Atp9a (ATPase phospholipid transporting 9A (putative)) - Rat Genome Database

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Gene: Atp9a (ATPase phospholipid transporting 9A (putative)) Rattus norvegicus
Analyze
Symbol: Atp9a
Name: ATPase phospholipid transporting 9A (putative)
RGD ID: 621421
Description: Predicted to enable protease binding activity. Predicted to be involved in negative regulation of exosomal secretion; regulation of endocytic recycling; and regulation of retrograde transport, endosome to Golgi. Predicted to be located in several cellular components, including endosome membrane; perinuclear region of cytoplasm; and trans-Golgi network membrane. Orthologous to human ATP9A (ATPase phospholipid transporting 9A (putative)); INTERACTS WITH ammonium chloride; benzene; ochratoxin A.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATPase, class II, type 9A; probable phospholipid-transporting ATPase IIA
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23157,360,354 - 157,467,628 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl3157,360,359 - 157,467,818 (-)Ensembl
Rnor_6.03165,405,588 - 165,511,104 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3165,412,803 - 165,477,771 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03171,545,755 - 171,624,827 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera3155,928,299 - 155,999,149 (-)NCBICelera
Cytogenetic Map3q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Additional References at PubMed
PMID:12477932   PMID:21914794   PMID:26094765   PMID:26240149  


Genomics

Comparative Map Data
Atp9a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23157,360,354 - 157,467,628 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl3157,360,359 - 157,467,818 (-)Ensembl
Rnor_6.03165,405,588 - 165,511,104 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3165,412,803 - 165,477,771 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03171,545,755 - 171,624,827 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera3155,928,299 - 155,999,149 (-)NCBICelera
Cytogenetic Map3q42NCBI
ATP9A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382051,596,514 - 51,768,390 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2051,596,514 - 51,768,390 (-)EnsemblGRCh38hg38GRCh38
GRCh372050,213,053 - 50,384,929 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362049,646,721 - 49,818,315 (-)NCBINCBI36hg18NCBI36
Build 342049,646,723 - 49,818,274NCBI
Celera2046,917,463 - 47,089,610 (-)NCBI
Cytogenetic Map20q13.2NCBI
HuRef2046,960,832 - 47,132,885 (-)NCBIHuRef
CHM1_12050,118,485 - 50,290,054 (-)NCBICHM1_1
T2T-CHM13v2.02053,367,254 - 53,539,838 (-)NCBI
Atp9a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392168,476,358 - 168,584,290 (-)NCBIGRCm39mm39
GRCm39 Ensembl2168,476,358 - 168,584,329 (-)Ensembl
GRCm382168,634,438 - 168,742,370 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2168,634,438 - 168,742,409 (-)EnsemblGRCm38mm10GRCm38
MGSCv372168,459,938 - 168,567,300 (-)NCBIGRCm37mm9NCBIm37
MGSCv362168,325,643 - 168,433,005 (-)NCBImm8
Celera2174,575,455 - 174,685,579 (-)NCBICelera
Cytogenetic Map2H3NCBI
Atp9a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554456,876,952 - 6,996,028 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554456,876,937 - 6,991,513 (+)NCBIChiLan1.0ChiLan1.0
ATP9A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12049,067,994 - 49,202,301 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2049,067,994 - 49,204,871 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02047,944,444 - 48,116,500 (-)NCBIMhudiblu_PPA_v0panPan3
ATP9A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12437,797,150 - 37,912,031 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2437,800,281 - 37,911,890 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2437,037,898 - 37,169,518 (-)NCBI
ROS_Cfam_1.02438,505,800 - 38,638,000 (-)NCBI
ROS_Cfam_1.0 Ensembl2438,505,802 - 38,638,614 (-)Ensembl
UMICH_Zoey_3.12437,742,052 - 37,874,876 (-)NCBI
