Col12a1 (collagen, type XII, alpha 1) - Rat Genome Database
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Gene: Col12a1 (collagen, type XII, alpha 1) Mus musculus
Analyze
Symbol: Col12a1
Name: collagen, type XII, alpha 1
RGD ID: 10372
MGI Page MGI
Description: Is expressed in several structures, including connective tissue; mitral valve; sensory organ; skeleton; and skin. Human ortholog(s) of this gene implicated in Ullrich congenital muscular dystrophy. Orthologous to human COL12A1 (collagen type XII alpha 1 chain); PARTICIPATES IN syndecan signaling pathway; INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AW743884; collagen alpha-1(XII) chain; procollagen, type XII, alpha 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39979,506,269 - 79,628,423 (-)NCBIGRCm39mm39
GRCm39 Ensembl979,506,273 - 79,626,113 (-)Ensembl
GRCm38979,598,987 - 79,721,141 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl979,598,991 - 79,718,831 (-)EnsemblGRCm38mm10GRCm38
MGSCv37979,446,798 - 79,566,485 (-)NCBIGRCm37mm9NCBIm37
MGSCv36979,387,443 - 79,504,149 (-)NCBImm8
Celera976,744,488 - 76,862,823 (-)NCBICelera
Cytogenetic Map9E1NCBI
cM Map943.82NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
9-cis-retinoic acid  (ISO)
acrolein  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (EXP,ISO)
alpha-pinene  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
bazedoxifene  (ISO)
benzo[a]pyrene  (EXP,ISO)
Benzo[ghi]perylene  (EXP)
bexarotene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
cadmium atom  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
chlordecone  (EXP)
cisplatin  (ISO)
clobetasol  (EXP)
clothianidin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (EXP)
cyclosporin A  (EXP,ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (EXP,ISO)
dibutyl phthalate  (ISO)
disulfiram  (ISO)
diuron  (ISO)
dopamine  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (EXP)
fenamidone  (EXP)
fenoldopam  (ISO)
flavonoids  (ISO)
geldanamycin  (ISO)
genistein  (EXP,ISO)
indometacin  (ISO)
lipopolysaccharide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
mercury dibromide  (ISO)
methylmercury chloride  (ISO)
mifepristone  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodimethylamine  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
oxaliplatin  (ISO)
ozone  (ISO)
paracetamol  (ISO)
PCB138  (EXP)
pentane-2,3-dione  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
PhIP  (ISO)
pirinixic acid  (EXP)
potassium chromate  (ISO)
progesterone  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
simvastatin  (EXP)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
Soman  (ISO)
sunitinib  (ISO)
Tesaglitazar  (ISO)
titanium dioxide  (ISO)
topotecan  (ISO)
trimellitic anhydride  (EXP)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:1427837   PMID:8334298   PMID:8601036   PMID:8649810   PMID:8889548   PMID:9143499   PMID:9796779   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11201046  
PMID:11217851   PMID:14691545   PMID:15634692   PMID:15817462   PMID:16141072   PMID:16141073   PMID:16495310   PMID:16537572   PMID:18816857   PMID:18957791   PMID:19304887   PMID:21670218  
PMID:21677750   PMID:21873635   PMID:22159717   PMID:22969073   PMID:23599329   PMID:23658023   PMID:24006456   PMID:24334604   PMID:24952961   PMID:25344368   PMID:26073538   PMID:26753503  
PMID:27527664   PMID:28071719   PMID:28159809   PMID:28511701   PMID:28824450   PMID:29084951   PMID:30504126   PMID:32325033   PMID:32890632   PMID:33201874  


Genomics

Comparative Map Data
Col12a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39979,506,269 - 79,628,423 (-)NCBIGRCm39mm39
GRCm39 Ensembl979,506,273 - 79,626,113 (-)Ensembl
GRCm38979,598,987 - 79,721,141 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl979,598,991 - 79,718,831 (-)EnsemblGRCm38mm10GRCm38
MGSCv37979,446,798 - 79,566,485 (-)NCBIGRCm37mm9NCBIm37
MGSCv36979,387,443 - 79,504,149 (-)NCBImm8
Celera976,744,488 - 76,862,823 (-)NCBICelera
Cytogenetic Map9E1NCBI
cM Map943.82NCBI
COL12A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl675,084,326 - 75,206,053 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl675,084,326 - 75,206,267 (-)EnsemblGRCh38hg38GRCh38
GRCh38675,084,326 - 75,206,262 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37675,794,042 - 75,915,769 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36675,850,762 - 75,972,343 (-)NCBINCBI36hg18NCBI36
Build 34675,850,762 - 75,972,290NCBI
Celera676,187,813 - 76,309,373 (-)NCBI
Cytogenetic Map6q13-q14.1NCBI
HuRef672,993,071 - 73,114,767 (-)NCBIHuRef
CHM1_1675,960,467 - 76,082,046 (-)NCBICHM1_1
Col12a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2880,547,592 - 80,665,665 (-)NCBI
Rnor_6.0 Ensembl887,040,799 - 87,158,368 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0887,042,820 - 87,150,701 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0886,584,555 - 86,701,809 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4884,641,358 - 84,756,923 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1884,660,818 - 84,677,966 (-)NCBI
Celera880,273,757 - 80,389,987 (-)NCBICelera
RH 3.4 Map10859.0RGD
