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Gene: Ecm2 (extracellular matrix protein 2) Rattus norvegicus

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Symbol:

Ecm2

Name:

extracellular matrix protein 2

RGD ID:

2320282

Description:

Predicted to enable collagen V binding activity and heparin binding activity. Predicted to be involved in extracellular matrix organization and positive regulation of cell-substrate adhesion. Predicted to be located in interstitial matrix. Predicted to be active in extracellular matrix. Orthologous to human ECM2 (extracellular matrix protein 2); INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

extracellular matrix protein 2, female organ and adipocyte specific; extracellular matrix protein 2-like; LOC100361383; LOC100910978

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	15,326,359 - 15,358,938 (-)	NCBI		GRCr8
mRatBN7.2	17	15,120,194 - 15,152,536 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	15,120,196 - 15,152,516 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	17	15,533,760 - 15,566,403 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	15,533,972 - 15,566,332 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	17,592,210 - 17,624,836 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	21,075,854 - 21,107,455 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	17	14,850,715 - 14,883,355 (-)	NCBI		Celera
Cytogenetic Map	17	p14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ecm2	Rat	hereditary sensory and autonomic neuropathy type 1		ISO	RGD:1318155	8554872	ClinVar Annotator: match by term: Hereditary sensory and autonomic neuropathy type 1	ClinVar	PMID:28492532
Ecm2	Rat	hereditary sensory neuropathy		ISO	RGD:1318155	8554872	ClinVar Annotator: match by term: Neuropathy hereditary sensory radicular, autosomal dominant	ClinVar	PMID:28492532
Ecm2	Rat	spinal muscular atrophy with lower extremity predominant 2A		ISO	RGD:1318155	8554872	ClinVar Annotator: match by term: Spinal muscular atrophy, lower extremity-predominant, 2A, autosomal dominant	ClinVar	PMID:28492532

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ecm2	Rat	Spontaneous Abortions		ISO	RGD:1318155	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:18539642

