCBI
RefSeq Acc Id: XM_063261516   ⟹   XP_063117586
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8695,346,067 - 95,357,078 (-)NCBI
RefSeq Acc Id: XM_063261517   ⟹   XP_063117587
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8695,346,067 - 95,358,884 (-)NCBI
RefSeq Acc Id: NP_001263359   ⟸   NM_001276430
- UniProtKB: Q9WV97 (UniProtKB/Swiss-Prot),   A6HC17 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_598288   ⟸   NM_133604
- UniProtKB: Q9WV97 (UniProtKB/Swiss-Prot),   A6HC17 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001263358   ⟸   NM_001276429
- UniProtKB: Q9WV97 (UniProtKB/Swiss-Prot),   A6HC17 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000010871   ⟸   ENSRNOT00000010871
Ensembl Acc Id: ENSRNOP00000071324   ⟸   ENSRNOT00000088790
Tim10-like

Name Modeler Protein Id AA Range Protein Structure
AF-Q9WV97-F1-model_v2 AlphaFold Q9WV97 1-89 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13694649
Promoter ID:EPDNEW_R5173
Type:multiple initiation site
Name:Timm9_1
Description:translocase of inner mitochondrial membrane 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0693,562,302 - 93,562,362EPDNEW


1 to 17 of 17 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-37183 BioCyc
Ensembl Genes ENSRNOG00000008222 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000010871 ENTREZGENE
  ENSRNOT00000010871.6 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.287.810 UniProtKB/Swiss-Prot
InterPro Mito_inner_translocase_sub UniProtKB/Swiss-Prot
  Tim10-like UniProtKB/Swiss-Prot
  Tim10-like_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:171139 UniProtKB/Swiss-Prot
NCBI Gene 171139 ENTREZGENE
PANTHER MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM9B UniProtKB/Swiss-Prot
Pfam zf-Tim10_DDP UniProtKB/Swiss-Prot
PhenoGen Timm9 PhenoGen
RatGTEx ENSRNOG00000008222 RatGTEx
Superfamily-SCOP SSF144122 UniProtKB/Swiss-Prot
UniProt A6HC17 ENTREZGENE, UniProtKB/TrEMBL
  Q9WV97 ENTREZGENE, UniProtKB/Swiss-Prot
1 to 17 of 17 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-08 Timm9  translocase of inner mitochondrial membrane 9  Timm9  translocase of inner mitochondrial membrane 9 homolog (yeast)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-08 Timm9  translocase of inner mitochondrial membrane 9 homolog (yeast)      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Timm9  translocase of inner mitochondrial membrane 9 homolog (yeast)      Symbol and Name status set to provisional 70820 PROVISIONAL