LOC120096057 (5S ribosomal RNA) - Rat Genome Database

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Gene: LOC120096057 (5S ribosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120096057 (Ensembl: LOC120096161)
Name: 5S ribosomal RNA
RGD ID: 41212099
Description:
Type: rrna
RefSeq Status: MODEL
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8125,892,018 - 5,892,135 (-)NCBIGRCr8
mRatBN7.2121,056,470 - 1,056,587 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl121,106,852 - 1,106,969 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl121,148,672 - 1,148,789 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl121,056,470 - 1,056,587 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl121,133,457 - 1,133,574 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl121,099,495 - 1,099,612 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl121,097,042 - 1,097,159 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl124,058,243 - 4,058,360 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl124,050,898 - 4,051,015 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl124,072,938 - 4,073,055 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl124,068,023 - 4,068,140 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl124,065,564 - 4,065,681 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl124,040,245 - 4,040,362 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl121,101,944 - 1,102,061 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl124,063,090 - 4,063,207 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl121,138,862 - 1,138,979 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl121,143,768 - 1,143,885 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl124,048,451 - 4,048,568 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl124,046,002 - 4,046,119 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl124,060,687 - 4,060,804 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl121,118,364 - 1,118,481 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl121,120,829 - 1,120,946 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl121,113,453 - 1,113,570 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl121,146,211 - 1,146,328 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl124,070,480 - 4,070,597 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl121,125,691 - 1,125,808 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl124,078,485 - 4,078,602 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl124,055,802 - 4,055,919 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl121,141,321 - 1,141,438 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl121,115,910 - 1,116,027 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map12p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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1 to 10 of 19 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12136247923Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat

1 to 10 of 19 rows





RefSeq Transcripts XR_005492116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000100951
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl121,056,470 - 1,056,587 (-)Ensembl
RefSeq Acc Id: XR_005492116
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8125,892,018 - 5,892,135 (-)NCBI
mRatBN7.2121,056,470 - 1,056,587 (-)NCBI

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 40 of 62 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-20480 BioCyc
Ensembl Genes ENSRNOG00000062342 Ensembl
  ENSRNOG00000062433 Ensembl
  ENSRNOG00000062589 Ensembl
  ENSRNOG00000062634 Ensembl
  ENSRNOG00000062902 Ensembl
  ENSRNOG00000063208 Ensembl
  ENSRNOG00000063447 Ensembl
  ENSRNOG00000063557 Ensembl
  ENSRNOG00000063862 Ensembl
  ENSRNOG00000063921 Ensembl
  ENSRNOG00000064155 Ensembl
  ENSRNOG00000064185 Ensembl
  ENSRNOG00000064538 Ensembl
  ENSRNOG00000064618 Ensembl
  ENSRNOG00000064767 Ensembl
  ENSRNOG00000065467 Ensembl
  ENSRNOG00000066000 Ensembl
  ENSRNOG00000066022 Ensembl
  ENSRNOG00000066370 Ensembl
  ENSRNOG00000067099 Ensembl
  ENSRNOG00000067197 Ensembl
  ENSRNOG00000068125 Ensembl
  ENSRNOG00000068657 Ensembl
  ENSRNOG00000069008 Ensembl
  ENSRNOG00000069325 Ensembl
  ENSRNOG00000069603 Ensembl
  ENSRNOG00000070262 Ensembl
  ENSRNOG00000071042 Ensembl
  ENSRNOG00000071134 Ensembl
NCBI Gene LOC120096057 ENTREZGENE
PhenoGen LOC120096057 PhenoGen
RatGTEx ENSRNOG00000062342 RatGTEx
  ENSRNOG00000062433 RatGTEx
  ENSRNOG00000062589 RatGTEx
  ENSRNOG00000062634 RatGTEx
  ENSRNOG00000062902 RatGTEx
  ENSRNOG00000063208 RatGTEx
  ENSRNOG00000063447 RatGTEx
  ENSRNOG00000063557 RatGTEx
1 to 40 of 62 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120096057  5S ribosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL