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Gene: TMEM238L (transmembrane protein 238 like) Chlorocebus sabaeus

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Symbol:

TMEM238L

Name:

transmembrane protein 238 like

RGD ID:

40895385

Description:

INVOLVED IN intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress (ortholog); ASSOCIATED WITH Colorectal Neoplasms (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

putative transmembrane protein LOC100289255 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666059	11,194,932 - 11,195,941 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Colorectal Neoplasms (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress (ISO)

Cellular Component

endoplasmic reticulum membrane (ISO)

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

TMEM238L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666059	11,194,932 - 11,195,941 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

TMEM238L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	10,794,908 - 10,804,099 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	10,794,908 - 10,804,099 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	10,698,225 - 10,707,416 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Celera	17	10,729,077 - 10,738,263 (-)	NCBI		Celera
Cytogenetic Map	17	p13.1-p12	NCBI
HuRef	17	10,598,735 - 10,607,917 (-)	NCBI		HuRef
CHM1_1	17	10,708,110 - 10,717,296 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	10,702,820 - 10,712,007 (-)	NCBI		T2T-CHM13v2.0

Tmem238l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	66,847,368 - 66,855,842 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	66,847,464 - 66,855,842 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	66,955,092 - 66,965,016 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	66,956,638 - 66,965,016 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	66,770,046 - 66,778,246 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	66,772,739 - 66,780,939 (+)	NCBI		MGSCv36	mm8
Celera	11	73,895,900 - 73,904,290 (+)	NCBI		Celera
Cytogenetic Map	11	B3	NCBI
cM Map	11	40.59	NCBI

Tmem238l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	52,148,188 - 52,161,234 (+)	NCBI		GRCr8
mRatBN7.2	10	51,647,871 - 51,662,206 (+)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	10	56,306,303 - 56,306,669 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	55,796,271 - 55,796,637 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	51,305,852 - 51,306,218 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	53,501,858 - 53,513,002 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	10	53,254,128 - 53,266,880 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	10	50,821,932 - 50,842,279 (+)	NCBI		Celera
Cytogenetic Map	10	q24	NCBI

TMEM238L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	62,944,667 - 62,947,106 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	67,754,172 - 67,765,595 (+)	NCBI		NHGRI_mPanPan1
PanPan1.1 Ensembl	17	45,597,330 - 45,597,569 (+)	Ensembl	panpan1.1		panPan2

TMEM238L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Dog10K_Boxer_Tasha	5	35,197,228 - 35,204,945 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	35,165,981 - 35,173,701 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	35,173,231 - 35,173,470 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	35,131,418 - 35,139,125 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	35,087,935 - 35,095,649 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	35,270,031 - 35,277,752 (-)	NCBI		UU_Cfam_GSD_1.0

Tmem238l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	50,171,334 - 50,172,027 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936595	3,645,712 - 3,645,951 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl

LOC110259862
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	3	7,584,024 - 7,623,253 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_037987304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_037987304 ⟹ XP_037843232

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666059	11,194,932 - 11,195,941 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_037843232	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_037843232 ⟸ XM_037987304

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	TMEM238L	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD