Mir3594 (microRNA 3594) - Rat Genome Database

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Gene: Mir3594 (microRNA 3594) Rattus norvegicus
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Symbol: Mir3594
Name: microRNA 3594
RGD ID: 4888570
Description: INTERACTS WITH atrazine; hexanal; nitrofen
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: rno-mir-3594
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810105,845,830 - 105,845,894 (-)NCBIGRCr8
mRatBN7.210105,347,412 - 105,347,476 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10105,347,412 - 105,347,476 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10110,451,705 - 110,451,769 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010109,914,736 - 109,914,800 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010105,267,957 - 105,268,021 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010109,244,637 - 109,244,701 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10109,244,637 - 109,244,701 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010108,842,796 - 108,842,860 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera10103,892,642 - 103,892,706 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Mir3594Ratatrazine decreases expressionEXP 6480464Atrazine results in decreased expression of MIR3594 mRNACTDPMID:36841081
Mir3594Rathexanal decreases expressionEXP 6480464n-hexanal results in decreased expression of MIR3594 mRNACTDPMID:26403475
Mir3594Ratnitrofen increases expressionEXP 6480464nitrofen results in increased expression of MIR3594 mRNACTDPMID:26720608


#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:16381832   PMID:20403161  



.

Predicted Targets
Summary Value
Count of predictions:10232
Count of gene targets:6857
Count of transcripts:7443
Interacting mature miRNAs:rno-miR-3594-3p, rno-miR-3594-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 40 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
7387312Bw125Body weight QTL 12530.0047retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight (CMO:0000356)1064890616107211142Rat
12880384Cm107Cardiac mass QTL 1070.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)90404397107211142Rat
12880385Cm108Cardiac mass QTL 1080.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)90404397107211142Rat
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093223816107057807Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1066978955107211142Rat
2303589Bw87Body weight QTL 872body mass (VT:0001259)body weight (CMO:0000012)1081285008107211142Rat
12880396Am13Aortic mass QTL 130.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1090404397107211142Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
12880398Kidm67Kidney mass QTL 670.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1090404397107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat

1 to 10 of 40 rows



ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
2 3 2 4 5 5 1 5 2


RefSeq Transcripts NR_037395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000071346
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10105,347,412 - 105,347,476 (-)Ensembl
Rnor_6.0 Ensembl10109,244,637 - 109,244,701 (-)Ensembl
RefSeq Acc Id: NR_037395
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810105,845,830 - 105,845,894 (-)NCBI
mRatBN7.210105,347,412 - 105,347,476 (-)NCBI
Rnor_6.010109,244,637 - 109,244,701 (-)NCBI
Rnor_5.010108,842,796 - 108,842,860 (-)NCBI
Celera10103,892,642 - 103,892,706 (-)NCBI
Sequence:

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 9 of 9 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-22458 BioCyc
Ensembl Genes ENSRNOG00000047814 Ensembl
miRBase MI0015475 ENTREZGENE
NCBI Gene 100526610 ENTREZGENE
PhenoGen Mir3594 PhenoGen
RatGTEx ENSRNOG00000047814 RatGTEx
RNAcentral URS000075A21A RNACentral
  URS000075A4DD RNACentral
  URS000075B12D RNACentral
1 to 9 of 9 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-04-09 Mir3594  microRNA 3594  Mir3594  microRNA mir-3594  Name updated 61478 APPROVED
2010-11-23 Mir3594  microRNA mir-3594      Symbol and Name status set to provisional 70820 PROVISIONAL