PLIN5 (perilipin 5) - Rat Genome Database

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Gene: PLIN5 (perilipin 5) Homo sapiens
Analyze
Symbol: PLIN5
Name: perilipin 5
RGD ID: 2881444
HGNC Page HGNC:33196
Description: Predicted to enable identical protein binding activity and lipase binding activity. Predicted to be involved in several processes, including negative regulation of peroxisome proliferator activated receptor signaling pathway; positive regulation of triglyceride storage; and regulation of lipid metabolic process. Located in intracellular membrane-bounded organelle and lipid droplet.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: lipid storage droplet protein 5; LSDA5; LSDP5; MLDP; OXPAT; perilipin-5
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38194,522,531 - 4,535,224 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl194,522,531 - 4,535,224 (-)EnsemblGRCh38hg38GRCh38
GRCh37194,522,543 - 4,535,236 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36194,473,543 - 4,486,208 (-)NCBINCBI36Build 36hg18NCBI36
Celera194,461,329 - 4,473,994 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef194,284,194 - 4,296,925 (-)NCBIHuRef
CHM1_1194,522,721 - 4,535,399 (-)NCBICHM1_1
T2T-CHM13v2.0194,506,212 - 4,518,891 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PLIN5Humanamenorrhea  IAGPRGD:143516098554872ClinVar Annotator: match by term: Primary amenorrheaClinVarPMID:21681106

1 to 20 of 109 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PLIN5Human(1->4)-beta-D-glucan multiple interactionsISORGD:15570146480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of PLIN5 mRNACTDPMID:36331819
PLIN5Human1-naphthyl isothiocyanate decreases expressionISORGD:158960264804641-Naphthylisothiocyanate results in decreased expression of PLIN5 mRNACTDPMID:30723492
PLIN5Human17beta-estradiol increases expressionISORGD:15570146480464Estradiol results in increased expression of PLIN5 mRNACTDPMID:19484750|PMID:39298647
PLIN5Human17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of PLIN5 mRNACTDPMID:31614463
PLIN5Human17beta-estradiol multiple interactionsEXP 6480464[Estradiol co-treated with TGFB1 protein] results in decreased expression of PLIN5 mRNACTDPMID:30165855
PLIN5Human2,2',4,4'-Tetrabromodiphenyl ether decreases expressionISORGD:155701464804642,2',4,4'-tetrabromodiphenyl ether results in decreased expression of PLIN5 mRNACTDPMID:38040069
PLIN5Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionISORGD:15570146480464Tetrachlorodibenzodioxin results in decreased expression of PLIN5 mRNACTDPMID:19770486|PMID:25270620|PMID:28922406
PLIN5Human3,3',5,5'-tetrabromobisphenol A multiple interactionsISORGD:15896026480464tetrabromobisphenol A promotes the reaction [[Oleic Acid co-treated with Palmitic Acid] results in increased expression more ...CTDPMID:25048947
PLIN5Human3-isobutyl-1-methyl-7H-xanthine multiple interactionsEXP 6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] more ...CTDPMID:28628672
PLIN5Human4,4'-sulfonyldiphenol multiple interactionsEXP 6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] more ...CTDPMID:28628672
PLIN5Human4,4'-sulfonyldiphenol increases expressionISORGD:15570146480464bisphenol S results in increased expression of PLIN5 mRNACTDPMID:39298647
PLIN5Human4-hydroxyphenyl retinamide increases expressionISORGD:15570146480464Fenretinide results in increased expression of PLIN5 mRNACTDPMID:28973697
PLIN5Human6-propyl-2-thiouracil increases expressionISORGD:15896026480464Propylthiouracil results in increased expression of PLIN5 mRNACTDPMID:24780913
PLIN5Humanacrylamide increases expressionISORGD:15896026480464Acrylamide results in increased expression of PLIN5 mRNACTDPMID:28959563
PLIN5Humanaflatoxin B1 decreases expressionISORGD:15570146480464Aflatoxin B1 results in decreased expression of PLIN5 mRNACTDPMID:19770486
PLIN5Humanall-trans-retinoic acid decreases expressionEXP 6480464Tretinoin results in decreased expression of PLIN5 mRNACTDPMID:23724009
PLIN5Humanalpha-Zearalanol multiple interactionsISORGD:15896026480464[Zeranol co-treated with perfluorooctanoic acid] results in increased expression of PLIN5 mRNACTDPMID:35163327
PLIN5Humanamphetamine increases expressionISORGD:15896026480464Amphetamine results in increased expression of PLIN5 mRNACTDPMID:30779732
PLIN5Humanantirheumatic drug decreases expressionEXP 6480464Antirheumatic Agents results in decreased expression of PLIN5 mRNACTDPMID:24449571
PLIN5Humanbenzo[a]pyrene decreases expressionISORGD:15570146480464Benzo(a)pyrene results in decreased expression of PLIN5 mRNACTDPMID:19770486

1 to 20 of 109 rows

Biological Process
1 to 20 of 25 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PLIN5Humanlipid droplet organization involved_inISSUniProtKB:Q8BVZ1150520179 UniProtGO_REF:0000024
PLIN5Humanlipid droplet organization involved_inIEAUniProtKB:Q8BVZ1|ensembl:ENSMUSP00000019808150520179 EnsemblGO_REF:0000107
PLIN5Humanlipid storage involved_inIEAUniProtKB:Q8BVZ1|ensembl:ENSMUSP00000019808150520179 EnsemblGO_REF:0000107
PLIN5Humanlipid storage involved_inIBAFB:FBgn0030608|FB:FBgn0039114|MGI:1914218|MGI:87920|PANTHER:PTN004450669|UniProtKB:O60664|UniProtKB:Q99541150520179 GO_CentralGO_REF:0000033
PLIN5Humanmitochondrion localization involved_inIEAUniProtKB:Q8BVZ1|ensembl:ENSMUSP00000019808150520179 EnsemblGO_REF:0000107
PLIN5Humannegative regulation of fatty acid beta-oxidation involved_inISSUniProtKB:Q8BVZ1150520179 UniProtGO_REF:0000024
PLIN5Humannegative regulation of fatty acid beta-oxidation involved_inIEAUniProtKB:Q8BVZ1|ensembl:ENSMUSP00000019808150520179 EnsemblGO_REF:0000107
PLIN5Humannegative regulation of lipase activity involved_inISSUniProtKB:Q8BVZ1150520179 UniProtGO_REF:0000024
PLIN5Humannegative regulation of lipid catabolic process involved_inIEAUniProtKB:Q8BVZ1|ensembl:ENSMUSP00000019808150520179 EnsemblGO_REF:0000107
PLIN5Humannegative regulation of peroxisome proliferator activated receptor signaling pathway involved_inIEAUniProtKB:Q8BVZ1|ensembl:ENSMUSP00000019808150520179 EnsemblGO_REF:0000107
PLIN5Humannegative regulation of peroxisome proliferator activated receptor signaling pathway involved_inISSUniProtKB:Q8BVZ1150520179 UniProtGO_REF:0000024
PLIN5Humannegative regulation of reactive oxygen species metabolic process involved_inISSUniProtKB:Q8BVZ1150520179 UniProtGO_REF:0000024
PLIN5Humannegative regulation of reactive oxygen species metabolic process involved_inIEAUniProtKB:Q8BVZ1|ensembl:ENSMUSP00000019808150520179 EnsemblGO_REF:0000107
PLIN5Humannegative regulation of triglyceride catabolic process involved_inISSUniProtKB:Q8BVZ1150520179 UniProtGO_REF:0000024
PLIN5Humannegative regulation of triglyceride catabolic process involved_inIEAUniProtKB:Q8BVZ1|ensembl:ENSMUSP00000019808150520179 EnsemblGO_REF:0000107
PLIN5Humanpositive regulation of fatty acid beta-oxidation involved_inIEAUniProtKB:M0R7Z9|UniProtKB:Q8BVZ1|ensembl:ENSMUSP00000019808|ensembl:ENSRNOP00000065588150520179 EnsemblGO_REF:0000107
PLIN5Humanpositive regulation of fatty acid beta-oxidation involved_inISSUniProtKB:M0R7Z9|UniProtKB:Q8BVZ1150520179 UniProtGO_REF:0000024
PLIN5Humanpositive regulation of lipase activity involved_inISSUniProtKB:M0R7Z9150520179 UniProtGO_REF:0000024
PLIN5Humanpositive regulation of lipid storage involved_inIEAUniProtKB:M0R7Z9|ensembl:ENSRNOP00000065588150520179 EnsemblGO_REF:0000107
PLIN5Humanpositive regulation of lipid storage involved_inISSUniProtKB:M0R7Z9150520179 UniProtGO_REF:0000024
1 to 20 of 25 rows

