Col12a1 (collagen, type XII, alpha 1) - Rat Genome Database

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Gene: Col12a1 (collagen, type XII, alpha 1) Mus musculus
Analyze
Symbol: Col12a1
Name: collagen, type XII, alpha 1
RGD ID: 10372
MGI Page MGI
Description: Predicted to be an extracellular matrix structural constituent conferring tensile strength. Predicted to be involved in endodermal cell differentiation. Predicted to act upstream of or within cell adhesion. Located in collagen-containing extracellular matrix and extracellular space. Is expressed in several structures, including connective tissue; mitral valve; sensory organ; skeleton; and skin. Human ortholog(s) of this gene implicated in Bethlem myopathy and Ullrich congenital muscular dystrophy. Orthologous to human COL12A1 (collagen type XII alpha 1 chain).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AW743884; collagen alpha-1(XII) chain; procollagen, type XII, alpha 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39979,506,269 - 79,628,423 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl979,506,273 - 79,626,113 (-)EnsemblGRCm39 Ensembl
GRCm38979,598,987 - 79,721,141 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl979,598,991 - 79,718,831 (-)EnsemblGRCm38mm10GRCm38
MGSCv37979,446,798 - 79,566,485 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36979,387,443 - 79,504,149 (-)NCBIMGSCv36mm8
Celera976,744,488 - 76,862,823 (-)NCBICelera
Cytogenetic Map9E1NCBI
cM Map943.82NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
9-cis-retinoic acid  (ISO)
acrolein  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (EXP,ISO)
alpha-pinene  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (EXP)
atrazine  (ISO)
bazedoxifene  (ISO)
benzo[a]pyrene  (EXP,ISO)
Benzo[ghi]perylene  (EXP)
bexarotene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
cadmium atom  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chlordecone  (EXP)
cisplatin  (ISO)
clobetasol  (EXP)
clothianidin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (EXP)
Cuprizon  (ISO)
cyclosporin A  (EXP,ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (EXP,ISO)
diarsenic trioxide  (EXP)
dibutyl phthalate  (ISO)
dioxygen  (ISO)
disulfiram  (ISO)
diuron  (ISO)
dopamine  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
fenamidone  (EXP)
fenoldopam  (ISO)
flavonoids  (ISO)
geldanamycin  (ISO)
genistein  (EXP,ISO)
indometacin  (ISO)
ivermectin  (ISO)
lipopolysaccharide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
mercury dibromide  (ISO)
methimazole  (ISO)
methylmercury chloride  (ISO)
mifepristone  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
N,N-diethyl-m-toluamide  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodimethylamine  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
paracetamol  (ISO)
paraquat  (ISO)
PCB138  (EXP)
pentane-2,3-dione  (ISO)
permethrin  (ISO)
Phenelzine  (EXP)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
PhIP  (ISO)
pirinixic acid  (EXP)
potassium chromate  (ISO)
progesterone  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
simvastatin  (EXP)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
Soman  (ISO)
sunitinib  (ISO)
Tesaglitazar  (ISO)
titanium dioxide  (ISO)
topotecan  (ISO)
trimellitic anhydride  (EXP)
Triptolide  (EXP)
triptonide  (EXP)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. New semidominant mutations that affect mouse development. Bogani D, etal., Genesis 2004 Oct;40(2):109-117.
2. Analysis of genes from inner ear developmental-stage cDNA subtraction reveals molecular regionalization of the otic capsule. Ficker M, etal., Dev Biol 2004 Apr 1;268(1):7-23.