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ecm2	Rat	1-naphthyl isothiocyanate	decreases expression	EXP		6480464	1-Naphthylisothiocyanate results in decreased expression of ECM2 mRNA	CTD	PMID:30723492
Ecm2	Rat	17alpha-ethynylestradiol	decreases expression	EXP		6480464	Ethinyl Estradiol results in decreased expression of ECM2 mRNA	CTD	PMID:17557909
Ecm2	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	ISO	RGD:1552953	6480464	Tetrachlorodibenzodioxin results in decreased expression of ECM2 mRNA	CTD	PMID:33956508
Ecm2	Rat	2-hydroxypropanoic acid	increases expression	ISO	RGD:1318155	6480464	Lactic Acid results in increased expression of ECM2 mRNA	CTD	PMID:30851411
Ecm2	Rat	3-isobutyl-1-methyl-7H-xanthine	multiple interactions	ISO	RGD:1318155	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] more ...	CTD	PMID:28628672
Ecm2	Rat	4,4'-sulfonyldiphenol	increases expression	ISO	RGD:1318155	6480464	bisphenol S results in increased expression of ECM2 mRNA	CTD	PMID:30616060
Ecm2	Rat	aflatoxin B1	affects expression	ISO	RGD:1318155	6480464	Aflatoxin B1 affects the expression of ECM2 protein	CTD	PMID:20106945
Ecm2	Rat	aflatoxin B1	increases methylation	ISO	RGD:1318155	6480464	Aflatoxin B1 results in increased methylation of ECM2 gene	CTD	PMID:27153756
Ecm2	Rat	aflatoxin B1	decreases expression	ISO	RGD:1318155	6480464	Aflatoxin B1 results in decreased expression of ECM2 mRNA	CTD	PMID:22100608\|PMID:27153756
Ecm2	Rat	antirheumatic drug	increases expression	ISO	RGD:1318155	6480464	Antirheumatic Agents results in increased expression of ECM2 mRNA	CTD	PMID:24449571
Ecm2	Rat	avobenzone	decreases expression	ISO	RGD:1318155	6480464	avobenzone results in decreased expression of ECM2 mRNA	CTD	PMID:31016361
Ecm2	Rat	benzo[a]pyrene	increases expression	ISO	RGD:1552953	6480464	Benzo(a)pyrene results in increased expression of ECM2 mRNA	CTD	PMID:22228805
Ecm2	Rat	benzo[a]pyrene	decreases expression	ISO	RGD:1318155	6480464	Benzo(a)pyrene results in decreased expression of ECM2 mRNA	CTD	PMID:32234424
Ecm2	Rat	bis(2-ethylhexyl) phthalate	decreases expression	ISO	RGD:1318155	6480464	Diethylhexyl Phthalate results in decreased expression of ECM2 mRNA	CTD	PMID:31163220
Ecm2	Rat	bis(2-ethylhexyl) phthalate	decreases expression	ISO	RGD:1552953	6480464	Diethylhexyl Phthalate results in decreased expression of ECM2 mRNA	CTD	PMID:34319233
Ecm2	Rat	bisphenol A	multiple interactions	ISO	RGD:1318155	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] more ...	CTD	PMID:28628672
Ecm2	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of ECM2 mRNA	CTD	PMID:38750585
Ecm2	Rat	bisphenol A	increases expression	ISO	RGD:1552953	6480464	bisphenol A results in increased expression of ECM2 mRNA	CTD	PMID:30951980
Ecm2	Rat	bisphenol F	increases expression	ISO	RGD:1552953	6480464	bisphenol F results in increased expression of ECM2 mRNA	CTD	PMID:30951980
Ecm2	Rat	bromobenzene	increases expression	EXP		6480464	bromobenzene results in increased expression of ECM2 mRNA	CTD	PMID:32479839
Ecm2	Rat	cadmium dichloride	decreases expression	ISO	RGD:1318155	6480464	Cadmium Chloride results in decreased expression of ECM2 mRNA	CTD	PMID:38568856
Ecm2	Rat	carbon nanotube	decreases expression	ISO	RGD:1552953	6480464	Nanotubes, Carbon analog results in decreased expression of ECM2 mRNA; Nanotubes, Carbon results in decreased more ...	CTD	PMID:25554681
Ecm2	Rat	carmustine	increases expression	ISO	RGD:1318155	6480464	Carmustine results in increased expression of ECM2 mRNA	CTD	PMID:15980968
Ecm2	Rat	copper atom	multiple interactions	ISO	RGD:1318155	6480464	[NSC 689534 binds to Copper] which results in increased expression of ECM2 mRNA	CTD	PMID:20971185
Ecm2	Rat	copper(0)	multiple interactions	ISO	RGD:1318155	6480464	[NSC 689534 binds to Copper] which results in increased expression of ECM2 mRNA	CTD	PMID:20971185
Ecm2	Rat	crocidolite asbestos	decreases expression	ISO	RGD:1552953	6480464	Asbestos, Crocidolite results in decreased expression of ECM2 mRNA	CTD	PMID:29279043
Ecm2	Rat	cyclosporin A	increases expression	ISO	RGD:1318155	6480464	Cyclosporine results in increased expression of ECM2 mRNA	CTD	PMID:22147139\|PMID:27989131
Ecm2	Rat	cyclosporin A	decreases expression	ISO	RGD:1318155	6480464	Cyclosporine results in decreased expression of ECM2 mRNA	CTD	PMID:20106945
Ecm2	Rat	dexamethasone	multiple interactions	ISO	RGD:1318155	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] more ...	CTD	PMID:28628672
Ecm2	Rat	dioxygen	multiple interactions	ISO	RGD:1552953	6480464	[NFE2L2 protein affects the susceptibility to Oxygen] which affects the expression of ECM2 mRNA	CTD	PMID:30529165
Ecm2	Rat	dioxygen	multiple interactions	EXP		6480464	[Oxygen deficiency co-treated with Blood Glucose deficiency co-treated with Particulate Matter] results in decreased expression more ...	CTD	PMID:33729688