Cellular Component
1 to 19 of 19 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PLIN5Humancytoplasm located_inISSUniProtKB:Q8BVZ1150520179 UniProtGO_REF:0000024
PLIN5Humancytoplasm located_inIEAUniProtKB-KW:KW-0963150520179 UniProtGO_REF:0000043
PLIN5Humancytoplasm located_inIEAUniProtKB:Q8BVZ1|ensembl:ENSMUSP00000019808150520179 EnsemblGO_REF:0000107
PLIN5Humancytoplasm located_inIEAUniProtKB-SubCell:SL-0086150520179 UniProtGO_REF:0000044
PLIN5Humancytosol is_active_inIBAFB:FBgn0030608|MGI:1914218|MGI:87920|PANTHER:PTN004450669|UniProtKB:O60664150520179 GO_CentralGO_REF:0000033
PLIN5Humancytosol located_inIEAUniProtKB:Q8BVZ1|ensembl:ENSMUSP00000019808150520179 EnsemblGO_REF:0000107
PLIN5Humanlipid droplet located_inISSUniProtKB:Q8BVZ1150520179 UniProtGO_REF:0000024
PLIN5Humanlipid droplet part_ofIEAUniProtKB:Q8BVZ1|ensembl:ENSMUSP00000019808150520179 EnsemblGO_REF:0000107
PLIN5Humanlipid droplet located_inIEAUniProtKB:M0R7Z9|ensembl:ENSRNOP00000065588150520179 EnsemblGO_REF:0000107
PLIN5Humanlipid droplet located_inIEAARBA:ARBA00029131150520179 UniProtGO_REF:0000117
PLIN5Humanlipid droplet located_inIEAUniProtKB-SubCell:SL-0154150520179 UniProtGO_REF:0000044
PLIN5Humanlipid droplet located_inIDA 150520179 HPAGO_REF:0000052
PLIN5Humanlipid droplet located_inIEAUniProtKB-KW:KW-0551150520179 UniProtGO_REF:0000043
PLIN5Humanlipid droplet is_active_inIBAFB:FBgn0030608|FB:FBgn0039114|MGI:87920|PANTHER:PTN004450669|RGD:1589602|RGD:728889|UniProtKB:O60664|UniProtKB:Q00G26|UniProtKB:Q99541|ZFIN:ZDB-GENE-050913-12150520179 GO_CentralGO_REF:0000033
PLIN5Humanmitochondrion located_inIEAUniProtKB-KW:KW-0496150520179 UniProtGO_REF:0000043
PLIN5Humanmitochondrion located_inIEAUniProtKB:M0R7Z9|ensembl:ENSRNOP00000065588150520179 EnsemblGO_REF:0000107
PLIN5Humanmitochondrion located_inISSUniProtKB:M0R7Z9150520179 UniProtGO_REF:0000024
PLIN5Humanmitochondrion located_inIEAUniProtKB-SubCell:SL-0173150520179 UniProtGO_REF:0000044
PLIN5Humanmitochondrion NOT|located_inISORGD:15896029068941PMID:21885430UniProtPMID:21885430|REF_RGD_ID:8553283
1 to 19 of 19 rows

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PLIN5Humanidentical protein binding enablesIEAUniProtKB:Q8BVZ1|ensembl:ENSMUSP00000019808150520179 EnsemblGO_REF:0000107
PLIN5Humanlipase binding enablesIEAUniProtKB:M0R7Z9|UniProtKB:Q8BVZ1|ensembl:ENSMUSP00000019808|ensembl:ENSRNOP00000065588150520179 EnsemblGO_REF:0000107
PLIN5Humanprotein binding enablesIPIUniProtKB:Q8WTS1150520179 PMID:32296183IntActPMID:32296183

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PLIN5HumanPrimary amenorrhea  IAGPRGD:143516098554872ClinVar Annotator: match by term: Primary amenorrheaClinVarPMID:21681106

#
Reference Title
Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:12477932   PMID:17234449   PMID:19602560   PMID:19638644   PMID:19717842   PMID:21393244   PMID:21632259   PMID:21873635   PMID:22127648   PMID:22667335   PMID:23129790   PMID:24535284  
PMID:25054327   PMID:26186194   PMID:26447519   PMID:27428080   PMID:27922115   PMID:28514442   PMID:29110300   PMID:29752569   PMID:30591149   PMID:31173228   PMID:32296183   PMID:33160079  
PMID:33961781   PMID:35220055   PMID:35401929   PMID:36134829   PMID:37218505   PMID:37290445  



PLIN5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38194,522,531 - 4,535,224 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl194,522,531 - 4,535,224 (-)EnsemblGRCh38hg38GRCh38
GRCh37194,522,543 - 4,535,236 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36194,473,543 - 4,486,208 (-)NCBINCBI36Build 36hg18NCBI36
Celera194,461,329 - 4,473,994 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef194,284,194 - 4,296,925 (-)NCBIHuRef
CHM1_1194,522,721 - 4,535,399 (-)NCBICHM1_1
T2T-CHM13v2.0194,506,212 - 4,518,891 (-)NCBIT2T-CHM13v2.0
Plin5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391756,418,601 - 56,424,606 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1756,418,601 - 56,424,596 (-)EnsemblGRCm39 Ensembl
GRCm381756,111,597 - 56,117,606 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1756,111,601 - 56,117,596 (-)EnsemblGRCm38mm10GRCm38
MGSCv371756,251,024 - 56,256,971 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361755,704,894 - 55,710,821 (-)NCBIMGSCv36mm8
Celera1759,530,262 - 59,536,209 (-)NCBICelera
Cytogenetic Map17DNCBI
cM Map1729.16NCBI
Plin5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr891,026,910 - 1,033,352 (-)NCBIGRCr8
mRatBN7.29939,745 - 946,188 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9939,747 - 946,120 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx91,386,151 - 1,392,516 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.096,733,424 - 6,739,795 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.095,691,188 - 5,697,553 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0910,956,013 - 10,961,782 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl910,956,056 - 10,961,782 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.099,943,003 - 9,948,729 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera97,561,527 - 7,567,886 (+)NCBICelera
Cytogenetic Map9q11NCBI
Plin5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554954,407,246 - 4,416,848 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554954,406,590 - 4,414,783 (+)NCBIChiLan1.0ChiLan1.0
PLIN5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2208,917,017 - 8,929,816 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1198,146,807 - 8,159,602 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0193,542,675 - 3,555,611 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1194,496,475 - 4,502,936 (-)NCBIpanpan1.1PanPan1.1panPan2
PLIN5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12055,181,171 - 55,189,369 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2055,181,198 - 55,189,366 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2054,909,690 - 54,917,493 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02055,839,605 - 55,847,423 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2055,839,463 - 55,847,422 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12054,901,592 - 54,909,392 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02055,382,123 - 55,389,929 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02055,580,396 - 55,588,202 (+)NCBIUU_Cfam_GSD_1.0
Plin5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118215,197,457 - 215,205,026 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365882,629,762 - 2,636,983 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365882,629,762 - 2,637,303 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLIN5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl274,300,619 - 74,314,315 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1274,304,613 - 74,314,314 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2274,797,979 - 74,806,072 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLIN5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.164,251,316 - 4,262,656 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl64,251,751 - 4,261,126 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660813,928,417 - 3,940,329 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plin5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248285,207,937 - 5,218,901 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248285,208,060 - 5,218,553 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in PLIN5
77 total Variants