3. Structural variation of type XII collagen at its carboxyl-terminal NC1 domain generated by tissue-specific alternative splicing. Kania AM, etal., J Biol Chem 1999 Jul 30;274(31):22053-9.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1427837   PMID:8334298   PMID:8601036   PMID:8649810   PMID:8889548   PMID:9143499   PMID:9796779   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11201046  
PMID:11217851   PMID:14691545   PMID:15634692   PMID:15817462   PMID:16141072   PMID:16141073   PMID:16495310   PMID:16537572   PMID:18816857   PMID:18957791   PMID:19304887   PMID:19864314  
PMID:21173153   PMID:21670218   PMID:21677750   PMID:21873635   PMID:22159717   PMID:22969073   PMID:23599329   PMID:23658023   PMID:24006456   PMID:24334604   PMID:24952961   PMID:25344368  
PMID:26073538   PMID:26753503   PMID:27527664   PMID:28071719   PMID:28159809   PMID:28511701   PMID:28824450   PMID:29084951   PMID:30504126   PMID:32325033   PMID:32462201   PMID:32890632  
PMID:33096204   PMID:33201874   PMID:33580754   PMID:34248495   PMID:34774848   PMID:35831953   PMID:36311462   PMID:36967080   PMID:37160119  


Genomics

Comparative Map Data
Col12a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39979,506,269 - 79,628,423 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl979,506,273 - 79,626,113 (-)EnsemblGRCm39 Ensembl
GRCm38979,598,987 - 79,721,141 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl979,598,991 - 79,718,831 (-)EnsemblGRCm38mm10GRCm38
MGSCv37979,446,798 - 79,566,485 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36979,387,443 - 79,504,149 (-)NCBIMGSCv36mm8
Celera976,744,488 - 76,862,823 (-)NCBICelera
Cytogenetic Map9E1NCBI
cM Map943.82NCBI
COL12A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38675,084,326 - 75,206,053 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl675,084,326 - 75,206,267 (-)EnsemblGRCh38hg38GRCh38
GRCh37675,794,042 - 75,915,769 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36675,850,762 - 75,972,343 (-)NCBINCBI36Build 36hg18NCBI36
Build 34675,850,762 - 75,972,290NCBI
Celera676,187,813 - 76,309,373 (-)NCBICelera
Cytogenetic Map6q13-q14.1NCBI
HuRef672,993,071 - 73,114,767 (-)NCBIHuRef
CHM1_1675,960,467 - 76,082,046 (-)NCBICHM1_1
T2T-CHM13v2.0676,261,502 - 76,383,203 (-)NCBIT2T-CHM13v2.0
Col12a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8889,427,834 - 89,545,886 (-)NCBIGRCr8
mRatBN7.2880,547,592 - 80,665,665 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl880,547,593 - 80,665,686 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0887,042,820 - 87,150,701 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl887,040,799 - 87,158,368 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0886,584,555 - 86,701,809 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4884,641,358 - 84,756,923 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1884,660,818 - 84,677,966 (-)NCBI
Celera880,273,757 - 80,389,987 (-)NCBICelera
RH 3.4 Map10859.0RGD
Cytogenetic Map8q31NCBI
Col12a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554888,131,846 - 8,240,777 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554888,128,816 - 8,240,714 (+)NCBIChiLan1.0ChiLan1.0
COL12A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2595,131,719 - 95,284,459 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1693,009,460 - 93,162,227 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0672,927,897 - 73,049,168 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1676,219,319 - 76,340,496 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl676,219,319 - 76,340,496 (-)Ensemblpanpan1.1panPan2
COL12A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11236,720,686 - 36,838,321 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1236,646,408 - 36,838,622 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1236,591,487 - 36,714,157 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01237,264,259 - 37,387,691 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1237,266,365 - 37,537,523 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11236,828,942 - 36,945,160 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01236,819,169 - 36,935,951 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01236,947,167 - 37,063,520 (-)NCBIUU_Cfam_GSD_1.0
Col12a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494672,151,620 - 72,263,479 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936788533,802 - 645,907 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936788533,811 - 645,821 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COL12A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl190,744,612 - 90,875,118 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1190,744,409 - 90,875,127 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21101,693,208 - 101,890,887 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COL12A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11783,473 - 205,366 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1786,992 - 204,504 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660585,895,568 - 6,019,042 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Col12a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248192,086,512 - 2,197,951 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248192,085,654 - 2,200,843 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Col12a1
