Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Col12a1 (collagen type XII alpha 1 chain) Rattus norvegicus
Analyze
Symbol: Col12a1
Name: collagen type XII alpha 1 chain
Description: Predicted to have extracellular matrix structural constituent. Predicted to be involved in endodermal cell differentiation. Localizes to the collagen type XII trimer. Human ortholog(s) of this gene implicated in Ullrich congenital muscular dystrophy. Orthologous to human COL12A1 (collagen type XII alpha 1 chain); PARTICIPATES IN syndecan signaling pathway; INTERACTS WITH (RS)-amphetamine; (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; 1-naphthyl isothiocyanate.
Type: protein-coding
RefSeq Status: MODEL
Also known as: collagen alpha-1(XII) chain; collagen, type XII, alpha 1; LOW QUALITY PROTEIN: collagen alpha-1(XII) chain; Procollagen type XII alpha 1; procollagen, type XII, alpha 1
Orthologs:
Homo sapiens (human) : COL12A1 (collagen type XII alpha 1 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col12a1 (collagen, type XII, alpha 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col12a1 (collagen type XII alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL12A1 (collagen type XII alpha 1 chain)
Canis lupus familiaris (dog) : COL12A1 (collagen type XII alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col12a1 (collagen type XII alpha 1 chain)
Sus scrofa (pig) : COL12A1 (collagen type XII alpha 1 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0887,042,820 - 87,150,701 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0886,584,555 - 86,701,809 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4884,641,358 - 84,756,923 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1884,660,818 - 84,677,966 (-)NCBI
Celera880,273,757 - 80,389,987 (-)NCBICelera
Cytogenetic Map8q31NCBI
RH 3.4 Map10859.0RGD
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Col12a1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 2374
Created: 2000-05-25
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.