Atp1b3-ps2 (ATPase Na+/K+ transporting subunit beta 3, pseudogene 2) - Rat Genome Database

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Gene: Atp1b3-ps2 (ATPase Na+/K+ transporting subunit beta 3, pseudogene 2) Rattus norvegicus
Analyze
Symbol: Atp1b3-ps2
Name: ATPase Na+/K+ transporting subunit beta 3, pseudogene 2
RGD ID: 2324078
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC100362780; sodium/potassium-transporting ATPase subunit beta-3-like
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81139,983,707 - 39,984,813 (+)NCBIGRCr8
mRatBN7.21126,497,436 - 26,498,542 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01126,913,795 - 26,915,004 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01130,539,163 - 30,540,269 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41127,016,314 - 27,017,324 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1126,251,410 - 26,252,619 (+)NCBICelera
Cytogenetic Map11q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Atp1b3-ps2
3 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)111945620576331918Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat

Markers in Region
AW212096  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21126,498,758 - 26,498,840 (+)MAPPERmRatBN7.2
Rnor_6.01126,915,221 - 26,915,302NCBIRnor6.0
Rnor_5.01130,540,486 - 30,540,567UniSTSRnor5.0
RGSC_v3.41127,017,541 - 27,017,622UniSTSRGSC3.4
Celera1126,252,836 - 26,252,917UniSTS


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XR_146214
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.01130,539,259 - 30,540,269 (+)NCBI
RefSeq Acc Id: XR_146537
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1126,251,609 - 26,252,619 (+)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-22059 BioCyc
NCBI Gene 100362780 ENTREZGENE
PhenoGen Atp1b3-ps2 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Atp1b3-ps2  ATPase Na+/K+ transporting subunit beta 3, pseudogene 2  LOC100362780  sodium/potassium-transporting ATPase subunit beta-3-like  Symbol and Name Changed 1299863 APPROVED
2010-05-06 LOC100362780  sodium/potassium-transporting ATPase subunit beta-3-like      Symbol and Name status set to provisional 70820 PROVISIONAL