LOC100363236 (keratin associated protein 13-like) - Rat Genome Database

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Gene: LOC100363236 (keratin associated protein 13-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC100363236
Name: keratin associated protein 13-like
RGD ID: 2323404
Description: Predicted to be located in cytosol and keratin filament.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: keratin-associated protein 13-2-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81141,554,749 - 41,555,520 (-)NCBIGRCr8
mRatBN7.21128,068,529 - 28,069,300 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1128,068,788 - 28,069,300 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01128,717,681 - 28,718,300 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01132,337,610 - 32,338,413 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41128,591,435 - 28,592,206 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1127,784,162 - 27,784,781 (-)NCBICelera
Cytogenetic Map11q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in LOC100363236
7 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)111945620576331918Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000061620   ⟹   ENSRNOP00000058337
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1128,068,788 - 28,069,300 (-)Ensembl
RefSeq Acc Id: XM_003751020   ⟹   XP_003751068
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81141,554,749 - 41,555,520 (-)NCBI
mRatBN7.21128,068,529 - 28,069,300 (-)NCBI
Rnor_6.01128,717,681 - 28,718,300 (-)NCBI
Rnor_5.01132,337,610 - 32,338,413 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003751068 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000058337.3
RefSeq Acc Id: XP_003751068   ⟸   XM_003751020
- UniProtKB: D3ZK59 (UniProtKB/TrEMBL),   A6JL97 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000058337   ⟸   ENSRNOT00000061620

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-22017 BioCyc
Ensembl Genes ENSRNOG00000065419 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000061620.4 UniProtKB/TrEMBL
InterPro KRTAP_PMG UniProtKB/TrEMBL
KEGG Report rno:100363236 UniProtKB/TrEMBL
NCBI Gene 100363236 ENTREZGENE
Pfam PMG UniProtKB/TrEMBL
PhenoGen LOC100363236 PhenoGen
RatGTEx ENSRNOG00000065419 RatGTEx
UniProt A6JL97 ENTREZGENE, UniProtKB/TrEMBL
  D3ZK59 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-05-06 LOC100363236  keratin associated protein 13-like      Symbol and Name status set to provisional 70820 PROVISIONAL