PRPF40A (pre-mRNA processing factor 40 homolog A) - Rat Genome Database

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Gene: PRPF40A (pre-mRNA processing factor 40 homolog A) Canis lupus familiaris
Analyze
Symbol: PRPF40A
Name: pre-mRNA processing factor 40 homolog A
RGD ID: 40918553
Description: ENCODES a protein that exhibits proline-rich region binding (ortholog); INVOLVED IN cell migration (ortholog); cytoskeleton organization (ortholog); regulation of cell shape (ortholog); FOUND IN nuclear matrix (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC119864507; pre-mRNA-processing factor 40 homolog A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11953,649,424 - 53,710,095 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1953,651,453 - 53,710,633 (-)NCBICanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1953,651,453 - 53,710,633 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2627,948,940 - 28,009,892 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01955,161,297 - 55,222,274 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1955,163,918 - 55,222,155 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11953,877,024 - 53,937,982 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01953,947,078 - 54,007,975 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01955,412,012 - 55,472,975 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PRPF40A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11953,649,424 - 53,710,095 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1953,651,453 - 53,710,633 (-)NCBICanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1953,651,453 - 53,710,633 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2627,948,940 - 28,009,892 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01955,161,297 - 55,222,274 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1955,163,918 - 55,222,155 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11953,877,024 - 53,937,982 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01953,947,078 - 54,007,975 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01955,412,012 - 55,472,975 (-)NCBIUU_Cfam_GSD_1.0
PRPF40A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382152,651,732 - 152,718,019 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2152,651,593 - 152,718,012 (-)EnsemblGRCh38hg38GRCh38
GRCh372153,508,246 - 153,574,533 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362153,216,353 - 153,282,221 (-)NCBINCBI36Build 36hg18NCBI36
Celera2147,122,555 - 147,188,431 (-)NCBICelera
Cytogenetic Map2q23.3NCBI
HuRef2145,394,474 - 145,460,345 (-)NCBIHuRef
CHM1_12153,514,130 - 153,580,008 (-)NCBICHM1_1
T2T-CHM13v2.02153,104,294 - 153,170,565 (-)NCBIT2T-CHM13v2.0
Prpf40a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39253,024,714 - 53,081,450 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl253,024,716 - 53,081,714 (-)EnsemblGRCm39 Ensembl
GRCm38253,134,702 - 53,191,438 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl253,134,704 - 53,191,284 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl253,134,704 - 53,191,702 (-)EnsemblGRCm38mm10GRCm38
MGSCv37252,997,509 - 53,050,221 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36252,960,484 - 53,013,196 (-)NCBIMGSCv36mm8
Celera254,880,090 - 54,932,591 (-)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map230.69NCBI
Prpf40a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8358,036,779 - 58,098,996 (-)NCBIGRCr8
mRatBN7.2337,625,585 - 37,689,859 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl337,627,690 - 37,690,886 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx341,001,890 - 41,062,025 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0349,586,708 - 49,646,842 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0347,371,550 - 47,431,684 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0338,680,583 - 38,741,570 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl338,682,146 - 38,741,113 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0343,778,141 - 43,839,268 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4334,661,461 - 34,721,438 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1334,557,496 - 34,618,041 (-)NCBI
Celera335,768,130 - 35,827,799 (-)NCBICelera
Cytogenetic Map3q12NCBI
Prpf40a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544018,083,838 - 18,128,701 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544018,083,838 - 18,128,701 (-)NCBIChiLan1.0ChiLan1.0
PRPF40A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21355,339,652 - 55,401,915 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B55,354,632 - 55,417,571 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B39,955,290 - 40,017,636 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B157,189,945 - 157,256,184 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B157,194,506 - 157,254,983 (-)Ensemblpanpan1.1panPan2