Cytogenetic Map8q31NCBI
Col12a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554888,131,846 - 8,240,777 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554888,128,816 - 8,240,714 (+)NCBIChiLan1.0ChiLan1.0
COL12A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1676,219,319 - 76,340,496 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl676,219,319 - 76,340,496 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0672,927,897 - 73,049,168 (-)NCBIMhudiblu_PPA_v0panPan3
COL12A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1236,646,408 - 36,838,622 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11236,720,686 - 36,838,321 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Col12a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936788533,811 - 645,821 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COL12A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl190,744,429 - 90,875,118 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1190,744,409 - 90,875,127 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21101,693,208 - 101,890,887 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COL12A1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11783,473 - 205,366 (+)NCBI
ChlSab1.1 Ensembl1786,992 - 204,504 (+)Ensembl
Col12a1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248192,085,654 - 2,200,843 (-)NCBI

Position Markers
AW743371  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38979,600,648 - 79,600,904UniSTSGRCm38
MGSCv37979,448,455 - 79,448,711UniSTSGRCm37
Celera976,746,145 - 76,746,401UniSTS
Cytogenetic Map9E1UniSTS
cM Map943.0UniSTS
Whitehead/MRC_RH9722.44UniSTS
AW743884  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38979,599,111 - 79,599,373UniSTSGRCm38
MGSCv37979,446,918 - 79,447,180UniSTSGRCm37
Celera976,744,608 - 76,744,870UniSTS
Cytogenetic Map9E1UniSTS
cM Map943.0UniSTS
Whitehead/MRC_RH9721.78UniSTS
U25652  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38979,602,003 - 79,602,146UniSTSGRCm38
MGSCv37979,449,810 - 79,449,953UniSTSGRCm37
Celera976,747,498 - 76,747,641UniSTS
Cytogenetic Map9E1UniSTS
cM Map943.0UniSTS
Whitehead/MRC_RH9778.95UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93739490198819654Mouse
1300716Cd4ts4_mCD4 T cell subset 4 (mouse)Not determined94892377482923895Mouse
1300563Pgia5_mproteoglycan induced arthritis 5 (mouse)Not determined94892377482923895Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49541121101528921Mouse
14746993Manh66_mmandible shape 66 (mouse)94990676683906766Mouse
1301184Bdln4_mbody length 4 (mouse)Not determined95024403884244166Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95212317899910428Mouse
12790990Tgl7_mtriglyceride 7 (mouse)95465267888652678Mouse
10043877Adip21_madiposity 21 (mouse)Not determined95653182690531973Mouse
4141676Neogq1_mneonatal growth QTL 1 (mouse)Not determined95789776486239920Mouse
1301172Fembrs6_mfemur breaking strength 6 (mouse)Not determined95911710593117252Mouse
1301803Stheal9_msoft tissue heal 9 (mouse)Not determined95911710593117252Mouse
5491195Mobq8_mmultigenic obesity QTL 8 (mouse)Not determined95946266493462846Mouse
1300848Skull13_mskull morphology 13 (mouse)Not determined95946266493462846Mouse
1301456Adip5_madiposity 5 (mouse)Not determined95946266493462846Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
1301611Lrnx3_mlearning contextual 3 (mouse)Not determined96224248596242599Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
11081165Psl6_mpromotion susceptibility QTL 6 (mouse)96513390995640755Mouse
1301290Smgd1_msubmucosal gland distribution 1 (mouse)Not determined96592377486695914Mouse
1301636Lith5_mlithogenic gene 5 (mouse)Not determined966207024100207122Mouse
10045638Heal29_mwound healing/regeneration 29 (mouse)Not determined967124167101124167Mouse
1357610Vtbt8_mvertebral trabecular bone trait 8 (mouse)Not determined968897510102897652Mouse
1301924Bmd10_mbone mineral density 10 (mouse)Not determined968897510102897652Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969239845103239920Mouse
10412174Habiir4_mhyperoxic acute lung injury imprinted region 4 (mouse)Not determined96936046598819654Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969546513103546645Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972977005106977152Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972977005106977152Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974368177108368325Mouse
1301914Ksc1_mkeratinocyte stem cell locus 1 (mouse)Not determined97550175580091050Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301869Tbbmd4_mtotal body bone mineral density 4 (mouse)Not determined976117105101528921Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2013
Count of miRNA genes:669
Interacting mature miRNAs:818
Transcripts:ENSMUST00000071750, ENSMUST00000121227, ENSMUST00000122827, ENSMUST00000135009, ENSMUST00000141667, ENSMUST00000150289, ENSMUST00000180083