UNSW_CanFamBas_1.02437,875,184 - 38,007,756 (-)NCBI
UU_Cfam_GSD_1.02438,420,934 - 38,553,947 (-)NCBI
Atp9a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640187,887,536 - 187,975,368 (+)NCBI
SpeTri2.0NW_0049365143,341,207 - 3,428,948 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP9A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1752,936,173 - 53,103,190 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11752,936,169 - 53,072,620 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21759,377,939 - 59,514,394 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP9A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1212,216,908 - 12,376,887 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl212,216,930 - 12,376,530 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605060,640,655 - 60,780,275 (+)NCBIVero_WHO_p1.0
Atp9a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247904,188,052 - 4,328,920 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247904,187,643 - 4,328,933 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
C78563  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23157,472,931 - 157,473,087 (+)MAPPERmRatBN7.2
Rnor_6.03165,518,678 - 165,518,833NCBIRnor6.0
Rnor_5.03171,655,026 - 171,655,181UniSTSRnor5.0
Celera3156,037,369 - 156,037,524UniSTS
RH143096  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23157,417,025 - 157,417,285 (+)MAPPERmRatBN7.2
Rnor_6.03165,461,502 - 165,461,761NCBIRnor6.0
Rnor_5.03171,599,691 - 171,599,950UniSTSRnor5.0
Celera3155,989,725 - 155,989,984UniSTS
RH 3.4 Map31483.4UniSTS
RH141846  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23157,360,488 - 157,360,694 (+)MAPPERmRatBN7.2
Rnor_6.03165,405,723 - 165,405,928NCBIRnor6.0
Rnor_5.03171,545,890 - 171,546,095UniSTSRnor5.0
Celera3155,928,434 - 155,928,639UniSTS
RH 3.4 Map31480.7UniSTS
Cytogenetic Map18q12.3UniSTS
UniSTS:234614  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23157,474,128 - 157,474,212 (+)MAPPERmRatBN7.2
Rnor_6.03165,519,879 - 165,519,962NCBIRnor6.0
Rnor_5.03171,656,228 - 171,656,311UniSTSRnor5.0
Celera3156,038,564 - 156,038,647UniSTS
RH124626  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23157,472,956 - 157,473,102 (+)MAPPERmRatBN7.2
Rnor_6.03165,518,703 - 165,518,848NCBIRnor6.0
Rnor_5.03171,655,051 - 171,655,196UniSTSRnor5.0
Celera3156,037,394 - 156,037,539UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1581568Rf53Renal function QTL 53total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3130193298161695983Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141339013162184794Rat
2317883Alcrsp26Alcohol response QTL 261.80.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)3145526770169034231Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3145925360166177555Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3145925360166177555Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3145925360166177555Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3145925360166177555Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3145925360166177555Rat
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3145925360166177555Rat
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3145925360166177555Rat
1598854Memor10Memory QTL 102exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)3145956084161299569Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3145956084169034231Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3149040888168026850Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:134
Count of miRNA genes:63
Interacting mature miRNAs:66
Transcripts:ENSRNOT00000071672, ENSRNOT00000075348
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 41 39 29 2 29 8 11 74 35 41 11 8
Low 2 18 12 17 12
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000071672   ⟹   ENSRNOP00000064988
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3157,360,359 - 157,438,196 (-)Ensembl
Rnor_6.0 Ensembl3165,412,803 - 165,477,771 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000101406   ⟹   ENSRNOP00000087584