Prpf40a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303116,596,815 - 116,654,368 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646924,963,905 - 25,018,961 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646924,963,691 - 25,019,961 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRPF40A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1560,386,596 - 60,439,807 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11560,388,582 - 60,440,478 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21567,034,695 - 67,085,766 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PRPF40A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11038,086,971 - 38,151,726 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1038,088,281 - 38,151,371 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040161,416,070 - 161,480,948 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Prpf40a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248664,369,605 - 4,430,816 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PRPF40A
607 total Variants

Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005631996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005631997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005631998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014121518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022406189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022406190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022406191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038426319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038426320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038426321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038426322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038426323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038426324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038426326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038426327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038426328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038426329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038459465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038502471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038502472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038502473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038502474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038502475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038502476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038502477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038502478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038502479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038565211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038565212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038565213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038565214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038565215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038565216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038565217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038565218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038565219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038565220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038629338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038629339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038629340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038629341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038629342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038629343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038629344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038629346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038629347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038629348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_533359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAAHUQ010000230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000009412   ⟹   ENSCAFP00000008737
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1953,652,155 - 53,710,633 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000043147   ⟹   ENSCAFP00000039572
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1953,653,538 - 53,709,467 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000043383   ⟹   ENSCAFP00000040597
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1953,651,453 - 53,710,633 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000062150   ⟹   ENSCAFP00000049043
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1953,651,453 - 53,710,633 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000064885   ⟹   ENSCAFP00000066605
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1953,651,453 - 53,710,633 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000081744   ⟹   ENSCAFP00000049046
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1953,651,453 - 53,710,633 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000090686   ⟹   ENSCAFP00000046490
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1953,651,453 - 53,710,633 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845019118   ⟹   ENSCAFP00845014935
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1955,163,918 - 55,222,155 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845019222   ⟹   ENSCAFP00845015018
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1955,163,918 - 55,222,155 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845019355   ⟹   ENSCAFP00845015132
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1955,163,918 - 55,222,149 (-)Ensembl
RefSeq Acc Id: XM_005631996   ⟹   XP_005632053
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2627,949,093 - 28,009,892 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005631997   ⟹   XP_005632054
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2627,948,940 - 28,007,258 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005631998   ⟹   XP_005632055
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2627,949,954 - 28,007,258 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014121518   ⟹   XP_013976993
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2627,950,373 - 28,009,892 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022406189   ⟹   XP_022261897
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2627,949,090 - 28,009,892 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022406190   ⟹   XP_022261898
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2627,949,085 - 28,009,892 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022406191   ⟹   XP_022261899
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2627,969,877 - 28,009,892 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038426319   ⟹   XP_038282247
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01955,161,297 - 55,222,265 (-)NCBI
RefSeq Acc Id: XM_038426320   ⟹   XP_038282248
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01955,161,297 - 55,222,124 (-)NCBI
RefSeq Acc Id: XM_038426321   ⟹   XP_038282249
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01955,161,297 - 55,222,267 (-)NCBI
RefSeq Acc Id: XM_038426322   ⟹   XP_038282250
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01955,161,297 - 55,222,267 (-)NCBI
RefSeq Acc Id: XM_038426323   ⟹   XP_038282251
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01955,163,932 - 55,222,274 (-)NCBI
RefSeq Acc Id: XM_038426324   ⟹   XP_038282252
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01955,161,297 - 55,222,129 (-)NCBI
RefSeq Acc Id: XM_038426326   ⟹   XP_038282254
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01955,161,297 - 55,222,269 (-)NCBI
RefSeq Acc Id: XM_038426327   ⟹   XP_038282255
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01955,163,932 - 55,221,266 (-)NCBI
RefSeq Acc Id: XM_038426328   ⟹   XP_038282256
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01955,161,297 - 55,220,848 (-)NCBI
RefSeq Acc Id: XM_038426329   ⟹   XP_038282257
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01955,161,297 - 55,201,288 (-)NCBI
RefSeq Acc Id: XM_038459465   ⟹   XP_038315393
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2627,949,104 - 28,009,892 (+)NCBI
RefSeq Acc Id: XM_038502471   ⟹   XP_038358399
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11953,877,024 - 53,937,972 (-)NCBI
RefSeq Acc Id: XM_038502472   ⟹   XP_038358400
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11953,877,024 - 53,937,832 (-)NCBI
RefSeq Acc Id: XM_038502473   ⟹   XP_038358401
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11953,877,024 - 53,937,975 (-)NCBI
RefSeq Acc Id: XM_038502474   ⟹   XP_038358402
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11953,877,024 - 53,937,974 (-)NCBI
RefSeq Acc Id: XM_038502475   ⟹   XP_038358403
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11953,879,659 - 53,937,982 (-)NCBI
RefSeq Acc Id: XM_038502476   ⟹   XP_038358404
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11953,877,024 - 53,937,837 (-)NCBI
RefSeq Acc Id: XM_038502477   ⟹   XP_038358405
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11953,877,024 - 53,937,977 (-)NCBI
RefSeq Acc Id: XM_038502478   ⟹   XP_038358406