1 to 10 of 106 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 19p13.3(chr19:4417986-4721866)x1 copy number loss See cases [RCV000051190] Chr19:4417986..4721866 [GRCh38]
Chr19:4417983..4721878 [GRCh37]
Chr19:4368983..4672878 [NCBI36]
Chr19:19p13.3
uncertain significance
GRCh38/hg38 19p13.3-13.2(chr19:265917-8564134)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052876]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052876]|See cases [RCV000052876] Chr19:265917..8564134 [GRCh38]
Chr19:265917..8629018 [GRCh37]
Chr19:216917..8535018 [NCBI36]
Chr19:19p13.3-13.2
pathogenic
GRCh38/hg38 19p13.3-13.2(chr19:1972245-9648879)x3 copy number gain See cases [RCV000052879] Chr19:1972245..9648879 [GRCh38]
Chr19:1972244..9759555 [GRCh37]
Chr19:1923244..9620555 [NCBI36]
Chr19:19p13.3-13.2
pathogenic
GRCh38/hg38 19p13.3(chr19:4008560-4763159)x3 copy number gain See cases [RCV000052880] Chr19:4008560..4763159 [GRCh38]
Chr19:4008558..4763171 [GRCh37]
Chr19:3959558..4714171 [NCBI36]
Chr19:19p13.3
pathogenic
GRCh38/hg38 19p13.3-13.2(chr19:4039158-9176125)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052881]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052881]|See cases [RCV000052881] Chr19:4039158..9176125 [GRCh38]
Chr19:4039156..9286801 [GRCh37]
Chr19:3990156..9147801 [NCBI36]
Chr19:19p13.3-13.2
pathogenic
GRCh38/hg38 19p13.3(chr19:233565-4699472)x3 copy number gain See cases [RCV000052575] Chr19:233565..4699472 [GRCh38]
Chr19:233565..4699484 [GRCh37]
Chr19:184565..4650484 [NCBI36]
Chr19:19p13.3
pathogenic
GRCh38/hg38 19p13.3(chr19:3554635-4690965)x1 copy number loss See cases [RCV000053943] Chr19:3554635..4690965 [GRCh38]
Chr19:3554633..4690977 [GRCh37]
Chr19:3505633..4641977 [NCBI36]
Chr19:19p13.3
pathogenic
NM_052972.2(LRG1):c.1038C>T (p.Ser346=) single nucleotide variant Malignant melanoma [RCV000072141] Chr19:4537946 [GRCh38]
Chr19:4537958 [GRCh37]
Chr19:4488958 [NCBI36]
Chr19:19p13.3
not provided
GRCh38/hg38 19p13.3(chr19:3947934-5196676)x3 copy number gain See cases [RCV000134164] Chr19:3947934..5196676 [GRCh38]
Chr19:3947932..5196687 [GRCh37]
Chr19:3898932..5147687 [NCBI36]
Chr19:19p13.3
pathogenic|uncertain significance
GRCh38/hg38 19p13.3(chr19:3338024-4833139)x1 copy number loss See cases [RCV000134482] Chr19:3338024..4833139 [GRCh38]
Chr19:3338022..4833151 [GRCh37]
Chr19:3289022..4784151 [NCBI36]
Chr19:19p13.3
pathogenic
1 to 10 of 106 rows

Predicted Target Of
Summary Value
Count of predictions:2663
Count of miRNA genes:982
Interacting mature miRNAs:1193
Transcripts:ENST00000381848, ENST00000586133, ENST00000588887, ENST00000589728, ENST00000590350, ENST00000592610
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298499UAE1_HUrinary albumin excretion QTL 1 (human)2.730.0009Urinary albumin excretionurine albumin:creatinine ratio (ACR)19116075902Human
1643451SLIPL6_HSerum lipid level QTL 6 (human)2.190.0008Lipid level19116075902Human
1581534BP76_HBlood pressure QTL 76 (human)20.001Blood pressurepulse pressure19116075902Human
1581535BP65_HBlood pressure QTL 65 (human)3.10.001Blood pressurepulse pressure19116075902Human
2314591INSUL4_HInsulin level QTL 4 (human)3.80.000038Insulin levelfasting19116075902Human
1298476BP3_HBlood pressure QTL 3 (human)2.4Blood pressuresystolic19116075902Human

RH91548  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37194,537,370 - 4,537,547UniSTSGRCh37
Build 36194,488,370 - 4,488,547RGDNCBI36
Celera194,476,156 - 4,476,333RGD
Cytogenetic Map19p13.3UniSTS
HuRef194,299,087 - 4,299,264UniSTS
GeneMap99-GB4 RH Map1932.22UniSTS
RH80514  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37194,537,264 - 4,537,514UniSTSGRCh37
Build 36194,488,264 - 4,488,514RGDNCBI36
Celera194,476,050 - 4,476,300RGD
Cytogenetic Map19p13.3UniSTS
HuRef194,298,981 - 4,299,231UniSTS
GeneMap99-GB4 RH Map1931.92UniSTS
RH48973  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37194,537,145 - 4,537,292UniSTSGRCh37
Build 36194,488,145 - 4,488,292RGDNCBI36
Celera194,475,931 - 4,476,078RGD
Cytogenetic Map19p13.3UniSTS
HuRef194,298,862 - 4,299,009UniSTS
GeneMap99-GB4 RH Map1932.33UniSTS
RH41861  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map19p13.3UniSTS
HuRef194,284,232 - 4,284,390UniSTS
GeneMap99-GB4 RH Map1932.22UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2412 2788 2241 4897 1714 2295 4 619 1616 460 2220 6938 6136 39 3709 1 836 1711 1567 172 1