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3157,360,359 - 157,467,818 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000112529   ⟹   ENSRNOP00000090350
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3157,360,359 - 157,467,550 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000114454   ⟹   ENSRNOP00000091936
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3157,360,359 - 157,460,843 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000120273   ⟹   ENSRNOP00000081936
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3157,360,359 - 157,439,633 (-)Ensembl
RefSeq Acc Id: XM_039106727   ⟹   XP_038962655
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23157,360,354 - 157,467,394 (-)NCBI
RefSeq Acc Id: XM_039106728   ⟹   XP_038962656
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23157,360,682 - 157,460,536 (-)NCBI
RefSeq Acc Id: XM_039106729   ⟹   XP_038962657
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23157,360,682 - 157,467,628 (-)NCBI
RefSeq Acc Id: XM_039106730   ⟹   XP_038962658
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23157,360,682 - 157,439,752 (-)NCBI
RefSeq Acc Id: XM_039106731   ⟹   XP_038962659
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23157,360,682 - 157,438,175 (-)NCBI
Reference Sequences
RefSeq Acc Id: ENSRNOP00000064988   ⟸   ENSRNOT00000071672
RefSeq Acc Id: XP_038962655   ⟸   XM_039106727
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038962657   ⟸   XM_039106729
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038962656   ⟸   XM_039106728
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038962658   ⟸   XM_039106730
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038962659   ⟸   XM_039106731
- Peptide Label: isoform X5
RefSeq Acc Id: ENSRNOP00000090350   ⟸   ENSRNOT00000112529
RefSeq Acc Id: ENSRNOP00000081936   ⟸   ENSRNOT00000120273
RefSeq Acc Id: ENSRNOP00000087584   ⟸   ENSRNOT00000101406
RefSeq Acc Id: ENSRNOP00000091936   ⟸   ENSRNOT00000114454
Protein Domains
PhoLip_ATPase_C

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R6E0-F1-model_v2 AlphaFold M0R6E0 1-808 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621421 AgrOrtholog
BioCyc Gene G2FUF-46694 BioCyc
Ensembl Genes ENSRNOG00000049484 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000064988 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000081936 ENTREZGENE
  ENSRNOP00000087584 ENTREZGENE
  ENSRNOP00000090350 ENTREZGENE
  ENSRNOP00000091936 ENTREZGENE
Ensembl Transcript ENSRNOT00000071672 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000101406 ENTREZGENE
  ENSRNOT00000112529 ENTREZGENE
  ENSRNOT00000114454 ENTREZGENE
  ENSRNOT00000120273 ENTREZGENE
Gene3D-CATH 3.40.1110.10 UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/TrEMBL
InterPro ATP9A UniProtKB/TrEMBL
  ATPase_P-typ_cyto_dom_N UniProtKB/TrEMBL
  ATPase_P-typ_P_site UniProtKB/TrEMBL
  ATPase_P-typ_TM_dom_sf UniProtKB/TrEMBL
  ATPase_P-typ_transduc_dom_A_sf UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  HAD_sf UniProtKB/TrEMBL
  P-type_ATPase_IV UniProtKB/TrEMBL
  P_typ_ATPase UniProtKB/TrEMBL
  P_typ_ATPase_c UniProtKB/TrEMBL
  P_typ_ATPase_HD_dom UniProtKB/TrEMBL
NCBI Gene 84011 ENTREZGENE
PANTHER PTHR24092:SF49 UniProtKB/TrEMBL
Pfam PhoLip_ATPase_C UniProtKB/TrEMBL
PhenoGen Atp9a PhenoGen
PROSITE ATPASE_E1_E2 UniProtKB/TrEMBL
Superfamily-SCOP SSF56784 UniProtKB/TrEMBL
  SSF81653 UniProtKB/TrEMBL
  SSF81660 UniProtKB/TrEMBL
  SSF81665 UniProtKB/TrEMBL
TIGRFAMs ATPase-Plipid UniProtKB/TrEMBL
  ATPase_P-type UniProtKB/TrEMBL
UniProt M0R6E0_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Atp9a  ATPase phospholipid transporting 9A (putative)  Atp9a  ATPase, class II, type 9A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-02-26 Atp9a  ATPase, class II, type 9A    ATPase, Class II, type 9A  Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Atp9a  ATPase, Class II, type 9A      Symbol and Name status set to provisional 70820 PROVISIONAL