ERMARD (ER membrane associated RNA degradation) - Rat Genome Database

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Gene: ERMARD (ER membrane associated RNA degradation) Sus scrofa
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Symbol: ERMARD
Name: ER membrane associated RNA degradation
RGD ID: 13848724
Description: ASSOCIATED WITH epilepsy (ortholog); periventricular nodular heterotopia (ortholog); Periventricular Nodular Heterotopia 6 (ortholog); FOUND IN integral component of membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: endoplasmic reticulum membrane-associated RNA degradation protein; transmembrane protein C6orf70 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1512,676 - 540,898 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11513,364 - 540,948 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.211,069,587 - 1,092,011 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
ERMARD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1512,676 - 540,898 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11513,364 - 540,948 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.211,069,587 - 1,092,011 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ERMARD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl6169,751,622 - 169,781,600 (+)EnsemblGRCh38hg38GRCh38
GRCh386169,751,622 - 169,781,600 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh376170,151,718 - 170,181,696 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366169,893,646 - 169,923,542 (+)NCBINCBI36hg18NCBI36
Build 346169,969,352 - 169,999,240NCBI
Celera6170,861,896 - 170,891,792 (+)NCBI
Cytogenetic Map6q27NCBI
HuRef6167,571,485 - 167,601,446 (+)NCBIHuRef
CHM1_16170,413,940 - 170,443,916 (+)NCBICHM1_1
Ermard
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391715,261,813 - 15,310,307 (+)NCBIGRCm39mm39
GRCm39 Ensembl1715,261,470 - 15,310,306 (+)Ensembl
GRCm381715,041,551 - 15,090,045 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1715,041,208 - 15,090,044 (+)EnsemblGRCm38mm10GRCm38
MGSCv371715,178,576 - 15,201,196 (+)NCBIGRCm37mm9NCBIm37
MGSCv361714,715,200 - 14,769,186 (+)NCBImm8
Celera1715,839,838 - 15,854,990 (+)NCBICelera
Cytogenetic Map17A2NCBI
Ermard
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2155,983,312 - 56,004,569 (+)NCBI
Rnor_6.0 Ensembl156,982,821 - 57,001,665 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0156,982,742 - 57,008,076 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0158,165,821 - 58,185,153 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4153,905,895 - 53,925,656 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1153,909,505 - 53,916,096 (+)NCBI
Celera152,195,633 - 52,219,900 (+)NCBICelera
Cytogenetic Map1q12NCBI
Ermard
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554113,835,751 - 3,865,321 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554113,838,125 - 3,866,282 (-)NCBIChiLan1.0ChiLan1.0
ERMARD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16172,863,406 - 172,891,822 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6172,861,675 - 172,891,822 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06167,823,630 - 167,854,200 (+)NCBIMhudiblu_PPA_v0panPan3
ERMARD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11271,998,431 - 72,024,726 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1271,998,437 - 72,023,512 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1271,758,577 - 71,783,581 (+)NCBI
ROS_Cfam_1.01272,880,117 - 72,905,280 (+)NCBI
UMICH_Zoey_3.11272,232,744 - 72,257,762 (+)NCBI
UNSW_CanFamBas_1.01272,073,611 - 72,098,576 (+)NCBI
UU_Cfam_GSD_1.01272,463,145 - 72,489,411 (+)NCBI
Ermard
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946150,949,595 - 150,989,755 (+)NCBI
SpeTri2.0NW_00493648918,201,790 - 18,244,810 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ERMARD
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11397,558,822 - 97,592,030 (+)NCBI
Ermard
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248505,683,191 - 5,709,015 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 3 1 1
Low 10 3 3 2 2 22 2 2 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000004434   ⟹   ENSSSCP00000004333
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1512,676 - 538,014 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000037459   ⟹   ENSSSCP00000039361
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1512,676 - 540,898 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000040859   ⟹   ENSSSCP00000043287
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1512,676 - 540,886 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000041743   ⟹   ENSSSCP00000049572
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1512,679 - 538,880 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000055698   ⟹   ENSSSCP00000032637
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1512,679 - 538,474 (-)Ensembl
RefSeq Acc Id: XM_021085566   ⟹   XP_020941225
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11513,364 - 540,874 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021085572   ⟹   XP_020941231
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11513,364 - 540,948 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021085577   ⟹   XP_020941236
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11513,364 - 540,239 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021085588   ⟹   XP_020941247
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11513,364 - 540,238 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021085596   ⟹   XP_020941255
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11513,364 - 540,948 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021085601   ⟹   XP_020941260
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11513,364 - 540,239 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021085606   ⟹   XP_020941265
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11513,364 - 540,239 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021085609   ⟹   XP_020941268
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11513,364 - 540,941 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021085618   ⟹   XP_020941277
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11513,364 - 540,882 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021085623   ⟹   XP_020941282
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11513,364 - 540,877 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021085627   ⟹   XP_020941286
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11513,364 - 538,014 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_020941255   ⟸   XM_021085596
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_020941231   ⟸   XM_021085572
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020941268   ⟸   XM_021085609
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_020941277   ⟸   XM_021085618
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_020941282   ⟸   XM_021085623
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_020941225   ⟸   XM_021085566
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020941265   ⟸   XM_021085606
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_020941236   ⟸   XM_021085577
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020941260   ⟸   XM_021085601
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_020941247   ⟸   XM_021085588
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020941286   ⟸   XM_021085627
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: ENSSSCP00000043287   ⟸   ENSSSCT00000040859
RefSeq Acc Id: ENSSSCP00000032637   ⟸   ENSSSCT00000055698
RefSeq Acc Id: ENSSSCP00000049572   ⟸   ENSSSCT00000041743
RefSeq Acc Id: ENSSSCP00000039361   ⟸   ENSSSCT00000037459
RefSeq Acc Id: ENSSSCP00000004333   ⟸   ENSSSCT00000004434
Protein Domains
DUF4209


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004010 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070027352 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000004333 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000032637 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000039361 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000043287 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000049572 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070046531 UniProtKB/TrEMBL
  ENSSSCP00070046533 UniProtKB/TrEMBL
  ENSSSCP00070046540 UniProtKB/TrEMBL
  ENSSSCP00070046543 UniProtKB/TrEMBL
  ENSSSCP00070046544 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000004434 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000037459 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000040859 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000041743 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000055698 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070054860 UniProtKB/TrEMBL
  ENSSSCT00070054862 UniProtKB/TrEMBL
  ENSSSCT00070054869 UniProtKB/TrEMBL
  ENSSSCT00070054872 UniProtKB/TrEMBL
  ENSSSCT00070054873 UniProtKB/TrEMBL
InterPro DUF4209 UniProtKB/TrEMBL
  ERMARD UniProtKB/TrEMBL
NCBI Gene ERMARD ENTREZGENE
PANTHER PTHR31701 UniProtKB/TrEMBL
Pfam DUF4209 UniProtKB/TrEMBL
UniProt A0A286ZM47_PIG UniProtKB/TrEMBL
  A0A287A5Z3_PIG UniProtKB/TrEMBL
  A0A287AH30_PIG UniProtKB/TrEMBL
  A0A287AZI3_PIG UniProtKB/TrEMBL
  A0A4X1VSD4_PIG UniProtKB/TrEMBL
  A0A4X1VWW8_PIG UniProtKB/TrEMBL
  A0A4X1VXB8_PIG UniProtKB/TrEMBL
  A0A4X1VZ47_PIG UniProtKB/TrEMBL
  F1SC01_PIG UniProtKB/TrEMBL
VGNC ID VGNC:87776 ENTREZGENE