ECM2 (extracellular matrix protein 2) - Rat Genome Database

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Gene: ECM2 (extracellular matrix protein 2) Sus scrofa
Analyze
Symbol: ECM2
Name: extracellular matrix protein 2
RGD ID: 14119199
Description: ENCODES a protein that exhibits collagen binding (inferred); collagen V binding (inferred); heparin binding (inferred); INVOLVED IN extracellular matrix organization (ortholog); positive regulation of cell-substrate adhesion (ortholog); ASSOCIATED WITH genetic disease (ortholog); hereditary sensory and autonomic neuropathy type 1 (ortholog); hereditary sensory neuropathy (ortholog); FOUND IN extracellular matrix (inferred); interstitial matrix (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl342,203,171 - 42,243,547 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1342,205,246 - 42,243,746 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2343,457,616 - 43,480,360 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ECM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl342,203,171 - 42,243,547 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1342,205,246 - 42,243,746 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2343,457,616 - 43,480,360 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ECM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38992,493,547 - 92,559,106 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl992,493,554 - 92,536,655 (-)EnsemblGRCh38hg38GRCh38
GRCh37995,255,829 - 95,298,272 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36994,297,420 - 94,338,073 (-)NCBINCBI36Build 36hg18NCBI36
Build 34992,337,153 - 92,377,807NCBI
Celera965,699,616 - 65,740,268 (-)NCBICelera
Cytogenetic Map9q22.31NCBI
HuRef964,933,268 - 64,976,692 (-)NCBIHuRef
CHM1_1995,402,248 - 95,444,814 (-)NCBICHM1_1
T2T-CHM13v2.09104,660,046 - 104,703,254 (-)NCBIT2T-CHM13v2.0
Ecm2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391349,658,259 - 49,686,267 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1349,658,286 - 49,686,265 (+)EnsemblGRCm39 Ensembl
GRCm381349,504,810 - 49,532,789 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1349,504,810 - 49,532,789 (+)EnsemblGRCm38mm10GRCm38
MGSCv371349,600,179 - 49,628,158 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361349,516,747 - 49,544,726 (+)NCBIMGSCv36mm8
Celera1350,595,283 - 50,623,262 (+)NCBICelera
Cytogenetic Map13A5NCBI
cM Map1325.29NCBI
Ecm2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81715,326,359 - 15,358,938 (-)NCBIGRCr8
mRatBN7.21715,120,194 - 15,152,536 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1715,120,196 - 15,152,516 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01715,533,760 - 15,566,403 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1715,533,972 - 15,566,332 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01717,592,210 - 17,624,836 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41721,075,854 - 21,107,455 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1714,850,715 - 14,883,355 (-)NCBICelera
Cytogenetic Map17p14NCBI
Ecm2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555155,283,725 - 5,307,749 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555155,273,277 - 5,308,709 (+)NCBIChiLan1.0ChiLan1.0
ECM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21146,891,955 - 46,934,692 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1946,894,863 - 46,937,033 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0963,617,088 - 63,659,055 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1991,689,304 - 91,731,291 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl991,691,721 - 91,718,230 (-)Ensemblpanpan1.1panPan2
ECM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1198,832,107 - 98,865,084 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl198,832,677 - 98,864,700 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha199,225,966 - 99,258,611 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0199,448,946 - 99,481,590 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl199,448,993 - 99,481,691 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1199,062,018 - 99,094,661 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0198,797,495 - 98,830,420 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0199,553,430 - 99,587,072 (+)NCBIUU_Cfam_GSD_1.0
Ecm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049447,901,376 - 7,933,934 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364872,116,604 - 2,150,398 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364872,117,226 - 2,150,382 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ECM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112103,010,232 - 103,053,472 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12103,011,749 - 103,053,678 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603891,282,537 - 91,325,754 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ecm2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248683,840,109 - 3,888,356 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248683,840,598 - 3,886,074 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ECM2
384 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 3 4 4 2 2 3
Low 7 3 1 21 2 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000024689   ⟹   ENSSSCP00000021997
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl342,204,301 - 42,243,547 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000032452   ⟹   ENSSSCP00000027626
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl342,203,171 - 42,243,547 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000067069   ⟹   ENSSSCP00000063858
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl342,208,528 - 42,243,491 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000069712   ⟹   ENSSSCP00000068290
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl342,205,221 - 42,243,461 (-)Ensembl
RefSeq Acc Id: XM_013995777   ⟹   XP_013851231
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1342,205,246 - 42,243,712 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013995778   ⟹   XP_013851232
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1342,205,247 - 42,243,715 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021086991   ⟹   XP_020942650
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1342,205,246 - 42,243,712 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021086992   ⟹   XP_020942651
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1342,205,247 - 42,243,715 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021086993   ⟹   XP_020942652
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1342,205,247 - 42,243,746 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021086994   ⟹   XP_020942653
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1342,205,247 - 42,243,714 (-)NCBI
Sequence:
RefSeq Acc Id: XP_013851231   ⟸   XM_013995777
- Peptide Label: isoform X2
- UniProtKB: A0A8D0X6M2 (UniProtKB/TrEMBL),   A0A5K1ULL9 (UniProtKB/TrEMBL),   A0A5G2QP49 (UniProtKB/TrEMBL),   A0A8D0JK95 (UniProtKB/TrEMBL),   A0A8D0JK66 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020942650   ⟸   XM_021086991
- Peptide Label: isoform X1
- UniProtKB: A0A8D1A1E3 (UniProtKB/TrEMBL),   A0A5G2QP49 (UniProtKB/TrEMBL),   A0A8D0JK95 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020942652   ⟸   XM_021086993
- Peptide Label: isoform X3
- UniProtKB: A0A480NQL4 (UniProtKB/TrEMBL),   A0A4X1TZ76 (UniProtKB/TrEMBL),   A0A8D1JM09 (UniProtKB/TrEMBL),   I3LD68 (UniProtKB/TrEMBL),   I3LU27 (UniProtKB/TrEMBL),   A0A4X1TYQ8 (UniProtKB/TrEMBL),   A0A8D0UD31 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013851232   ⟸   XM_013995778
- Peptide Label: isoform X2
- UniProtKB: A0A8D0X6M2 (UniProtKB/TrEMBL),   A0A5K1ULL9 (UniProtKB/TrEMBL),   A0A5G2QP49 (UniProtKB/TrEMBL),   A0A8D0JK95 (UniProtKB/TrEMBL),   A0A8D0JK66 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020942651   ⟸   XM_021086992
- Peptide Label: isoform X1
- UniProtKB: A0A8D1A1E3 (UniProtKB/TrEMBL),   A0A5G2QP49 (UniProtKB/TrEMBL),   A0A8D0JK95 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020942653   ⟸   XM_021086994
- Peptide Label: isoform X3
- UniProtKB: A0A480NQL4 (UniProtKB/TrEMBL),   A0A4X1TZ76 (UniProtKB/TrEMBL),   A0A8D1JM09 (UniProtKB/TrEMBL),   I3LD68 (UniProtKB/TrEMBL),   I3LU27 (UniProtKB/TrEMBL),   A0A4X1TYQ8 (UniProtKB/TrEMBL),   A0A8D0UD31 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000021997   ⟸   ENSSSCT00000024689
RefSeq Acc Id: ENSSSCP00000068290   ⟸   ENSSSCT00000069712
RefSeq Acc Id: ENSSSCP00000027626   ⟸   ENSSSCT00000032452
RefSeq Acc Id: ENSSSCP00000063858   ⟸   ENSSSCT00000067069
Protein Domains
VWFC


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000028549 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005027045 UniProtKB/TrEMBL
  ENSSSCG00015075584 UniProtKB/TrEMBL
  ENSSSCG00025013516 UniProtKB/TrEMBL
  ENSSSCG00030047372 UniProtKB/TrEMBL
  ENSSSCG00035049355 UniProtKB/TrEMBL
  ENSSSCG00040063123 UniProtKB/TrEMBL
  ENSSSCG00045007909 UniProtKB/TrEMBL
  ENSSSCG00050001099 UniProtKB/TrEMBL
  ENSSSCG00055004775 UniProtKB/TrEMBL
  ENSSSCG00060055781 UniProtKB/TrEMBL
  ENSSSCG00065023746 UniProtKB/TrEMBL
  ENSSSCG00070013684 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000024689.3 UniProtKB/TrEMBL
  ENSSSCT00000032452 ENTREZGENE
  ENSSSCT00000032452.4 UniProtKB/TrEMBL
  ENSSSCT00000067069 ENTREZGENE
  ENSSSCT00000067069.1 UniProtKB/TrEMBL
  ENSSSCT00000069712 ENTREZGENE
  ENSSSCT00000069712.2 UniProtKB/TrEMBL
  ENSSSCT00005042835.1 UniProtKB/TrEMBL
  ENSSSCT00005042847.1 UniProtKB/TrEMBL
  ENSSSCT00005042871.1 UniProtKB/TrEMBL
  ENSSSCT00005042887.1 UniProtKB/TrEMBL
  ENSSSCT00015101918.1 UniProtKB/TrEMBL
  ENSSSCT00015102003.1 UniProtKB/TrEMBL
  ENSSSCT00015102133.1 UniProtKB/TrEMBL
  ENSSSCT00025017947.1 UniProtKB/TrEMBL
  ENSSSCT00025017998.1 UniProtKB/TrEMBL
  ENSSSCT00025018095.1 UniProtKB/TrEMBL
  ENSSSCT00030066141.1 UniProtKB/TrEMBL
  ENSSSCT00030066170.1 UniProtKB/TrEMBL
  ENSSSCT00035065793.1 UniProtKB/TrEMBL
  ENSSSCT00035065797.1 UniProtKB/TrEMBL
  ENSSSCT00040086126.1 UniProtKB/TrEMBL
  ENSSSCT00040086227.1 UniProtKB/TrEMBL
  ENSSSCT00040086470.1 UniProtKB/TrEMBL
  ENSSSCT00045013295.1 UniProtKB/TrEMBL
  ENSSSCT00045013382.1 UniProtKB/TrEMBL
  ENSSSCT00050001297.1 UniProtKB/TrEMBL
  ENSSSCT00050001304.1 UniProtKB/TrEMBL
  ENSSSCT00050001311.1 UniProtKB/TrEMBL
  ENSSSCT00055009410.1 UniProtKB/TrEMBL
  ENSSSCT00060076006.1 UniProtKB/TrEMBL
  ENSSSCT00060076008.1 UniProtKB/TrEMBL
  ENSSSCT00060076025.1 UniProtKB/TrEMBL
  ENSSSCT00060076029.1 UniProtKB/TrEMBL
  ENSSSCT00065031601.1 UniProtKB/TrEMBL
  ENSSSCT00070027160.1 UniProtKB/TrEMBL
  ENSSSCT00070027377.1 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
  6.20.200.20 UniProtKB/TrEMBL
InterPro ECM2 UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  VWF_dom UniProtKB/TrEMBL
KEGG Report ssc:102166778 UniProtKB/TrEMBL
NCBI Gene ECM2 ENTREZGENE
PANTHER EXTRACELLULAR MATRIX PROTEIN 2 UniProtKB/TrEMBL
  PTHR46544 UniProtKB/TrEMBL
Pfam LRR_8 UniProtKB/TrEMBL
  VWC UniProtKB/TrEMBL
PROSITE LRR UniProtKB/TrEMBL
  VWFC_1 UniProtKB/TrEMBL
  VWFC_2 UniProtKB/TrEMBL
SMART LRR_BAC UniProtKB/TrEMBL
  LRR_TYP UniProtKB/TrEMBL
  VWC UniProtKB/TrEMBL
Superfamily-SCOP FnI-like domain UniProtKB/TrEMBL
  L domain-like UniProtKB/TrEMBL
UniProt A0A480NQL4 ENTREZGENE
  A0A4X1TYQ8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TZ76 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QP49 ENTREZGENE, UniProtKB/TrEMBL
  A0A5K1ULL9 ENTREZGENE
  A0A8D0JK66 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0JK95 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0UD31 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0X6M2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1A1E3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1JM09 ENTREZGENE, UniProtKB/TrEMBL
  I3LD68 ENTREZGENE
  I3LU27 ENTREZGENE
UniProt Secondary A0A480NQL4 UniProtKB/TrEMBL
  A0A5K1ULL9 UniProtKB/TrEMBL
  I3LD68 UniProtKB/TrEMBL
  I3LU27 UniProtKB/TrEMBL
VGNC ID VGNC:87534 ENTREZGENE