TMEM238L (transmembrane protein 238 like) - Rat Genome Database

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Gene: TMEM238L (transmembrane protein 238 like) Pan paniscus
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Symbol: TMEM238L
Name: transmembrane protein 238 like
RGD ID: 329347402
Description: INVOLVED IN intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress (inferred); ASSOCIATED WITH Colorectal Neoplasms (ortholog); FOUND IN endoplasmic reticulum membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transmembrane protein 238-like
RGD Orthologs
Human
Mouse
Rat
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21962,944,667 - 62,947,106 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11767,754,172 - 67,765,595 (+)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl1745,597,330 - 45,597,569 (+)Ensemblpanpan1.1panPan2


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
TMEM238L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21962,944,667 - 62,947,106 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11767,754,172 - 67,765,595 (+)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl1745,597,330 - 45,597,569 (+)Ensemblpanpan1.1panPan2
TMEM238L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381710,794,908 - 10,804,099 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1710,794,908 - 10,804,099 (-)EnsemblGRCh38hg38GRCh38
GRCh371710,698,225 - 10,707,416 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera1710,729,077 - 10,738,263 (-)NCBICelera
Cytogenetic Map17p13.1-p12NCBI
HuRef1710,598,735 - 10,607,917 (-)NCBIHuRef
CHM1_11710,708,110 - 10,717,296 (-)NCBICHM1_1
T2T-CHM13v2.01710,702,820 - 10,712,007 (-)NCBIT2T-CHM13v2.0
Tmem238l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391166,847,368 - 66,855,842 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1166,847,464 - 66,855,842 (+)EnsemblGRCm39 Ensembl
GRCm381166,955,092 - 66,965,016 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1166,956,638 - 66,965,016 (+)EnsemblGRCm38mm10GRCm38
MGSCv371166,770,046 - 66,778,246 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361166,772,739 - 66,780,939 (+)NCBIMGSCv36mm8
Celera1173,895,900 - 73,904,290 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1140.59NCBI
Tmem238l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81052,148,188 - 52,161,234 (+)NCBIGRCr8
mRatBN7.21051,647,871 - 51,662,206 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx1056,306,303 - 56,306,669 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01055,796,271 - 55,796,637 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01051,305,852 - 51,306,218 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01053,501,858 - 53,513,002 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01053,254,128 - 53,266,880 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1050,821,932 - 50,842,279 (+)NCBICelera
Cytogenetic Map10q24NCBI
TMEM238L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha535,197,228 - 35,204,945 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0535,165,981 - 35,173,701 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl535,173,231 - 35,173,470 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1535,131,418 - 35,139,125 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0535,087,935 - 35,095,649 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0535,270,031 - 35,277,752 (-)NCBIUU_Cfam_GSD_1.0
Tmem238l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560250,171,334 - 50,172,027 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365953,645,712 - 3,645,951 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
LOC110259862
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.137,584,024 - 7,623,253 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TMEM238L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366605911,194,932 - 11,195,941 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_055101923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000010880   ⟹   ENSPPAP00000002211
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1745,597,330 - 45,597,569 (+)Ensembl
RefSeq Acc Id: XM_055101923   ⟹   XP_054957898
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21962,944,667 - 62,947,106 (+)NCBI
NHGRI_mPanPan11767,754,172 - 67,765,595 (+)NCBI
Protein Sequences
Protein RefSeqs XP_054957898 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000002211.1
RefSeq Acc Id: XP_054957898   ⟸   XM_055101923
- UniProtKB: A0A2R8ZF03 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000002211   ⟸   ENSPPAT00000010880


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000010109 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000010880.1 UniProtKB/TrEMBL
InterPro TMEM238 UniProtKB/TrEMBL
NCBI Gene TMEM238L ENTREZGENE
PANTHER SI:CH211-232M10.4-RELATED UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 238-LIKE UniProtKB/TrEMBL
Pfam TMEM238 UniProtKB/TrEMBL
UniProt A0A2R8ZF03 ENTREZGENE, UniProtKB/TrEMBL