Ensembl Acc Id: ENST00000381848   ⟹   ENSP00000371272
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl194,522,531 - 4,535,224 (-)Ensembl
Ensembl Acc Id: ENST00000586133   ⟹   ENSP00000468027
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl194,533,249 - 4,535,224 (-)Ensembl
Ensembl Acc Id: ENST00000588887
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl194,529,410 - 4,535,224 (-)Ensembl
Ensembl Acc Id: ENST00000589728
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl194,523,909 - 4,525,849 (-)Ensembl
Ensembl Acc Id: ENST00000590350
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl194,529,278 - 4,535,185 (-)Ensembl
Ensembl Acc Id: ENST00000592610   ⟹   ENSP00000464926
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl194,532,372 - 4,534,274 (-)Ensembl
RefSeq Acc Id: NM_001013706   ⟹   NP_001013728
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38194,522,531 - 4,535,224 (-)NCBI
GRCh37194,522,543 - 4,535,208 (-)RGD
Build 36194,473,543 - 4,486,208 (-)NCBI Archive
Celera194,461,329 - 4,473,994 (-)RGD
HuRef194,284,194 - 4,296,925 (-)ENTREZGENE
CHM1_1194,522,721 - 4,535,399 (-)NCBI
T2T-CHM13v2.0194,506,212 - 4,518,891 (-)NCBI
Sequence:
Protein RefSeqs NP_001013728 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI31525 (Get FASTA)   NCBI Sequence Viewer  
  ABH07519 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000371272
  ENSP00000371272.2
GenBank Protein Q00G26 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001013728   ⟸   NM_001013706
- UniProtKB: A2RRC1 (UniProtKB/Swiss-Prot),   Q6ZS68 (UniProtKB/Swiss-Prot),   Q00G26 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSP00000468027   ⟸   ENST00000586133
Ensembl Acc Id: ENSP00000371272   ⟸   ENST00000381848
Ensembl Acc Id: ENSP00000464926   ⟸   ENST00000592610

Name Modeler Protein Id AA Range Protein Structure
AF-Q00G26-F1-model_v2 AlphaFold Q00G26 1-463 view protein structure

RGD ID:6795911
Promoter ID:HG_KWN:28586
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:NM_001013706
Position:
Human AssemblyChrPosition (strand)Source
Build 36194,485,926 - 4,486,426 (-)MPROMDB
RGD ID:6795799
Promoter ID:HG_KWN:28587
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000306390,   UC002MAT.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36194,490,814 - 4,491,314 (-)MPROMDB
RGD ID:7238107
Promoter ID:EPDNEW_H24799
Type:initiation region
Name:PLIN5_2
Description:perilipin 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H24801  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38194,535,224 - 4,535,284EPDNEW
RGD ID:7238111
Promoter ID:EPDNEW_H24801
Type:initiation region
Name:PLIN5_1
Description:perilipin 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H24799  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38194,540,036 - 4,540,096EPDNEW


1 to 25 of 25 rows
Database
Acc Id
Source(s)
COSMIC PLIN5 COSMIC
Ensembl Genes ENSG00000214456 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000381848 ENTREZGENE
  ENST00000381848.7 UniProtKB/Swiss-Prot
Gene3D-CATH Flagellar protein FliS UniProtKB/Swiss-Prot
  Perilipin, alpha-beta domain UniProtKB/Swiss-Prot
GTEx ENSG00000214456 GTEx
HGNC ID HGNC:33196 ENTREZGENE
Human Proteome Map PLIN5 Human Proteome Map
InterPro Perilipin UniProtKB/Swiss-Prot
KEGG Report hsa:440503 UniProtKB/Swiss-Prot
NCBI Gene 440503 ENTREZGENE
OMIM 613248 OMIM
PANTHER PERILIPIN UniProtKB/Swiss-Prot
  PERILIPIN-5 UniProtKB/Swiss-Prot
Pfam Perilipin UniProtKB/Swiss-Prot
PharmGKB PA165394043 PharmGKB
PIRSF PAT UniProtKB/Swiss-Prot
Superfamily-SCOP Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain UniProtKB/Swiss-Prot
UniProt A2RRC1 ENTREZGENE
  K7EIX1_HUMAN UniProtKB/TrEMBL
  PLIN5_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q6ZS68 ENTREZGENE
UniProt Secondary A2RRC1 UniProtKB/Swiss-Prot
  Q6ZS68 UniProtKB/Swiss-Prot
1 to 25 of 25 rows