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11953,879,659 - 53,936,958 (-)NCBI
RefSeq Acc Id: XM_038502479   ⟹   XP_038358407
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11953,877,024 - 53,936,540 (-)NCBI
RefSeq Acc Id: XM_038565211   ⟹   XP_038421139
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01955,412,012 - 55,472,964 (-)NCBI
RefSeq Acc Id: XM_038565212   ⟹   XP_038421140
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01955,412,012 - 55,472,825 (-)NCBI
RefSeq Acc Id: XM_038565213   ⟹   XP_038421141
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01955,412,012 - 55,472,967 (-)NCBI
RefSeq Acc Id: XM_038565214   ⟹   XP_038421142
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01955,412,012 - 55,472,967 (-)NCBI
RefSeq Acc Id: XM_038565215   ⟹   XP_038421143
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01955,414,648 - 55,472,975 (-)NCBI
RefSeq Acc Id: XM_038565216   ⟹   XP_038421144
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01955,412,012 - 55,472,830 (-)NCBI
RefSeq Acc Id: XM_038565217   ⟹   XP_038421145
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01955,412,012 - 55,472,970 (-)NCBI
RefSeq Acc Id: XM_038565218   ⟹   XP_038421146
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01955,414,648 - 55,471,948 (-)NCBI
RefSeq Acc Id: XM_038565219   ⟹   XP_038421147
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01955,412,012 - 55,471,530 (-)NCBI
RefSeq Acc Id: XM_038565220   ⟹   XP_038421148
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01955,412,012 - 55,451,990 (-)NCBI
RefSeq Acc Id: XM_038629338   ⟹   XP_038485266
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01953,947,078 - 54,007,964 (-)NCBI
RefSeq Acc Id: XM_038629339   ⟹   XP_038485267
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01953,947,078 - 54,007,826 (-)NCBI
RefSeq Acc Id: XM_038629340   ⟹   XP_038485268
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01953,947,078 - 54,007,968 (-)NCBI
RefSeq Acc Id: XM_038629341   ⟹   XP_038485269
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01953,947,078 - 54,007,968 (-)NCBI
RefSeq Acc Id: XM_038629342   ⟹   XP_038485270
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01953,949,713 - 54,007,975 (-)NCBI
RefSeq Acc Id: XM_038629343   ⟹   XP_038485271
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01953,947,078 - 54,007,831 (-)NCBI
RefSeq Acc Id: XM_038629344   ⟹   XP_038485272
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01953,947,078 - 54,007,970 (-)NCBI
RefSeq Acc Id: XM_038629346   ⟹   XP_038485274
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01953,949,713 - 54,006,955 (-)NCBI
RefSeq Acc Id: XM_038629347   ⟹   XP_038485275
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01953,947,078 - 54,006,537 (-)NCBI
RefSeq Acc Id: XM_038629348   ⟹   XP_038485276
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01953,947,078 - 53,987,018 (-)NCBI
RefSeq Acc Id: XM_533359   ⟹   XP_533359
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2627,949,106 - 28,009,892 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005632053 (Get FASTA)   NCBI Sequence Viewer  
  XP_005632054 (Get FASTA)   NCBI Sequence Viewer  
  XP_005632055 (Get FASTA)   NCBI Sequence Viewer  
  XP_013976993 (Get FASTA)   NCBI Sequence Viewer  
  XP_022261897 (Get FASTA)   NCBI Sequence Viewer  
  XP_022261898 (Get FASTA)   NCBI Sequence Viewer  
  XP_022261899 (Get FASTA)   NCBI Sequence Viewer  
  XP_038282247 (Get FASTA)   NCBI Sequence Viewer  
  XP_038282248 (Get FASTA)   NCBI Sequence Viewer  
  XP_038282249 (Get FASTA)   NCBI Sequence Viewer  
  XP_038282250 (Get FASTA)   NCBI Sequence Viewer  
  XP_038282251 (Get FASTA)   NCBI Sequence Viewer  
  XP_038282252 (Get FASTA)   NCBI Sequence Viewer  
  XP_038282254 (Get FASTA)   NCBI Sequence Viewer  
  XP_038282255 (Get FASTA)   NCBI Sequence Viewer  
  XP_038282256 (Get FASTA)   NCBI Sequence Viewer  
  XP_038282257 (Get FASTA)   NCBI Sequence Viewer  
  XP_038315393 (Get FASTA)   NCBI Sequence Viewer  
  XP_038358399 (Get FASTA)   NCBI Sequence Viewer  
  XP_038358400 (Get FASTA)   NCBI Sequence Viewer  
  XP_038358401 (Get FASTA)   NCBI Sequence Viewer  
  XP_038358402 (Get FASTA)   NCBI Sequence Viewer  
  XP_038358403 (Get FASTA)   NCBI Sequence Viewer  
  XP_038358404 (Get FASTA)   NCBI Sequence Viewer  
  XP_038358405 (Get FASTA)   NCBI Sequence Viewer  
  XP_038358406 (Get FASTA)   NCBI Sequence Viewer  
  XP_038358407 (Get FASTA)   NCBI Sequence Viewer  
  XP_038421139 (Get FASTA)   NCBI Sequence Viewer  
  XP_038421140 (Get FASTA)   NCBI Sequence Viewer  
  XP_038421141 (Get FASTA)   NCBI Sequence Viewer  
  XP_038421142 (Get FASTA)   NCBI Sequence Viewer  
  XP_038421143 (Get FASTA)   NCBI Sequence Viewer  
