 Gene-Chemical Interaction Annotations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Ontology Annotations |
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Analyze GeneStrainQTL List |
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Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
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MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Gene Ontology AnnotationsDisease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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Molecular Function
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References - curated| 1. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 2. | RGD automated import pipeline for gene-chemical interactions |
References - uncurated| PubMed | 18757743 |
Genomics
Comparative Map Data| Ecm2 (Rattus norvegicus - Norway rat) |
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| ECM2 (Homo sapiens - human) |
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| Ecm2 (Mus musculus - house mouse) |
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| Ecm2 (Chinchilla lanigera - long-tailed chinchilla) |
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| ECM2 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| ECM2 (Canis lupus familiaris - dog) |
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| Ecm2 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| ECM2 (Sus scrofa - pig) |
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Position Markers| BF405276 |
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| RH141814 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| testis | heart | brain | ovary | uterus | skeletal muscle tissue | colon | gastrocnemius | forebrain | hindbrain | lung | spleen | liver | kidney | adrenal gland | thymus | |
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| High | ||||||||||||||||
| Medium | ||||||||||||||||
| Low | 8 | 25 | 11 | 6 | 4 | 2 | 3 | 8 | 10 | 15 | 11 | 11 | 3 | 22 | 8 | 8 |
| Below cutoff | 9 | 10 | 10 | 9 | 1 | 16 | 10 | 24 | 11 |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | XM_006222357 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_006222358 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006253741 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006253742 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017587707 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017600705 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR07072539 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AAHX01090253 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AC111847 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ215770 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | XM_006222357 ⟹ XP_006222419 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
CCCACCCCGCCCAACTCCCGCTGATGTTTTCCACTTTTTCTGTGATTAAAAAAAATTTCCCTTGhide sequence |
| RefSeq Acc Id: | XM_006222358 ⟹ XP_006222420 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
CCCCACCCCGCCCAACTCCCGCTGATGTTTTCCACTTTTTCTGTGATTAAAAAAAATTTCCCTThide sequence |
| RefSeq Acc Id: | XM_006253741 ⟹ XP_006253803 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
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| Sequence: |
CCCACCCCGCCCAACTCCCGCTGATGTTTTCCACTTTTTCTGTGATTAAAAAAAATTTCCCTTGhide sequence |
| RefSeq Acc Id: | XM_006253742 ⟹ XP_006253804 | ||||||||||||||
| RefSeq Status: | |||||||||||||||
| Type: | CODING | ||||||||||||||
| Position: |
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| Sequence: |
CCCCACCCCGCCCAACTCCCGCTGATGTTTTCCACTTTTTCTGTGATTAAAAAAAATTTCCCTThide sequence |
| RefSeq Acc Id: | XM_017587707 ⟹ XP_017443196 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
GAGACAGCGTGGAACCATGAGGCCAGTTACTGCAGCAGGACAACAGTATGGTGGTTCATGGGAThide sequence |
| RefSeq Acc Id: | XM_017600705 ⟹ XP_017456194 | |||||||||
| RefSeq Status: | ||||||||||
| Type: | CODING | |||||||||
| Position: |
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| Sequence: |
CAGAGAACCTCCTGAGTGCTGGGATCAAAGGTGTGCGCCACCACTACCCAGCTGTATATTAACThide sequence |
Protein Sequences| Protein RefSeqs | XP_006222419 | (Get FASTA) | NCBI Sequence Viewer |
| XP_006222420 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006253803 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006253804 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017443196 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017456194 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | XP_006222420 ⟸ XM_006222358 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MKQAVWFCLLLLILLTVFQTDCEPSPRRQRRRMHQRLRKSSSLYPRADRWLEVQQTTAAPDAGLhide sequence |
| RefSeq Acc Id: | XP_006222419 ⟸ XM_006222357 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MKQAVWFCLLLLILLTVFQTDCEPSPRRQRRRMHQRLRKSSSLYPRADRWLEVQQTTAAPDAGLhide sequence |
| RefSeq Acc Id: | XP_006253804 ⟸ XM_006253742 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MKQAVWFCLLLLILLTVFQTDCEPSPRRQRRRMHQRLRKSSSLYPRADRWLEVQQTTAAPDAGLhide sequence |
| RefSeq Acc Id: | XP_006253803 ⟸ XM_006253741 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | D3ZS41 (UniProtKB/TrEMBL) |
| - Sequence: |
MKQAVWFCLLLLILLTVFQTDCEPSPRRQRRRMHQRLRKSSSLYPRADRWLEVQQTTAAPDAGLhide sequence |
| RefSeq Acc Id: | XP_017443196 ⟸ XM_017587707 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MKQAVWFCLLLLILLTVFQTDCEPSPRRQRRRMHQRLRKSSSLYPRADRWLEVQQTTAAPDAGLhide sequence |
| RefSeq Acc Id: | XP_017456194 ⟸ XM_017600705 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | D3ZS41 (UniProtKB/TrEMBL) |
| - Sequence: |
MKQAVWFCLLLLILLTVFQTDCEPSPRRQRRRMHQRLRKSSSLYPRADRWLEVQQTTAAPDAGLhide sequence |
TranscriptomeStrain Variation
Strain Sequence Variants (Rnor 6.0)
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Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:2320282 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000031716 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000051031 | ENTREZGENE, UniProtKB/TrEMBL |
| ENSRNOP00000076346 | ENTREZGENE, UniProtKB/TrEMBL | |
| Ensembl Transcript | ENSRNOT00000043852 | ENTREZGENE, UniProtKB/TrEMBL |
| ENSRNOT00000093743 | ENTREZGENE, UniProtKB/TrEMBL | |
| Gene3D-CATH | 3.80.10.10 | UniProtKB/TrEMBL |
| InterPro | L_dom-like | UniProtKB/TrEMBL |
| Leu-rich_rpt | UniProtKB/TrEMBL | |
| Leu-rich_rpt_typical-subtyp | UniProtKB/TrEMBL | |
| VWF_C | UniProtKB/TrEMBL | |
| NCBI Gene | 100361383 | ENTREZGENE |
| Pfam | LRR_8 | UniProtKB/TrEMBL |
| VWC | UniProtKB/TrEMBL | |
| PhenoGen | Ecm2 | PhenoGen |
| PROSITE | LRR | UniProtKB/TrEMBL |
| VWFC_1 | UniProtKB/TrEMBL | |
| VWFC_2 | UniProtKB/TrEMBL | |
| SMART | LRR_TYP | UniProtKB/TrEMBL |
| VWC | UniProtKB/TrEMBL | |
| UniGene | Rn.106785 | ENTREZGENE |
| UniProt | D3ZS41 | ENTREZGENE, UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2016-03-22 | Ecm2 | extracellular matrix protein 2 | Ecm2 | extracellular matrix protein 2, female organ and adipocyte specific | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2014-07-23 | Ecm2 | extracellular matrix protein 2, female organ and adipocyte specific | LOC100361383 | extracellular matrix protein 2-like | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2010-05-05 | LOC100361383 | extracellular matrix protein 2-like | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
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| More on Ecm2 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 2320282 |
| Created: | 2010-05-05 |
| Species: | Rattus norvegicus |
| Last Modified: | 2019-11-27 |
| Status: | ACTIVE |