4302 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2013
Count of miRNA genes:669
Interacting mature miRNAs:818
Transcripts:ENSMUST00000071750, ENSMUST00000121227, ENSMUST00000122827, ENSMUST00000135009, ENSMUST00000141667, ENSMUST00000150289, ENSMUST00000180083
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
1300563Pgia5_mproteoglycan induced arthritis 5 (mouse)Not determined94883105682831177Mouse
1300716Cd4ts4_mCD4 T cell subset 4 (mouse)Not determined94883105682831177Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49452421101406120Mouse
14746993Manh66_mmandible shape 66 (mouse)94981404883814048Mouse
1301184Bdln4_mbody length 4 (mouse)Not determined95015132084151448Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95203447899792481Mouse
12790990Tgl7_mtriglyceride 7 (mouse)95455996088559960Mouse
10043877Adip21_madiposity 21 (mouse)Not determined95643910890439255Mouse
4141676Neogq1_mneonatal growth QTL 1 (mouse)Not determined95780504786121973Mouse
1301803Stheal9_msoft tissue heal 9 (mouse)Not determined95902438793024534Mouse
1301172Fembrs6_mfemur breaking strength 6 (mouse)Not determined95902438793024534Mouse
1301456Adip5_madiposity 5 (mouse)Not determined95936994693370128Mouse
1300848Skull13_mskull morphology 13 (mouse)Not determined95936994693370128Mouse
5491195Mobq8_mmultigenic obesity QTL 8 (mouse)Not determined95936994693370128Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959897283109089068Mouse
1301611Lrnx3_mlearning contextual 3 (mouse)Not determined96214976796149881Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63239711120191934Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63239711120191934Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963239711120191934Mouse
11081165Psl6_mpromotion susceptibility QTL 6 (mouse)96504119195522808Mouse
1301290Smgd1_msubmucosal gland distribution 1 (mouse)Not determined96583105686577967Mouse
1301636Lith5_mlithogenic gene 5 (mouse)Not determined966089077100089175Mouse
10045638Heal29_mwound healing/regeneration 29 (mouse)Not determined967006220101006220Mouse
1357610Vtbt8_mvertebral trabecular bone trait 8 (mouse)Not determined968779563102779705Mouse
1301924Bmd10_mbone mineral density 10 (mouse)Not determined968779563102779705Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969121898103121973Mouse
10412174Habiir4_mhyperoxic acute lung injury imprinted region 4 (mouse)Not determined96926774798701707Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969428566103428698Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972859058106859205Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972859058106859205Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974250230108250378Mouse
1301914Ksc1_mkeratinocyte stem cell locus 1 (mouse)Not determined97540903779998332Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975682646114303447Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975682646114303447Mouse
1301869Tbbmd4_mtotal body bone mineral density 4 (mouse)Not determined976024387101406120Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976417989110418183Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978522698112522808Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979279863113279941Mouse

Markers in Region
AW743371  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38979,600,648 - 79,600,904UniSTSGRCm38
MGSCv37979,448,455 - 79,448,711UniSTSGRCm37
Celera976,746,145 - 76,746,401UniSTS
Cytogenetic Map9E1UniSTS
cM Map943.0UniSTS
Whitehead/MRC_RH9722.44UniSTS
AW743884  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38979,599,111 - 79,599,373UniSTSGRCm38
MGSCv37979,446,918 - 79,447,180UniSTSGRCm37
Celera976,744,608 - 76,744,870UniSTS
Cytogenetic Map9E1UniSTS
cM Map943.0UniSTS
Whitehead/MRC_RH9721.78UniSTS
U25652  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38979,602,003 - 79,602,146UniSTSGRCm38
MGSCv37979,449,810 - 79,449,953UniSTSGRCm37
Celera976,747,498 - 76,747,641UniSTS
Cytogenetic Map9E1UniSTS
cM Map943.0UniSTS
Whitehead/MRC_RH9778.95UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001290308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC157477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC166055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH004089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB612557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE686600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM963265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ714832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA315556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB722900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF532120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF535620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK624229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN669497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR516558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U25652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U57095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000071750   ⟹   ENSMUSP00000071662