Ecm2	Rat	diquat	decreases expression	ISO	RGD:1552953	6480464	Diquat results in decreased expression of ECM2 mRNA	CTD	PMID:36851058
Ecm2	Rat	diuron	increases expression	EXP		6480464	Diuron results in increased expression of ECM2 mRNA	CTD	PMID:21551480
Ecm2	Rat	dopamine	decreases expression	EXP		6480464	Dopamine results in decreased expression of ECM2 mRNA	CTD	PMID:21983523
Ecm2	Rat	doxorubicin	decreases expression	ISO	RGD:1318155	6480464	Doxorubicin results in decreased expression of ECM2 mRNA	CTD	PMID:29803840
Ecm2	Rat	elemental selenium	decreases expression	ISO	RGD:1318155	6480464	Selenium results in decreased expression of ECM2 mRNA	CTD	PMID:19244175
Ecm2	Rat	entinostat	decreases expression	ISO	RGD:1318155	6480464	entinostat results in decreased expression of ECM2 mRNA	CTD	PMID:27188386
Ecm2	Rat	fenoldopam	decreases expression	EXP		6480464	Fenoldopam results in decreased expression of ECM2 mRNA	CTD	PMID:21983523
Ecm2	Rat	formaldehyde	increases expression	ISO	RGD:1318155	6480464	Formaldehyde results in increased expression of ECM2 mRNA	CTD	PMID:23649840\|PMID:27664576
Ecm2	Rat	hydroquinone	increases expression	ISO	RGD:1318155	6480464	hydroquinone results in increased expression of ECM2 mRNA	CTD	PMID:31256213
Ecm2	Rat	indometacin	multiple interactions	ISO	RGD:1318155	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] more ...	CTD	PMID:28628672
Ecm2	Rat	maneb	multiple interactions	ISO	RGD:1552953	6480464	[Maneb co-treated with Paraquat] results in decreased expression of ECM2 mRNA	CTD	PMID:36117858
Ecm2	Rat	methylseleninic acid	increases expression	ISO	RGD:1318155	6480464	methylselenic acid results in increased expression of ECM2 mRNA	CTD	PMID:18548127
Ecm2	Rat	nickel atom	decreases expression	ISO	RGD:1318155	6480464	Nickel results in decreased expression of ECM2 mRNA	CTD	PMID:25583101
Ecm2	Rat	O-methyleugenol	decreases expression	ISO	RGD:1318155	6480464	methyleugenol results in decreased expression of ECM2 mRNA	CTD	PMID:32234424
Ecm2	Rat	okadaic acid	decreases expression	ISO	RGD:1318155	6480464	Okadaic Acid results in decreased expression of ECM2 mRNA	CTD	PMID:38832940
Ecm2	Rat	ozone	multiple interactions	ISO	RGD:1552953	6480464	[Air Pollutants results in increased abundance of [Ozone co-treated with Soot]] which results in decreased more ...	CTD	PMID:25658374\|PMID:27106289\|PMID:34911549
Ecm2	Rat	ozone	decreases expression	ISO	RGD:1552953	6480464	Ozone results in decreased expression of ECM2 mRNA	CTD	PMID:33026818
Ecm2	Rat	paracetamol	decreases expression	ISO	RGD:1318155	6480464	Acetaminophen results in decreased expression of ECM2 mRNA	CTD	PMID:29067470
Ecm2	Rat	paraquat	decreases expression	EXP		6480464	Paraquat results in decreased expression of ECM2 mRNA	CTD	PMID:32680482
Ecm2	Rat	paraquat	multiple interactions	ISO	RGD:1552953	6480464	[Maneb co-treated with Paraquat] results in decreased expression of ECM2 mRNA	CTD	PMID:36117858
Ecm2	Rat	pirinixic acid	decreases expression	ISO	RGD:1552953	6480464	pirinixic acid results in decreased expression of ECM2 mRNA	CTD	PMID:20813756
Ecm2	Rat	rac-lactic acid	increases expression	ISO	RGD:1318155	6480464	Lactic Acid results in increased expression of ECM2 mRNA	CTD	PMID:30851411
Ecm2	Rat	rotenone	decreases expression	ISO	RGD:1318155	6480464	Rotenone results in decreased expression of ECM2 mRNA	CTD	PMID:29955902
Ecm2	Rat	selenium atom	decreases expression	ISO	RGD:1318155	6480464	Selenium results in decreased expression of ECM2 mRNA	CTD	PMID:19244175
Ecm2	Rat	silicon dioxide	increases expression	ISO	RGD:1318155	6480464	Silicon Dioxide analog results in increased expression of ECM2 mRNA	CTD	PMID:25895662
Ecm2	Rat	sodium arsenite	decreases expression	ISO	RGD:1318155	6480464	sodium arsenite results in decreased expression of ECM2 mRNA	CTD	PMID:29301061\|PMID:34032870
Ecm2	Rat	sodium arsenite	increases expression	ISO	RGD:1318155	6480464	sodium arsenite results in increased expression of ECM2 mRNA	CTD	PMID:38568856
Ecm2	Rat	T-2 toxin	decreases expression	ISO	RGD:1318155	6480464	T-2 Toxin results in decreased expression of ECM2 mRNA	CTD	PMID:31863870
Ecm2	Rat	titanium dioxide	decreases expression	ISO	RGD:1552953	6480464	titanium dioxide results in decreased expression of ECM2 mRNA	CTD	PMID:29264374
Ecm2	Rat	trichloroethene	decreases expression	EXP		6480464	Trichloroethylene results in decreased expression of ECM2 mRNA	CTD	PMID:33387578
Ecm2	Rat	trimellitic anhydride	decreases expression	ISO	RGD:1552953	6480464	trimellitic anhydride results in decreased expression of ECM2 mRNA	CTD	PMID:19042947
Ecm2	Rat	triptonide	increases expression	ISO	RGD:1552953	6480464	triptonide results in increased expression of ECM2 mRNA	CTD	PMID:33045310
Ecm2	Rat	valproic acid	decreases expression	ISO	RGD:1318155	6480464	Valproic Acid results in decreased expression of ECM2 mRNA	CTD	PMID:29154799

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ecm2	Rat	extracellular matrix organization	involved_in	IBA	MGI:3039578\|PANTHER:PTN002519889	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Ecm2	Rat	extracellular matrix organization	acts_upstream_of_or_within	IEA	UniProtKB:Q5FW85\|ensembl:ENSMUSP00000060402	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Ecm2	Rat	extracellular matrix organization	acts_upstream_of_or_within	ISO	RGD:1552953	1624291	PMID:18757743	RGD	PMID:18757743
Ecm2	Rat	positive regulation of cell-substrate adhesion	involved_in	IBA	MGI:3039578\|PANTHER:PTN002519889	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Ecm2	Rat	positive regulation of cell-substrate adhesion	acts_upstream_of_or_within	IEA	UniProtKB:Q5FW85\|ensembl:ENSMUSP00000060402	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Ecm2	Rat	positive regulation of cell-substrate adhesion	acts_upstream_of_or_within	ISO	RGD:1552953	1624291	PMID:18757743	RGD	PMID:18757743

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ecm2	Rat	extracellular matrix	located_in	IEA	UniProtKB:Q5FW85\|ensembl:ENSMUSP00000060402	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Ecm2	Rat	extracellular matrix	is_active_in	IBA	MGI:3039578\|PANTHER:PTN002519889	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Ecm2	Rat	extracellular matrix	located_in	ISO	RGD:1552953	1624291	PMID:18757743	RGD	PMID:18757743
Ecm2	Rat	interstitial matrix	located_in	ISO	RGD:1552953	1624291	PMID:18757743	RGD	PMID:18757743
Ecm2	Rat	interstitial matrix	located_in	IEA	UniProtKB:Q5FW85\|ensembl:ENSMUSP00000060402	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ecm2	Rat	collagen binding	enables	IEA	UniProtKB:Q5FW85\|ensembl:ENSMUSP00000060402	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Ecm2	Rat	collagen binding	enables	ISO	RGD:1552953	1624291	PMID:18757743	RGD	PMID:18757743
Ecm2	Rat	collagen V binding	enables	IBA	MGI:3039578\|PANTHER:PTN002519889	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Ecm2	Rat	collagen V binding	enables	IEA	UniProtKB:Q5FW85\|ensembl:ENSMUSP00000060402	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Ecm2	Rat	collagen V binding	enables	ISO	RGD:1552953	1624291	PMID:18757743	RGD	PMID:18757743
Ecm2	Rat	heparin binding	enables	IBA	MGI:3039578\|PANTHER:PTN002519889	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Ecm2	Rat	heparin binding	enables	IEA	UniProtKB:Q5FW85\|ensembl:ENSMUSP00000060402	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Ecm2	Rat	heparin binding	enables	ISO	RGD:1552953	1624291	PMID:18757743	RGD	PMID:18757743
Ecm2	Rat	protein binding	enables	ISO	RGD:1552953	1624291	UniProtKB:Q6PDM1\|UniProtKB:Q99MK9 PMID:17335777	RGD	PMID:17335777

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:18757743

Ecm2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	15,326,359 - 15,358,938 (-)	NCBI		GRCr8
mRatBN7.2	17	15,120,194 - 15,152,536 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	15,120,196 - 15,152,516 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	17	15,533,760 - 15,566,403 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	15,533,972 - 15,566,332 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	17,592,210 - 17,624,836 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	21,075,854 - 21,107,455 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	17	14,850,715 - 14,883,355 (-)	NCBI		Celera
Cytogenetic Map	17	p14	NCBI

ECM2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	92,493,547 - 92,559,106 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	92,493,554 - 92,536,655 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	95,255,829 - 95,298,272 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	94,297,420 - 94,338,073 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	92,337,153 - 92,377,807	NCBI
Celera	9	65,699,616 - 65,740,268 (-)	NCBI		Celera
Cytogenetic Map	9	q22.31	NCBI
HuRef	9	64,933,268 - 64,976,692 (-)	NCBI		HuRef
CHM1_1	9	95,402,248 - 95,444,814 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	104,660,046 - 104,703,254 (-)	NCBI		T2T-CHM13v2.0

Ecm2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	49,658,259 - 49,686,267 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	49,658,286 - 49,686,265 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	49,504,810 - 49,532,789 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	49,504,810 - 49,532,789 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	49,600,179 - 49,628,158 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	49,516,747 - 49,544,726 (+)	NCBI		MGSCv36	mm8
Celera	13	50,595,283 - 50,623,262 (+)	NCBI		Celera
Cytogenetic Map	13	A5	NCBI
cM Map	13	25.29	NCBI

Ecm2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955515	5,283,725 - 5,307,749 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955515	5,273,277 - 5,308,709 (+)	NCBI	ChiLan1.0	ChiLan1.0

