ERMARD (ER membrane associated RNA degradation) - Rat Genome Database

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Gene: ERMARD (ER membrane associated RNA degradation) Pan paniscus
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Symbol: ERMARD
Name: ER membrane associated RNA degradation
RGD ID: 11717926
Description: ASSOCIATED WITH epilepsy (ortholog); periventricular nodular heterotopia (ortholog); Periventricular Nodular Heterotopia 6 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: transmembrane protein C6orf70-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16172,863,406 - 172,891,822 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6172,861,675 - 172,891,822 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06167,823,630 - 167,854,200 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
ERMARD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16172,863,406 - 172,891,822 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6172,861,675 - 172,891,822 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06167,823,630 - 167,854,200 (+)NCBIMhudiblu_PPA_v0panPan3
ERMARD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl6169,751,622 - 169,781,600 (+)EnsemblGRCh38hg38GRCh38
GRCh386169,751,622 - 169,781,600 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh376170,151,718 - 170,181,696 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366169,893,646 - 169,923,542 (+)NCBINCBI36hg18NCBI36
Build 346169,969,352 - 169,999,240NCBI
Celera6170,861,896 - 170,891,792 (+)NCBI
Cytogenetic Map6q27NCBI
HuRef6167,571,485 - 167,601,446 (+)NCBIHuRef
CHM1_16170,413,940 - 170,443,916 (+)NCBICHM1_1
Gm3435
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391715,230,102 - 15,242,711 (+)NCBIGRCm39mm39
GRCm39 Ensembl1715,230,438 - 15,242,711 (+)Ensembl
GRCm381715,009,840 - 15,022,449 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1715,010,176 - 15,022,449 (+)EnsemblGRCm38mm10GRCm38
MGSCv371715,146,804 - 15,159,413 (+)NCBIGRCm37mm9NCBIm37
MGSCv361715,144,578 - 15,159,238 (+)NCBImm8
Cytogenetic Map17A2NCBI
Ermard
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2155,983,312 - 56,004,569 (+)NCBI
Rnor_6.0 Ensembl156,982,821 - 57,001,665 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0156,982,742 - 57,008,076 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0158,165,821 - 58,185,153 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4153,905,895 - 53,925,656 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1153,909,505 - 53,916,096 (+)NCBI
Celera152,195,633 - 52,219,900 (+)NCBICelera
Cytogenetic Map1q12NCBI
Ermard
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554113,835,751 - 3,865,321 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554113,838,125 - 3,866,282 (-)NCBIChiLan1.0ChiLan1.0
ERMARD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11271,998,431 - 72,024,726 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1271,998,437 - 72,023,512 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1271,758,577 - 71,783,581 (+)NCBI
ROS_Cfam_1.01272,880,117 - 72,905,280 (+)NCBI
UMICH_Zoey_3.11272,232,744 - 72,257,762 (+)NCBI
UNSW_CanFamBas_1.01272,073,611 - 72,098,576 (+)NCBI
UU_Cfam_GSD_1.01272,463,145 - 72,489,411 (+)NCBI
Ermard
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946150,949,595 - 150,989,755 (+)NCBI
SpeTri2.0NW_00493648918,201,790 - 18,244,810 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ERMARD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1512,676 - 540,898 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11513,364 - 540,948 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.211,069,587 - 1,092,011 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ERMARD
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11397,558,822 - 97,592,030 (+)NCBI
Ermard
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248505,683,191 - 5,709,015 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000061194   ⟹   ENSPPAP00000038291
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl6172,861,675 - 172,891,822 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000061200   ⟹   ENSPPAP00000038297
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl6172,861,675 - 172,891,822 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000061214   ⟹   ENSPPAP00000038311
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl6172,863,984 - 172,891,812 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000061218   ⟹   ENSPPAP00000038315
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl6172,863,984 - 172,891,812 (+)Ensembl
RefSeq Acc Id: XM_008975157   ⟹   XP_008973405
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.16172,863,406 - 172,891,822 (+)NCBI
Mhudiblu_PPA_v06167,823,911 - 167,854,200 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034963280   ⟹   XP_034819171
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v06167,823,630 - 167,854,200 (+)NCBI
RefSeq Acc Id: XM_034963281   ⟹   XP_034819172
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v06167,823,630 - 167,851,016 (+)NCBI
RefSeq Acc Id: XM_034963282   ⟹   XP_034819173
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v06167,823,630 - 167,854,200 (+)NCBI
RefSeq Acc Id: XM_034963283   ⟹   XP_034819174
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v06167,823,630 - 167,854,200 (+)NCBI
RefSeq Acc Id: XM_034963284   ⟹   XP_034819175
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v06167,823,911 - 167,854,200 (+)NCBI
RefSeq Acc Id: XM_034963285   ⟹   XP_034819176
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v06167,823,911 - 167,854,200 (+)NCBI
RefSeq Acc Id: XM_034963286   ⟹   XP_034819177
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v06167,823,813 - 167,854,200 (+)NCBI
RefSeq Acc Id: XM_034963287   ⟹   XP_034819178
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v06167,823,911 - 167,854,200 (+)NCBI
RefSeq Acc Id: XR_004672296
RefSeq Status:
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v06167,823,630 - 167,854,073 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_008973405   ⟸   XM_008975157
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_034819171   ⟸   XM_034963280
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034819173   ⟸   XM_034963282
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034819174   ⟸   XM_034963283
- Peptide Label: isoform X4
RefSeq Acc Id: XP_034819172   ⟸   XM_034963281
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034819177   ⟸   XM_034963286
- Peptide Label: isoform X5
RefSeq Acc Id: XP_034819178   ⟸   XM_034963287
- Peptide Label: isoform X5
RefSeq Acc Id: XP_034819175   ⟸   XM_034963284
- Peptide Label: isoform X5
RefSeq Acc Id: XP_034819176   ⟸   XM_034963285
- Peptide Label: isoform X5
RefSeq Acc Id: ENSPPAP00000038297   ⟸   ENSPPAT00000061200
RefSeq Acc Id: ENSPPAP00000038315   ⟸   ENSPPAT00000061218
RefSeq Acc Id: ENSPPAP00000038311   ⟸   ENSPPAT00000061214
RefSeq Acc Id: ENSPPAP00000038291   ⟸   ENSPPAT00000061194
Protein Domains
DUF4209


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000041843 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000038291 UniProtKB/TrEMBL
  ENSPPAP00000038297 UniProtKB/TrEMBL
  ENSPPAP00000038311 UniProtKB/TrEMBL
  ENSPPAP00000038315 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000061194 UniProtKB/TrEMBL
  ENSPPAT00000061200 UniProtKB/TrEMBL
  ENSPPAT00000061214 UniProtKB/TrEMBL
  ENSPPAT00000061218 UniProtKB/TrEMBL
InterPro DUF4209 UniProtKB/TrEMBL
  ERMARD UniProtKB/TrEMBL
NCBI Gene ERMARD ENTREZGENE
PANTHER PTHR31701 UniProtKB/TrEMBL
Pfam DUF4209 UniProtKB/TrEMBL
UniProt A0A2R9C8M2_PANPA UniProtKB/TrEMBL
  A0A2R9C8P0_PANPA UniProtKB/TrEMBL
  A0A2R9C8P7_PANPA UniProtKB/TrEMBL
  A0A2R9CJC5_PANPA UniProtKB/TrEMBL