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl979,506,273 - 79,625,800 (-)Ensembl
GRCm38.p6 Ensembl979,598,991 - 79,718,518 (-)Ensembl
RefSeq Acc Id: ENSMUST00000121227   ⟹   ENSMUSP00000112604
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl979,509,041 - 79,626,002 (-)Ensembl
GRCm38.p6 Ensembl979,601,759 - 79,718,720 (-)Ensembl
RefSeq Acc Id: ENSMUST00000122827
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl979,619,816 - 79,626,113 (-)Ensembl
GRCm38.p6 Ensembl979,712,534 - 79,718,831 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135009   ⟹   ENSMUSP00000123455
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl979,506,273 - 79,520,252 (-)Ensembl
GRCm38.p6 Ensembl979,598,991 - 79,612,970 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141667
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl979,622,187 - 79,625,776 (-)Ensembl
GRCm38.p6 Ensembl979,714,905 - 79,718,494 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150289
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl979,599,310 - 79,626,002 (-)Ensembl
GRCm38.p6 Ensembl979,692,028 - 79,718,720 (-)Ensembl
RefSeq Acc Id: NM_001290308   ⟹   NP_001277237
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39979,506,269 - 79,626,004 (-)NCBI
GRCm38979,598,987 - 79,718,722 (-)NCBI
Celera976,744,484 - 76,862,867 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006510797   ⟹   XP_006510860
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39979,506,273 - 79,628,423 (-)NCBI
GRCm38979,598,991 - 79,721,141 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006510800   ⟹   XP_006510863
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39979,506,273 - 79,626,520 (-)NCBI
GRCm38979,598,991 - 79,719,059 (-)NCBI
Sequence:
RefSeq Acc Id: XP_006510860   ⟸   XM_006510797
- Peptide Label: isoform X1
- UniProtKB: Q60847 (UniProtKB/Swiss-Prot),   P70322 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006510863   ⟸   XM_006510800
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001277237   ⟸   NM_001290308
- Peptide Label: precursor
- UniProtKB: E9PX70 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000071662   ⟸   ENSMUST00000071750
RefSeq Acc Id: ENSMUSP00000123455   ⟸   ENSMUST00000135009
RefSeq Acc Id: ENSMUSP00000112604   ⟸   ENSMUST00000121227
Promoters
RGD ID:6844341
Promoter ID:MM_KWN:58180
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B4,   MEF_B6
Transcripts:OTTMUST00000050655
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36979,460,681 - 79,461,232 (-)MPROMDB
RGD ID:6844346
Promoter ID:MM_KWN:58181
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B6
Transcripts:UC009QUS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36979,487,681 - 79,488,182 (-)MPROMDB
RGD ID:6844345
Promoter ID:MM_KWN:58183
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000071750,   ENSMUST00000081475,   ENSMUST00000121227,   NM_007730,   OTTMUST00000050656,   OTTMUST00000050657,   OTTMUST00000050658
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36979,566,144 - 79,566,644 (-)MPROMDB
RGD ID:8670288
Promoter ID:EPDNEW_M13174
Type:initiation region
Name:Col12a1_1
Description:Mus musculus collagen, type XII, alpha 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38979,718,641 - 79,718,701EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88448 AgrOrtholog
Ensembl Genes ENSMUSG00000032332 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000071750 ENTREZGENE
  ENSMUST00000071750.13 UniProtKB/Swiss-Prot
  ENSMUST00000121227.8 UniProtKB/TrEMBL
  ENSMUST00000135009.8 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.200 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.410 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Collagen UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TSPN-like_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWF_A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12816 UniProtKB/Swiss-Prot
MGD MGI:88448 ENTREZGENE
NCBI Gene 12816 ENTREZGENE
PANTHER COLLAGEN ALPHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  COLLAGEN ALPHA UniProtKB/TrEMBL
  COLLAGEN ALPHA-1(XII) CHAIN UniProtKB/TrEMBL
  COLLAGEN ALPHA-1(XXI) CHAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FIBRILLAR COLLAGEN NC1 DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam Collagen UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  fn3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Col12a1 PhenoGen
PRINTS VWFADOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWFA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TSPN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF53300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt COCA1_MOUSE UniProtKB/Swiss-Prot
  E9PX70 ENTREZGENE, UniProtKB/TrEMBL
  F6WIM8_MOUSE UniProtKB/TrEMBL
  P70322 ENTREZGENE
  Q3TNZ7_MOUSE UniProtKB/TrEMBL
  Q60847 ENTREZGENE
UniProt Secondary P70322 UniProtKB/Swiss-Prot