Ankrd10 (ankyrin repeat domain 10) - Rat Genome Database

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Gene: Ankrd10 (ankyrin repeat domain 10) Heterocephalus glaber
Analyze
Symbol: Ankrd10
Name: ankyrin repeat domain 10
RGD ID: 18935265
Description: ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); factor X deficiency (ortholog); FOUND IN nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ankyrin repeat domain-containing protein 10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247932,046,912 - 2,071,784 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247932,046,796 - 2,072,603 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Ankrd10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247932,046,912 - 2,071,784 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247932,046,796 - 2,072,603 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ANKRD10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813110,878,540 - 110,915,069 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13110,878,540 - 110,915,069 (-)EnsemblGRCh38hg38GRCh38
GRCh3713111,530,887 - 111,567,416 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3613110,328,888 - 110,365,417 (-)NCBINCBI36Build 36hg18NCBI36
Build 3413110,328,888 - 110,365,417NCBI
Celera1392,377,096 - 92,413,637 (-)NCBICelera
Cytogenetic Map13q34NCBI
HuRef1392,129,277 - 92,165,583 (-)NCBIHuRef
CHM1_113111,499,320 - 111,535,592 (-)NCBICHM1_1
T2T-CHM13v2.013110,108,631 - 110,144,952 (-)NCBIT2T-CHM13v2.0
Ankrd10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39811,661,581 - 11,694,617 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl811,661,583 - 11,685,757 (-)EnsemblGRCm39 Ensembl
GRCm38811,611,581 - 11,635,926 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl811,611,583 - 11,635,757 (-)EnsemblGRCm38mm10GRCm38
MGSCv37811,611,583 - 11,635,754 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36811,611,555 - 11,635,661 (-)NCBIMGSCv36mm8
Celera811,786,923 - 11,811,099 (-)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map85.73NCBI
Ankrd10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81684,566,021 - 84,591,849 (+)NCBIGRCr8
mRatBN7.21677,866,489 - 77,889,745 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1677,864,261 - 77,889,745 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1683,146,972 - 83,170,221 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01686,599,610 - 86,622,859 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01681,841,711 - 81,864,966 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01683,205,898 - 83,229,147 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1683,206,004 - 83,228,194 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01682,674,123 - 82,697,366 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41682,719,075 - 82,742,218 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11682,683,443 - 82,728,069 (+)NCBI
Celera1675,666,484 - 75,689,725 (+)NCBICelera
Cytogenetic Map16q12.5NCBI
Ankrd10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554041,928,307 - 1,954,193 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554041,928,285 - 1,954,193 (+)NCBIChiLan1.0ChiLan1.0
ANKRD10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v214112,376,756 - 112,413,464 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan113111,058,602 - 111,105,031 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01392,017,092 - 92,053,485 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113111,130,933 - 111,177,018 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13111,130,933 - 111,177,018 (-)Ensemblpanpan1.1panPan2
ANKRD10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12259,059,329 - 59,092,225 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2259,059,519 - 59,092,192 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2258,769,806 - 58,802,697 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02259,682,861 - 59,715,796 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2259,682,861 - 59,715,782 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12259,184,535 - 59,217,419 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02259,176,685 - 59,209,568 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02259,212,161 - 59,245,075 (-)NCBIUU_Cfam_GSD_1.0
Ankrd10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945193,896,199 - 193,926,454 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364722,025,695 - 2,056,126 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364722,025,701 - 2,055,956 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKRD10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1177,323,358 - 77,356,112 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11177,323,355 - 77,356,049 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ANKRD10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1389,094,308 - 89,130,685 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl389,094,218 - 89,130,686 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604645,862,635 - 45,899,111 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000002732   ⟹   ENSHGLP00000002678
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247932,046,912 - 2,071,784 (+)Ensembl
RefSeq Acc Id: XM_021239354   ⟹   XP_021095013
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247932,046,802 - 2,072,603 (+)NCBI
RefSeq Acc Id: XM_021239355   ⟹   XP_021095014
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247932,046,796 - 2,071,555 (+)NCBI
RefSeq Acc Id: XM_021239356   ⟹   XP_021095015
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247932,046,801 - 2,070,187 (+)NCBI
RefSeq Acc Id: XM_021239357   ⟹   XP_021095016
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247932,056,026 - 2,072,603 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021095013 (Get FASTA)   NCBI Sequence Viewer  
  XP_021095014 (Get FASTA)   NCBI Sequence Viewer  
  XP_021095015 (Get FASTA)   NCBI Sequence Viewer  
  XP_021095016 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000002678
RefSeq Acc Id: XP_021095014   ⟸   XM_021239355
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021095015   ⟸   XM_021239356
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021095013   ⟸   XM_021239354
- Peptide Label: isoform X1
- UniProtKB: G5AZ42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021095016   ⟸   XM_021239357
- Peptide Label: isoform X4
Ensembl Acc Id: ENSHGLP00000002678   ⟸   ENSHGLT00000002732


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002018 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000002732 ENTREZGENE
Gene3D-CATH Ankyrin repeat-containing domain UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
NCBI Gene Ankrd10 ENTREZGENE
PANTHER ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 10 UniProtKB/TrEMBL
  ANKYRIN REPEAT FAMILY PROTEIN UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP Ankyrin repeat UniProtKB/TrEMBL
UniProt A0AAX6RE26_HETGA UniProtKB/TrEMBL
  A0AAX6RE37_HETGA UniProtKB/TrEMBL
  A0AAX6REX3_HETGA UniProtKB/TrEMBL
  A0AAX6RGB1_HETGA UniProtKB/TrEMBL
  G5AZ42 ENTREZGENE, UniProtKB/TrEMBL