  XP_038421144 (Get FASTA)   NCBI Sequence Viewer  
  XP_038421145 (Get FASTA)   NCBI Sequence Viewer  
  XP_038421146 (Get FASTA)   NCBI Sequence Viewer  
  XP_038421147 (Get FASTA)   NCBI Sequence Viewer  
  XP_038421148 (Get FASTA)   NCBI Sequence Viewer  
  XP_038485266 (Get FASTA)   NCBI Sequence Viewer  
  XP_038485267 (Get FASTA)   NCBI Sequence Viewer  
  XP_038485268 (Get FASTA)   NCBI Sequence Viewer  
  XP_038485269 (Get FASTA)   NCBI Sequence Viewer  
  XP_038485270 (Get FASTA)   NCBI Sequence Viewer  
  XP_038485271 (Get FASTA)   NCBI Sequence Viewer  
  XP_038485272 (Get FASTA)   NCBI Sequence Viewer  
  XP_038485274 (Get FASTA)   NCBI Sequence Viewer  
  XP_038485275 (Get FASTA)   NCBI Sequence Viewer  
  XP_038485276 (Get FASTA)   NCBI Sequence Viewer  
  XP_533359 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000008737.6
  ENSCAFP00000039572.3
  ENSCAFP00030009730.1
  ENSCAFP00040041529.1
  ENSCAFP00845014935
  ENSCAFP00845014935.1
  ENSCAFP00845015018
  ENSCAFP00845015018.1
  ENSCAFP00845015132
  ENSCAFP00845015132.1
Ensembl Acc Id: ENSCAFP00000046490   ⟸   ENSCAFT00000090686
Ensembl Acc Id: ENSCAFP00000039572   ⟸   ENSCAFT00000043147
Ensembl Acc Id: ENSCAFP00000049043   ⟸   ENSCAFT00000062150
Ensembl Acc Id: ENSCAFP00000066605   ⟸   ENSCAFT00000064885
Ensembl Acc Id: ENSCAFP00000040597   ⟸   ENSCAFT00000043383
Ensembl Acc Id: ENSCAFP00000049046   ⟸   ENSCAFT00000081744
Ensembl Acc Id: ENSCAFP00000008737   ⟸   ENSCAFT00000009412
RefSeq Acc Id: XP_038358405   ⟸   XM_038502477
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038358401   ⟸   XM_038502473
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038358402   ⟸   XM_038502474
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038358399   ⟸   XM_038502471
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038358404   ⟸   XM_038502476
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038358400   ⟸   XM_038502472
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038358407   ⟸   XM_038502479
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038358403   ⟸   XM_038502475
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038358406   ⟸   XM_038502478
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038485272   ⟸   XM_038629344
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038485269   ⟸   XM_038629341
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038485268   ⟸   XM_038629340
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038485266   ⟸   XM_038629338
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038485271   ⟸   XM_038629343
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038485267   ⟸   XM_038629339
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038485275   ⟸   XM_038629347
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038485276   ⟸   XM_038629348
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038485270   ⟸   XM_038629342
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038485274   ⟸   XM_038629346
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038282254   ⟸   XM_038426326
- Peptide Label: isoform X7
- UniProtKB: A0A8I3NHE8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038282250   ⟸   XM_038426322
- Peptide Label: isoform X4
- UniProtKB: A0A8P0N8F2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038282249   ⟸   XM_038426321
- Peptide Label: isoform X3
- UniProtKB: A0A8P0N8F2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038282247   ⟸   XM_038426319
- Peptide Label: isoform X1
- UniProtKB: A0A8P0N8F2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038282252   ⟸   XM_038426324
- Peptide Label: isoform X6
- UniProtKB: A0A8I3NHE8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038282248   ⟸   XM_038426320
- Peptide Label: isoform X2
- UniProtKB: A0A8C0RDT2 (UniProtKB/TrEMBL),   A0A8P0N8F2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038282256   ⟸   XM_038426328
- Peptide Label: isoform X9
- UniProtKB: A0A8I3N7I4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038282257   ⟸   XM_038426329
- Peptide Label: isoform X10
- UniProtKB: A0A8I3N7I4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038282251   ⟸   XM_038426323
- Peptide Label: isoform X5
- UniProtKB: A0A8I3NHE8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038282255   ⟸   XM_038426327
- Peptide Label: isoform X8
- UniProtKB: A0A8I3N7I4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038421145   ⟸   XM_038565217
- Peptide Label: isoform X7
- UniProtKB: A0A8I3NHE8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038421142   ⟸   XM_038565214
- Peptide Label: isoform X4
- UniProtKB: A0A8P0N8F2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038421141   ⟸   XM_038565213
- Peptide Label: isoform X3
