LOC120096020 (5S ribosomal RNA) - Rat Genome Database

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Gene: LOC120096020 (5S ribosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120096020 (Ensembl: LOC120096068)
Name: 5S ribosomal RNA
RGD ID: 41118806
Description:
Type: rrna
RefSeq Status: MODEL
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8129,154,664 - 9,154,781 (+)NCBIGRCr8
mRatBN7.2124,118,192 - 4,118,309 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl121,113,453 - 1,113,570 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl124,118,192 - 4,118,309 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl124,040,245 - 4,040,362 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl121,118,364 - 1,118,481 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl124,070,480 - 4,070,597 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl121,125,691 - 1,125,808 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl124,048,451 - 4,048,568 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl121,133,457 - 1,133,574 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl124,065,564 - 4,065,681 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl124,063,090 - 4,063,207 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl121,097,042 - 1,097,159 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl121,115,910 - 1,116,027 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl121,101,944 - 1,102,061 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl124,078,485 - 4,078,602 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl124,060,687 - 4,060,804 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl121,146,211 - 1,146,328 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl121,141,321 - 1,141,438 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl124,046,002 - 4,046,119 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl124,058,243 - 4,058,360 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl121,099,495 - 1,099,612 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl121,148,672 - 1,148,789 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl121,120,829 - 1,120,946 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl121,138,862 - 1,138,979 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl121,106,852 - 1,106,969 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl124,068,023 - 4,068,140 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl124,055,802 - 4,055,919 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl124,050,898 - 4,051,015 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl121,143,768 - 1,143,885 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl124,072,938 - 4,073,055 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map12p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
724526Uae3Urinary albumin excretion QTL 34.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)12390696910373166Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12136247923Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)127977298525593Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)1219318387Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005492109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000102254
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl124,118,192 - 4,118,309 (+)Ensembl
RefSeq Acc Id: XR_005492109
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8129,154,664 - 9,154,781 (+)NCBI
mRatBN7.2124,118,192 - 4,118,309 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-20273 BioCyc
Ensembl Genes ENSRNOG00000062342 Ensembl
  ENSRNOG00000062433 Ensembl
  ENSRNOG00000062589 Ensembl
  ENSRNOG00000062634 Ensembl
  ENSRNOG00000062639 Ensembl
  ENSRNOG00000062902 Ensembl
  ENSRNOG00000063208 Ensembl
  ENSRNOG00000063447 Ensembl
  ENSRNOG00000063557 Ensembl
  ENSRNOG00000063862 Ensembl
  ENSRNOG00000063921 Ensembl
  ENSRNOG00000064155 Ensembl
  ENSRNOG00000064185 Ensembl
  ENSRNOG00000064538 Ensembl
  ENSRNOG00000064618 Ensembl
  ENSRNOG00000064767 Ensembl
  ENSRNOG00000066000 Ensembl
  ENSRNOG00000066022 Ensembl
  ENSRNOG00000066370 Ensembl
  ENSRNOG00000067099 Ensembl
  ENSRNOG00000067197 Ensembl
  ENSRNOG00000068125 Ensembl
  ENSRNOG00000068657 Ensembl
  ENSRNOG00000069008 Ensembl
  ENSRNOG00000069325 Ensembl
  ENSRNOG00000069603 Ensembl
  ENSRNOG00000070262 Ensembl
  ENSRNOG00000071042 Ensembl
  ENSRNOG00000071134 Ensembl
NCBI Gene LOC120096020 ENTREZGENE
PhenoGen LOC120096020 PhenoGen
RatGTEx ENSRNOG00000062342 RatGTEx
  ENSRNOG00000062433 RatGTEx
  ENSRNOG00000062589 RatGTEx
  ENSRNOG00000062634 RatGTEx
  ENSRNOG00000062639 RatGTEx
  ENSRNOG00000062902 RatGTEx
  ENSRNOG00000063208 RatGTEx
  ENSRNOG00000063447 RatGTEx
  ENSRNOG00000063557 RatGTEx
  ENSRNOG00000063862 RatGTEx
  ENSRNOG00000063921 RatGTEx
  ENSRNOG00000064155 RatGTEx
  ENSRNOG00000064185 RatGTEx
  ENSRNOG00000064538 RatGTEx
  ENSRNOG00000064618 RatGTEx
  ENSRNOG00000064767 RatGTEx
  ENSRNOG00000066000 RatGTEx
  ENSRNOG00000066022 RatGTEx
  ENSRNOG00000066370 RatGTEx
  ENSRNOG00000067099 RatGTEx
  ENSRNOG00000067197 RatGTEx
  ENSRNOG00000068125 RatGTEx
  ENSRNOG00000068657 RatGTEx
  ENSRNOG00000069008 RatGTEx
  ENSRNOG00000069325 RatGTEx
  ENSRNOG00000069603 RatGTEx
  ENSRNOG00000070262 RatGTEx
  ENSRNOG00000071042 RatGTEx
  ENSRNOG00000071134 RatGTEx
RNAcentral URS000065B5CF RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120096020  5S ribosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL