Ermard (ER membrane associated RNA degradation) - Rat Genome Database

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Gene: Ermard (ER membrane associated RNA degradation) Heterocephalus glaber
Analyze
Symbol: Ermard
Name: ER membrane associated RNA degradation
RGD ID: 18936961
Description: ASSOCIATED WITH epilepsy (ortholog); genetic disease (ortholog); periventricular nodular heterotopia (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: endoplasmic reticulum membrane-associated RNA degradation protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248505,684,312 - 5,709,584 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248505,683,191 - 5,709,015 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References

Genomics

Comparative Map Data
Ermard
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248505,684,312 - 5,709,584 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248505,683,191 - 5,709,015 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ERMARD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386169,751,306 - 169,781,600 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6169,751,622 - 169,781,600 (+)EnsemblGRCh38hg38GRCh38
GRCh376170,151,718 - 170,181,696 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366169,893,646 - 169,923,542 (+)NCBINCBI36Build 36hg18NCBI36
Build 346169,969,352 - 169,999,240NCBI
Celera6170,861,896 - 170,891,792 (+)NCBICelera
Cytogenetic Map6q27NCBI
HuRef6167,571,485 - 167,601,446 (+)NCBIHuRef
CHM1_16170,413,940 - 170,443,916 (+)NCBICHM1_1
T2T-CHM13v2.06171,105,236 - 171,135,403 (+)NCBIT2T-CHM13v2.0
Ermard
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391715,261,825 - 15,310,307 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1715,261,470 - 15,310,306 (+)EnsemblGRCm39 Ensembl
GRCm381715,041,551 - 15,090,045 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1715,041,208 - 15,090,044 (+)EnsemblGRCm38mm10GRCm38
MGSCv371715,178,576 - 15,201,196 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361714,715,200 - 14,769,186 (+)NCBIMGSCv36mm8
Celera1715,839,838 - 15,854,990 (+)NCBICelera
Cytogenetic Map17A2NCBI
cM Map178.95NCBI
Ermard
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8164,656,414 - 64,675,803 (+)NCBIGRCr8
mRatBN7.2155,983,312 - 56,004,569 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl155,983,403 - 56,002,687 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0156,982,742 - 57,008,076 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl156,982,821 - 57,001,665 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0158,165,821 - 58,185,153 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4153,905,895 - 53,925,656 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1153,909,505 - 53,916,096 (+)NCBI
Celera152,195,633 - 52,219,900 (+)NCBICelera
Cytogenetic Map1q12NCBI
Ermard
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554113,835,751 - 3,865,321 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554113,838,125 - 3,866,282 (-)NCBIChiLan1.0ChiLan1.0
ERMARD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25190,002,047 - 190,032,613 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16187,885,402 - 187,916,024 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06167,823,630 - 167,854,200 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16172,863,406 - 172,891,822 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6172,861,675 - 172,891,822 (+)Ensemblpanpan1.1panPan2
ERMARD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11271,998,431 - 72,024,726 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1271,998,437 - 72,023,512 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1271,758,577 - 71,783,581 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01272,880,117 - 72,905,280 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1272,880,086 - 72,909,110 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11272,232,744 - 72,257,762 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01272,073,611 - 72,098,576 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01272,463,145 - 72,489,411 (+)NCBIUU_Cfam_GSD_1.0
Ermard
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946150,949,595 - 150,989,755 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648918,203,204 - 18,236,552 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648918,201,790 - 18,244,810 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ERMARD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1512,678 - 540,896 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11513,364 - 540,948 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.211,069,587 - 1,092,011 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ERMARD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11397,558,822 - 97,592,030 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604069,555,223 - 69,586,946 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000003554   ⟹   ENSHGLP00000003499
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248505,684,312 - 5,709,584 (+)Ensembl
RefSeq Acc Id: XM_004868842   ⟹   XP_004868899
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248505,683,191 - 5,709,010 (+)NCBI
RefSeq Acc Id: XM_013067092   ⟹   XP_012922546
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248505,683,491 - 5,709,010 (+)NCBI
RefSeq Acc Id: XM_021247608   ⟹   XP_021103267
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248505,683,346 - 5,709,015 (+)NCBI
RefSeq Acc Id: XM_021247609   ⟹   XP_021103268
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248505,683,693 - 5,709,015 (+)NCBI
RefSeq Acc Id: XM_021247610   ⟹   XP_021103269
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248505,683,344 - 5,709,015 (+)NCBI
RefSeq Acc Id: XM_021247611   ⟹   XP_021103270
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248505,683,340 - 5,706,250 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_004868899   ⟸   XM_004868842
- Peptide Label: isoform X4
- UniProtKB: G5C7R5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021103270   ⟸   XM_021247611
- Peptide Label: isoform X6
RefSeq Acc Id: XP_021103269   ⟸   XM_021247610
- Peptide Label: isoform X3
- UniProtKB: G5C7R5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021103267   ⟸   XM_021247608
- Peptide Label: isoform X1
- UniProtKB: G5C7R5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012922546   ⟸   XM_013067092
- Peptide Label: isoform X5
- UniProtKB: G5C7R5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021103268   ⟸   XM_021247609
- Peptide Label: isoform X2
- UniProtKB: G5C7R5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000003499   ⟸   ENSHGLT00000003554


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002582 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000003554 ENTREZGENE
InterPro DUF4209 UniProtKB/TrEMBL
  ERMARD UniProtKB/TrEMBL
NCBI Gene Ermard ENTREZGENE
PANTHER ENDOPLASMIC RETICULUM MEMBRANE-ASSOCIATED RNA DEGRADATION PROTEIN UniProtKB/TrEMBL
  ENDOPLASMIC RETICULUM MEMBRANE-ASSOCIATED RNA DEGRADATION PROTEIN UniProtKB/TrEMBL
Pfam DUF4209 UniProtKB/TrEMBL
UniProt G5C7R5 ENTREZGENE, UniProtKB/TrEMBL