ECM2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	46,891,955 - 46,934,692 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	46,894,863 - 46,937,033 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	63,617,088 - 63,659,055 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	91,689,304 - 91,731,291 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	91,691,721 - 91,718,230 (-)	Ensembl	panpan1.1		panPan2

ECM2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	98,832,107 - 98,865,084 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	98,832,677 - 98,864,700 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	99,225,966 - 99,258,611 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	99,448,946 - 99,481,590 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	99,448,993 - 99,481,691 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	99,062,018 - 99,094,661 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	98,797,495 - 98,830,420 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	99,553,430 - 99,587,072 (+)	NCBI		UU_Cfam_GSD_1.0

Ecm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404944	7,901,376 - 7,933,934 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	2,116,604 - 2,150,398 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	2,117,226 - 2,150,382 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ECM2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	42,203,171 - 42,243,547 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	42,205,246 - 42,243,746 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	43,457,616 - 43,480,360 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ECM2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	103,010,232 - 103,053,472 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	103,011,749 - 103,053,678 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	91,282,537 - 91,325,754 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ecm2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624868	3,840,109 - 3,888,356 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624868	3,840,598 - 3,886,074 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Ecm2
110 total Variants

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354581	Bp247	Blood pressure QTL 247	4.5		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	17	1	69599340	Rat
2300002	Iddm36	Insulin dependent diabetes mellitus QTL 36	1.98		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	17	9991286	40540197	Rat
631499	Stl1	Serum triglyceride level QTL 1	3.6		blood triglyceride amount (VT:0002644)	blood triglyceride level (CMO:0000118)	17	3271398	27389946	Rat
2293664	Bmd28	Bone mineral density QTL 28	5.1	0.0001	femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	17	4354487	27028127	Rat
1300123	Bp194	Blood pressure QTL 194	2.82		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	2115149	34551001	Rat
1582224	Epfw4	Epididymal fat weight QTL 4	3.5	0.0058	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	17	9201365	23653323	Rat
1582225	Bw67	Body weight QTL 67	6.2	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	17	9201365	23653323	Rat
1582226	Bw64	Body weight QTL 64	4.2	0.0017	body mass (VT:0001259)	body weight (CMO:0000012)	17	9201365	23653323	Rat
1354651	Lmblg2	Limb length QTL 2	6		tibia length (VT:0004357)	tibia length (CMO:0000450)	17	4299130	69599340	Rat
10401807	Kidm52	Kidney mass QTL 52			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	17	1	31701463	Rat
10054088	Scort28	Serum corticosterone level QTL 28	2.04	0.0102	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	4528038	49528038	Rat
1354630	Cm34	Cardiac mass QTL 34	8.7		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	17	4299130	69599340	Rat
1582208	Kidm32	Kidney mass QTL 32	3.9	0.0018	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	17	9201365	23653323	Rat
1354638	Insul1	Insulin level QTL 1	4.8		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	4299130	69599340	Rat
1549900	Iddm20	Insulin dependent diabetes mellitus QTL 20	3.7		pancreas integrity trait (VT:0010560)	percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)	17	13986773	21975515	Rat
1354613	Kidm14	Kidney mass QTL 14	6.2		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	17	4299130	35837242	Rat
2324619	Coatc4	Coat color QTL 4		0.001	coat/hair pigmentation trait (VT:0010463)	pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)	17	4299130	21293263	Rat
2303627	Vencon8	Ventilatory control QTL 8		0.001	respiration trait (VT:0001943)	tidal volume (CMO:0000222)	17	4528038	49528038	Rat
70184	BpQTLcluster14	Blood pressure QTL cluster 14	3.38		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	1	31990913	Rat
1581553	Pur14	Proteinuria QTL 14	5.3	0.0001	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	17	7979968	16317111	Rat
2303561	Bw91	Body weight QTL 91	2		body mass (VT:0001259)	body weight (CMO:0000012)	17	8868462	53868462	Rat
1582258	Bw76	Body weight QTL 76	4.6	0.0005	body mass (VT:0001259)	body weight (CMO:0000012)	17	9201365	23653323	Rat
631207	Niddm41	Non-insulin dependent diabetes mellitus QTL 41			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	17	1	37830672	Rat
1582199	Insul5	Insulin level QTL 5	3.4	0.0119	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	17	9201365	23653323	Rat
1354596	Bw32	Body weight QTL 32	4.5		body mass (VT:0001259)	body weight (CMO:0000012)	17	4299130	60781592	Rat
1354662	Rf49	Renal function QTL 49	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	17	1	69599340	Rat
2293648	Bmd31	Bone mineral density QTL 31	4.5	0.0001	femur size trait (VT:1000369)	femoral neck cortical cross-sectional area (CMO:0001702)	17	4354487	27028127	Rat
1354658	Spl8	Serum phospholipid level QTL 8	3.8		blood VLDL phospholipid amount (VT:0010507)	blood very low density lipoprotein phospholipid level (CMO:0001571)	17	1	60781592	Rat
1641902	Colcr7	Colorectal carcinoma resistance QTL 7	3.35	0.0044	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	17	2115149	21881669	Rat
1582241	Bw70	Body weight QTL 70	4.6	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	17	9201365	23653323	Rat
1582245	Bw73	Body weight QTL 73	4.6	0.0004	body mass (VT:0001259)	body weight (CMO:0000012)	17	9201365	23653323	Rat
9590316	Scort21	Serum corticosterone level QTL 21	4.75	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	1	22871563	Rat