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001290308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC157477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC166055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH004089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB612557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE686600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM963265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ714832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA315556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB722900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF532120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF535620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK624229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN669497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR516558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U25652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U57095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000071750   ⟹   ENSMUSP00000071662
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl979,598,991 - 79,718,518 (-)Ensembl
RefSeq Acc Id: ENSMUST00000121227   ⟹   ENSMUSP00000112604
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl979,601,759 - 79,718,720 (-)Ensembl
RefSeq Acc Id: ENSMUST00000122827
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl979,712,534 - 79,718,831 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135009   ⟹   ENSMUSP00000123455
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl979,598,991 - 79,612,970 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141667
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl979,714,905 - 79,718,494 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150289
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl979,692,028 - 79,718,720 (-)Ensembl
RefSeq Acc Id: NM_001290308   ⟹   NP_001277237
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39979,506,269 - 79,626,004 (-)NCBI
GRCm38979,598,987 - 79,718,722 (-)NCBI
Celera976,744,484 - 76,862,867 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006510797   ⟹   XP_006510860
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39979,506,273 - 79,628,423 (-)NCBI
GRCm38979,598,991 - 79,721,141 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006510800   ⟹   XP_006510863
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39979,506,273 - 79,626,520 (-)NCBI
GRCm38979,598,991 - 79,719,059 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_006510860   ⟸   XM_006510797
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006510863   ⟸   XM_006510800
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001277237   ⟸   NM_001290308
- Peptide Label: precursor
- UniProtKB: Q60847 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000071662   ⟸   ENSMUST00000071750
RefSeq Acc Id: ENSMUSP00000123455   ⟸   ENSMUST00000135009
RefSeq Acc Id: ENSMUSP00000112604   ⟸   ENSMUST00000121227
Promoters
RGD ID:6844341
Promoter ID:MM_KWN:58180
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B4,   MEF_B6
Transcripts:OTTMUST00000050655
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36979,460,681 - 79,461,232 (-)MPROMDB
RGD ID:6844346
Promoter ID:MM_KWN:58181
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B6
Transcripts:UC009QUS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36979,487,681 - 79,488,182 (-)MPROMDB
RGD ID:6844345
Promoter ID:MM_KWN:58183
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000071750,   ENSMUST00000081475,   ENSMUST00000121227,   NM_007730,   OTTMUST00000050656,   OTTMUST00000050657,   OTTMUST00000050658
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36979,566,144 - 79,566,644 (-)MPROMDB
RGD ID:8670288
Promoter ID:EPDNEW_M13174
Type:initiation region
Name:Col12a1_1
Description:Mus musculus collagen, type XII, alpha 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38979,718,641 - 79,718,701EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88448 AgrOrtholog
Ensembl Genes ENSMUSG00000032332 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000071662 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000112604 UniProtKB/TrEMBL
  ENSMUSP00000123455 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000071750 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000121227 UniProtKB/TrEMBL
  ENSMUST00000135009 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.410 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Collagen UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin_G UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWF_A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12816 UniProtKB/Swiss-Prot
MGD MGI:88448 ENTREZGENE
NCBI Gene 12816 ENTREZGENE
Pfam Collagen UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  fn3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Col12a1 PhenoGen
PROSITE FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWFA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TSPN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VWA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF53300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt COCA1_MOUSE UniProtKB/Swiss-Prot
  E9PX70_MOUSE UniProtKB/TrEMBL
  F6WIM8_MOUSE UniProtKB/TrEMBL
  Q3TNZ7_MOUSE UniProtKB/TrEMBL
  Q60847 ENTREZGENE
UniProt Secondary P70322 UniProtKB/Swiss-Prot