Tmem238l (transmembrane protein 238 like) - Rat Genome Database

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Gene: Tmem238l (transmembrane protein 238 like) Ictidomys tridecemlineatus
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Symbol: Tmem238l
Name: transmembrane protein 238 like
RGD ID: 124725458
Description: INVOLVED IN intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress (inferred); ASSOCIATED WITH Colorectal Neoplasms (ortholog); FOUND IN endoplasmic reticulum membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: putative transmembrane protein LOC100289255 homolog
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560250,171,334 - 50,172,027 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365953,645,712 - 3,645,951 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Tmem238l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560250,171,334 - 50,172,027 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365953,645,712 - 3,645,951 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
TMEM238L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381710,794,908 - 10,804,099 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1710,794,908 - 10,804,099 (-)EnsemblGRCh38hg38GRCh38
GRCh371710,698,225 - 10,707,416 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera1710,729,077 - 10,738,263 (-)NCBICelera
Cytogenetic Map17p13.1-p12NCBI
HuRef1710,598,735 - 10,607,917 (-)NCBIHuRef
CHM1_11710,708,110 - 10,717,296 (-)NCBICHM1_1
T2T-CHM13v2.01710,702,820 - 10,712,007 (-)NCBIT2T-CHM13v2.0
Tmem238l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391166,847,368 - 66,855,842 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1166,847,464 - 66,855,842 (+)EnsemblGRCm39 Ensembl
GRCm381166,955,092 - 66,965,016 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1166,956,638 - 66,965,016 (+)EnsemblGRCm38mm10GRCm38
MGSCv371166,770,046 - 66,778,246 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361166,772,739 - 66,780,939 (+)NCBIMGSCv36mm8
Celera1173,895,900 - 73,904,290 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1140.59NCBI
Tmem238l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81052,148,188 - 52,161,234 (+)NCBIGRCr8
mRatBN7.21051,647,871 - 51,662,206 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx1056,306,303 - 56,306,669 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01055,796,271 - 55,796,637 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01051,305,852 - 51,306,218 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01053,501,858 - 53,513,002 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01053,254,128 - 53,266,880 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1050,821,932 - 50,842,279 (+)NCBICelera
Cytogenetic Map10q24NCBI
TMEM238L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21962,944,667 - 62,947,106 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11767,754,172 - 67,765,595 (+)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl1745,597,330 - 45,597,569 (+)Ensemblpanpan1.1panPan2
TMEM238L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha535,197,228 - 35,204,945 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0535,165,981 - 35,173,701 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl535,173,231 - 35,173,470 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1535,131,418 - 35,139,125 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0535,087,935 - 35,095,649 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0535,270,031 - 35,277,752 (-)NCBIUU_Cfam_GSD_1.0
LOC110259862
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.137,584,024 - 7,623,253 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TMEM238L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366605911,194,932 - 11,195,941 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_040270610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000036391   ⟹   ENSSTOP00000026788
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365953,645,712 - 3,645,951 (-)Ensembl
RefSeq Acc Id: XM_040270610   ⟹   XP_040126544
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560250,171,334 - 50,172,027 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040126544 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000026788.1
GenBank Protein KAG3269995 (Get FASTA)   NCBI Sequence Viewer  
  KAG3269996 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040126544   ⟸   XM_040270610
Ensembl Acc Id: ENSSTOP00000026788   ⟸   ENSSTOT00000036391


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000032395 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000036391.1 UniProtKB/TrEMBL
InterPro TMEM238 UniProtKB/TrEMBL
NCBI Gene Tmem238l ENTREZGENE
PANTHER PTHR28613 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 238-LIKE UniProtKB/TrEMBL
Pfam TMEM238 UniProtKB/TrEMBL
UniProt A0A287CZT4_ICTTR UniProtKB/TrEMBL