BF405276

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	15,144,206 - 15,144,380 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	15,558,044 - 15,558,217	NCBI	Rnor6.0
Rnor_5.0	17	17,616,494 - 17,616,667	UniSTS	Rnor5.0
RGSC_v3.4	17	21,099,167 - 21,099,340	UniSTS	RGSC3.4
Celera	17	14,874,994 - 14,875,167	UniSTS
RH 3.4 Map	17	174.9	UniSTS
Cytogenetic Map	17	p14	UniSTS

RH141814

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	15,121,081 - 15,122,214 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	15,534,917 - 15,536,049	NCBI	Rnor6.0
Rnor_6.0	17	14,696,450 - 14,697,582	NCBI	Rnor6.0
Rnor_5.0	17	17,593,367 - 17,594,499	UniSTS	Rnor5.0
Rnor_5.0	17	16,748,774 - 16,749,906	UniSTS	Rnor5.0
RGSC_v3.4	17	21,076,040 - 21,077,172	UniSTS	RGSC3.4
Celera	17	14,851,872 - 14,853,004	UniSTS
RH 3.4 Map	17	174.2	UniSTS
Cytogenetic Map	17	p14	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	41	111	77	76	45	25	45	6	193	89	91	42	55	31


RefSeq Transcripts	NM_001427107	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222357	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253742	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096237	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC111847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215770	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000043852 ⟹ ENSRNOP00000051031

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	17	15,533,972 - 15,555,919 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000071131 ⟹ ENSRNOP00000063949

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	17	14,696,308 - 14,717,420 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093743 ⟹ ENSRNOP00000076346

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	15,120,196 - 15,152,516 (-)	Ensembl
Rnor_6.0 Ensembl	17	15,534,025 - 15,566,332 (-)	Ensembl

RefSeq Acc Id:

NM_001427107 ⟹ NP_001414036

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	15,326,359 - 15,358,855 (-)	NCBI

RefSeq Acc Id:

XM_006253742 ⟹ XP_006253804

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	15,327,324 - 15,358,938 (-)	NCBI
mRatBN7.2	17	15,120,194 - 15,152,536 (-)	NCBI
Rnor_6.0	17	15,533,760 - 15,566,403 (-)	NCBI
Rnor_5.0	17	17,592,210 - 17,624,836 (-)	NCBI

Sequence:

show sequence

CCCCACCCCGCCCAACTCCCGCTGATGTTTTCCACTTTTTCTGTGATTAAAAAAAATTTCCCTTGGTAACCATTTTCCCTGGTTACTTCTTTGGCTGATTTTCCACACAAAGAACTGAAAGGCGTTTA
TCCCAAGGGAATCAGTTCTTTTAGATTTTACTAAGAAGTCAGCTAACACTTTCAACATTCCCTTCTCTTCTTTGTTTTTAAAGAAAGTTCTGGTTTTGTTTCACTTTCAGCGGGAGACTTAAATGACA
CCAAGCAAAGCTACTTAGTTTAGATTTCCAGAACTTTGTTGGTGAAAAAAAAAAAAAAATCGAACATGAAGCAAGCGGTTTGGTTCTGTCTCCTTCTGCTTATTCTGCTTACTGTCTTTCAAACCGAC
TGTGAACCAAGTCCCAGAAGGCAAAGGAGGAGGATGCACCAAAGACTCAGGAAAAGCTCTTCACTCTACCCCAGAGCCGACAGGTGGCTTGAAGTTCAGCAAACCACTGCTGCACCAGATGCTGGGCT
ACCCACTGCCCACTCTGATTACAGTGTGGAGGAAAACATACAGTCACTTCTAGGCAATCTTGGAGTAGAATCAAGTTACGGTGTGCTACCAGAACAACAAGAATCCATTAACCAAGGAAGAAGGAAGG
AAGAGGACAGTGAGGAGGAGACTGAGAGAGAAGGAGAGGAAGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAAGAAGATGGTGTAAGAGGAGATGTGTTCAGAATGTCTTCCCGGTTA
ATACCTGGAATCCCAAGAGGCAGGCCACGCCTGCCCAGAAGCTGTTCTCTGTCCTACAGGACTATCAGTTGCATTTATGGAGACTTCACTGAGATCCCACCCATAACAGCACCAGAAGTAACGACCCT
GGAGCTGGTTGGGAATTCAATCATCTCCATTCCAAATGAAGCATTTAATGGATTACCAAATTTGGAAAGACTTGATCTGAGCAGAAATAATATCACTTCTTCAGGCATAGGTCCAAAAGCATTCAAGC
TTTTGAAGAAGTTAATGCATCTGAACATGGACGGAAATAATTTGGTACATATTCCTTCTGAATTACCATCTACACTAGAAGAACTTAAAATAAACGACAACAATCTCCAGGCTATCGATGAGAAAAGC
TTATCAGACTTAAATCAACTTGTCGCTTTAGAATTGGAGGGAAACAATCTCAGTGAAATCAATGTCAACCCTCTAGCTTTCAAATCCTTGAAGAACTTATCATACCTACGTCTGGGAAAAAACAAATT
CAGAATCATACCACAAGGTCTTCCAGCTTCTATTGAGGAGTTGTACCTAGAAAATAATCAAATTGAAGAAATAACTGAAATTTGTTTCAATCACACCAGAAAGATAACTATGATTGTACTACGTTATA
ATAAAATAGAAGAAAGTCGGATTGCTCCTTTAGCATGGATAAATCACGAAAATCTTGAATCTATCGACCTGTCCTACAACAAGCTCTACCACGTCCCCTCCTATCTACCCAAATCTCTTTTGCACCTT
GTCCTAATTGGGAACCAAATTGAACGGATCCCTGGCTATGTGTTTGGCCACATGAAACCAGGCCTGGAGTACTTGTACCTGTCATTTAACAGACTTTCTGATGATGGTGTGGACCTAGTCTCGTTCTA
TGGAGCATATCATTCTCTGAGAGAACTATTTCTGGATCACAATGACTTCAAATCCATACCCCCTGGAATACAAGGAATGAAAGCATTGCATTTTCTGAGGCTGAACAACAATAAGATACGGAACATCC
TTCCTGAACAAATCTGCAATGCTGAGGAAGATGAGGACTCAGCTCTTGAACACCTTCATCTTGAAAACAATTACATCACAACTAGAGCTATGTCGCCCTATGCGTTTTCATGCATAAGACTGTACTCA
AGTGTTGTTCTTAAACCACAACGCATCAAGTAACTTCAAGTTTCTCTTTGCCATTTATAAATTTTACCCAAGCATAACAAGCATTACATCTCTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTTTGTACACGAGTGCAATGTCCTCAGGAACTAGAAGAGGCTGTTGGACGCCCTGAAGCTGGAGTTCAGGTGGATCTGTGCTGTGAATTGAACTTGGGTACACTCTAAGAGCAGTACACGTTCTCG
ATGGATTGATCCATGCCTCAAGTCCCCAAAATACCATTCTCATGCTAATTTCGTGGTTTAGATCATTTTACAATGGTTAACTATGCATATTGGTAATGGTAAGGAAAGCTAGCAGAAGGGCATACAAA
AATTCTACACTGTAAGCCTAGAATTAGTTCTTAAAATAAAAAAAAAATTTTCAAGATTGCTTTCATTCTTCAGCAAGATCAAAAGATTACAAAAAGTAAACTGGGCATGGTGGCACATGCCTTTGATC
CCAACATTTGGGAAACAGAGACCAGAGGATCTCTCTGAGTTTGAGGCCAGCCTGGTTTATATAGTGAGTTTCAGGACAGCATGGACTATGTAAAGACCTTGTCATACAAAAAGACTACAAGAAGCAAA
TACTCTTCTAAATATACAAATTACTGTTAACTACAAGCTGATGTAAATGTAAATACAACTTATTCCTCCACTAGTTAGAGAGTTAGCAACCATCTCCTTTGCTAGATTTCTAAAATAAACTTTTTGTC
AGTTTAATGAACAAAGTGGTATTCATTACACACTGACTTGTTGTAGTGATTTCTTTTATTAACGTAAAGCTGATCAATCTATCATGGTCAATCTCTCTGTATTGATACAAAATTTTATATGATACATA
CAGAACCTCTGTGCTTTTCTTTTATTTACTTAAGTTTATGTTCTGAAGAAATACTAGTGTCTCGACTTAAGCTCCAGCTTTGGTCTCTGCTTTAGTTTCTTTTCCTGTTACTGTGATAAAAATACCTC
AATAAAAGCTAAATCAAAACATAA

hide sequence

RefSeq Acc Id:

XM_039096237 ⟹ XP_038952165

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	15,327,324 - 15,350,735 (-)	NCBI
mRatBN7.2	17	15,120,194 - 15,144,466 (-)	NCBI


Protein RefSeqs	NP_001414036	(Get FASTA)	NCBI Sequence Viewer
	XP_006253804	(Get FASTA)	NCBI Sequence Viewer
	XP_038952165	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000076346
	ENSRNOP00000076346.1

RefSeq Acc Id:	XP_006253804 ⟸ XM_006253742
- Peptide Label:	isoform X2
- UniProtKB:	A6J6W1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKQAVWFCLLLLILLTVFQTDCEPSPRRQRRRMHQRLRKSSSLYPRADRWLEVQQTTAAPDAGLPTAHSDYSVEENIQSLLGNLGVESSYGVLPEQQESINQGRRKEEDSEEETEREGEEEEEEEEEE EEEEEEEDGVRGDVFRMSSRLIPGIPRGRPRLPRSCSLSYRTISCIYGDFTEIPPITAPEVTTLELVGNSIISIPNEAFNGLPNLERLDLSRNNITSSGIGPKAFKLLKKLMHLNMDGNNLVHIPSEL PSTLEELKINDNNLQAIDEKSLSDLNQLVALELEGNNLSEINVNPLAFKSLKNLSYLRLGKNKFRIIPQGLPASIEELYLENNQIEEITEICFNHTRKITMIVLRYNKIEESRIAPLAWINHENLESI DLSYNKLYHVPSYLPKSLLHLVLIGNQIERIPGYVFGHMKPGLEYLYLSFNRLSDDGVDLVSFYGAYHSLRELFLDHNDFKSIPPGIQGMKALHFLRLNNNKIRNILPEQICNAEEDEDSALEHLHLE NNYITTRAMSPYAFSCIRLYSSVVLKPQRIK hide sequence

Ensembl Acc Id:

ENSRNOP00000051031 ⟸ ENSRNOT00000043852

Ensembl Acc Id:

ENSRNOP00000076346 ⟸ ENSRNOT00000093743

RefSeq Acc Id:	XP_038952165 ⟸ XM_039096237
- Peptide Label:	isoform X1
- UniProtKB:	D3ZS41 (UniProtKB/TrEMBL), A6J6W1 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000063949 ⟸ ENSRNOT00000071131

Protein Domains

VWFC

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-M0R3N1-F1-model_v2	AlphaFold	M0R3N1	1-675	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-9996	BioCyc
Ensembl Genes	ENSRNOG00000031716	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOG00000045684	Ensembl
Ensembl Transcript	ENSRNOT00000093743	ENTREZGENE
	ENSRNOT00000093743.2	UniProtKB/TrEMBL
Gene3D-CATH	3.80.10.10	UniProtKB/TrEMBL
	6.20.200.20	UniProtKB/TrEMBL
InterPro	ECM2	UniProtKB/TrEMBL
	L_dom-like	UniProtKB/TrEMBL
	Leu-rich_rpt	UniProtKB/TrEMBL
	Leu-rich_rpt_typical-subtyp	UniProtKB/TrEMBL
	VWF_C	UniProtKB/TrEMBL
NCBI Gene	100361383	ENTREZGENE
PANTHER	EXTRACELLULAR MATRIX PROTEIN 2	UniProtKB/TrEMBL
	PTHR46544	UniProtKB/TrEMBL
Pfam	LRR_8	UniProtKB/TrEMBL
	VWC	UniProtKB/TrEMBL
PhenoGen	Ecm2	PhenoGen
PROSITE	LRR	UniProtKB/TrEMBL
	VWFC_1	UniProtKB/TrEMBL
	VWFC_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000031716	RatGTEx
	ENSRNOG00000045684	RatGTEx
SMART	LRR_TYP	UniProtKB/TrEMBL
	VWC	UniProtKB/TrEMBL
Superfamily-SCOP	FnI-like domain	UniProtKB/TrEMBL
	L domain-like	UniProtKB/TrEMBL
UniProt	A6J6W1	ENTREZGENE, UniProtKB/TrEMBL
	D3ZS41	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Ecm2	extracellular matrix protein 2	LOC100910978	extracellular matrix protein 2-like	Data merged from RGD:6495594	737654	PROVISIONAL
2016-03-22	Ecm2	extracellular matrix protein 2	Ecm2	extracellular matrix protein 2, female organ and adipocyte specific	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2014-07-23	Ecm2	extracellular matrix protein 2, female organ and adipocyte specific	LOC100361383	extracellular matrix protein 2-like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-07-05	LOC100910978	extracellular matrix protein 2-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2010-05-05	LOC100361383	extracellular matrix protein 2-like			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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