- UniProtKB: A0A8P0N8F2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038421139   ⟸   XM_038565211
- Peptide Label: isoform X1
- UniProtKB: A0A8P0N8F2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038421144   ⟸   XM_038565216
- Peptide Label: isoform X6
- UniProtKB: A0A8I3NHE8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038421140   ⟸   XM_038565212
- Peptide Label: isoform X2
- UniProtKB: A0A8C0RDT2 (UniProtKB/TrEMBL),   A0A8P0N8F2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038421147   ⟸   XM_038565219
- Peptide Label: isoform X9
- UniProtKB: A0A8I3N7I4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038421148   ⟸   XM_038565220
- Peptide Label: isoform X10
- UniProtKB: A0A8I3N7I4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038421143   ⟸   XM_038565215
- Peptide Label: isoform X5
- UniProtKB: A0A8I3NHE8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038421146   ⟸   XM_038565218
- Peptide Label: isoform X8
- UniProtKB: A0A8I3N7I4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_005632054   ⟸   XM_005631997
- Peptide Label: isoform X2
- UniProtKB: A0A8C0TY57 (UniProtKB/TrEMBL),   A0A8I3NHE8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022261898   ⟸   XM_022406190
- Peptide Label: isoform X9
- UniProtKB: A0A8C0TY57 (UniProtKB/TrEMBL),   A0A8I3NHE8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022261897   ⟸   XM_022406189
- Peptide Label: isoform X8
- UniProtKB: A0A8P0N8F2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005632053   ⟸   XM_005631996
- Peptide Label: isoform X7
- UniProtKB: A0A8P0N8F2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038315393   ⟸   XM_038459465
- Peptide Label: isoform X3
- UniProtKB: A0A8C0TY57 (UniProtKB/TrEMBL),   A0A8I3NHE8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_533359   ⟸   XM_533359
- Peptide Label: isoform X1
- UniProtKB: A0A8P0N8F2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005632055   ⟸   XM_005631998
- Peptide Label: isoform X4
- UniProtKB: A0A8P0STS5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013976993   ⟸   XM_014121518
- Peptide Label: isoform X5
- UniProtKB: A0A8P0STS5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022261899   ⟸   XM_022406191
- Peptide Label: isoform X6
- UniProtKB: A0A8P0STS5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00845015132   ⟸   ENSCAFT00845019355
Ensembl Acc Id: ENSCAFP00845015018   ⟸   ENSCAFT00845019222
Ensembl Acc Id: ENSCAFP00845014935   ⟸   ENSCAFT00845019118
Protein Domains
FF   WW

Promoters
RGD ID:13686743
Promoter ID:EPDNEW_C4811
Type:multiple initiation site
Name:PRPF40A_1
Description:pre-mRNA processing factor 40 homolog A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11953,710,046 - 53,710,106EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000005827 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030006062 UniProtKB/TrEMBL
  ENSCAFG00040025476 UniProtKB/TrEMBL
  ENSCAFG00845010834 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000009412.7 UniProtKB/TrEMBL
  ENSCAFT00000043147.3 UniProtKB/TrEMBL
  ENSCAFT00030011128.1 UniProtKB/TrEMBL
  ENSCAFT00040047571.1 UniProtKB/TrEMBL
  ENSCAFT00845019118 ENTREZGENE
  ENSCAFT00845019118.1 UniProtKB/TrEMBL
  ENSCAFT00845019222 ENTREZGENE
  ENSCAFT00845019222.1 UniProtKB/TrEMBL
  ENSCAFT00845019355 ENTREZGENE
  ENSCAFT00845019355.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.440 UniProtKB/TrEMBL
  2.20.70.10 UniProtKB/TrEMBL
InterPro FF_domain UniProtKB/TrEMBL
  FF_domain_sf UniProtKB/TrEMBL
  Prp40-like UniProtKB/TrEMBL
  WW_dom UniProtKB/TrEMBL
  WW_dom_sf UniProtKB/TrEMBL
NCBI Gene PRPF40A ENTREZGENE
PANTHER PRE-MRNA-PROCESSING FACTOR 40 HOMOLOG A UniProtKB/TrEMBL
  PTHR11864 UniProtKB/TrEMBL
Pfam PF00397 UniProtKB/TrEMBL
  PF01846 UniProtKB/TrEMBL
PROSITE PS51676 UniProtKB/TrEMBL
  WW_DOMAIN_1 UniProtKB/TrEMBL
  WW_DOMAIN_2 UniProtKB/TrEMBL
SMART SM00441 UniProtKB/TrEMBL
  SM00456 UniProtKB/TrEMBL
Superfamily-SCOP SSF51045 UniProtKB/TrEMBL
  SSF81698 UniProtKB/TrEMBL
UniProt A0A8C0RDT2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0TY57 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N5V4_CANLF UniProtKB/TrEMBL
  A0A8I3N7I4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NHE8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0N8F2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0STS5 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:45026 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-02-18 PRPF40A  pre-mRNA processing factor 40 homolog A  PRPF40A  pre-mRNA processing factor 40 homolog A  Data merged from RGD:12236889 737654 PROVISIONAL
2021-02-16 PRPF40A  pre-mRNA processing factor 40 homolog A  LOC119864507  pre-mRNA processing factor 40 homolog A  Symbol and/or name change 5135510 APPROVED