Ankrd10 (ankyrin repeat domain 10) - Rat Genome Database

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Gene: Ankrd10 (ankyrin repeat domain 10) Rattus norvegicus
Analyze
Symbol: Ankrd10
Name: ankyrin repeat domain 10
RGD ID: 1310501
Description: Predicted to be located in nucleoplasm. Orthologous to human ANKRD10 (ankyrin repeat domain 10); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ankyrin repeat domain-containing protein 10; LOC361183
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21677,866,489 - 77,889,745 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1677,864,261 - 77,889,745 (+)Ensembl
Rnor_6.01683,205,898 - 83,229,147 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1683,206,004 - 83,228,194 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01682,674,123 - 82,697,366 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41682,719,075 - 82,742,218 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11682,683,443 - 82,728,069 (+)NCBI
Celera1675,666,484 - 75,689,725 (+)NCBICelera
Cytogenetic Map16q12.5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Ankrd10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21677,866,489 - 77,889,745 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1677,864,261 - 77,889,745 (+)Ensembl
Rnor_6.01683,205,898 - 83,229,147 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1683,206,004 - 83,228,194 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01682,674,123 - 82,697,366 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41682,719,075 - 82,742,218 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11682,683,443 - 82,728,069 (+)NCBI
Celera1675,666,484 - 75,689,725 (+)NCBICelera
Cytogenetic Map16q12.5NCBI
ANKRD10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813110,878,540 - 110,915,069 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl13110,878,540 - 110,915,069 (-)EnsemblGRCh38hg38GRCh38
GRCh3713111,530,887 - 111,567,416 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3613110,328,888 - 110,365,417 (-)NCBINCBI36hg18NCBI36
Build 3413110,328,888 - 110,365,417NCBI
Celera1392,377,096 - 92,413,637 (-)NCBI
Cytogenetic Map13q34NCBI
HuRef1392,129,277 - 92,165,583 (-)NCBIHuRef
CHM1_113111,499,320 - 111,535,592 (-)NCBICHM1_1
T2T-CHM13v2.013110,108,631 - 110,144,952 (-)NCBI
Ankrd10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39811,661,581 - 11,694,617 (-)NCBIGRCm39mm39
GRCm39 Ensembl811,661,583 - 11,685,757 (-)Ensembl
GRCm38811,611,581 - 11,635,926 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl811,611,583 - 11,635,757 (-)EnsemblGRCm38mm10GRCm38
MGSCv37811,611,583 - 11,635,754 (-)NCBIGRCm37mm9NCBIm37
MGSCv36811,611,555 - 11,635,661 (-)NCBImm8
Celera811,786,923 - 11,811,099 (-)NCBICelera
Cytogenetic Map8A1.1NCBI
Ankrd10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554041,928,307 - 1,954,193 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554041,928,285 - 1,954,193 (+)NCBIChiLan1.0ChiLan1.0
ANKRD10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.113111,130,933 - 111,177,018 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13111,130,933 - 111,177,018 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01392,017,092 - 92,053,485 (-)NCBIMhudiblu_PPA_v0panPan3
ANKRD10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12259,059,329 - 59,092,225 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2259,059,519 - 59,092,192 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2258,769,806 - 58,802,697 (-)NCBI
ROS_Cfam_1.02259,682,861 - 59,715,796 (-)NCBI
ROS_Cfam_1.0 Ensembl2259,682,861 - 59,715,782 (-)Ensembl
UMICH_Zoey_3.12259,184,535 - 59,217,419 (-)NCBI
UNSW_CanFamBas_1.02259,176,685 - 59,209,568 (-)NCBI
UU_Cfam_GSD_1.02259,212,161 - 59,245,075 (-)NCBI
Ankrd10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945193,896,199 - 193,926,454 (-)NCBI
SpeTri2.0NW_0049364722,025,701 - 2,055,956 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKRD10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1177,323,358 - 77,356,112 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11177,323,355 - 77,356,049 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ANKRD10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1389,094,308 - 89,130,685 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl389,094,218 - 89,130,686 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604645,862,635 - 45,899,111 (-)NCBIVero_WHO_p1.0
Ankrd10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247932,046,912 - 2,071,784 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247932,046,796 - 2,072,603 (+)NCBIHetGla_female_1.0hetGla2


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)163775215682752156Rat
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164239634584729064Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165272646484729064Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165272646484729064Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165272646484729064Rat
631525Pia14Pristane induced arthritis QTL 144.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)165571108783402471Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:130
Count of miRNA genes:100
Interacting mature miRNAs:122
Transcripts:ENSRNOT00000018870
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 32 16 19 16 8 11 74 35 40 11 8
Low 25 25 25 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001271219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC098779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000018870   ⟹   ENSRNOP00000018870
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1683,206,004 - 83,228,194 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095735   ⟹   ENSRNOP00000089615
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1677,864,261 - 77,889,745 (+)Ensembl
RefSeq Acc Id: NM_001271219   ⟹   NP_001258148
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21677,866,489 - 77,889,745 (+)NCBI
Rnor_6.01683,205,898 - 83,229,147 (+)NCBI
Rnor_5.01682,674,123 - 82,697,366 (+)NCBI
Celera1675,666,484 - 75,689,725 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006253453   ⟹   XP_006253515
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21677,867,107 - 77,889,745 (+)NCBI
Rnor_6.01683,206,479 - 83,229,147 (+)NCBI
Rnor_5.01682,674,123 - 82,697,366 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006253454   ⟹   XP_006253516
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21677,868,357 - 77,889,745 (+)NCBI
Rnor_6.01683,206,835 - 83,229,147 (+)NCBI
Rnor_5.01682,674,123 - 82,697,366 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006253459   ⟹   XP_006253521
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21677,869,047 - 77,889,745 (+)NCBI
Rnor_6.01683,220,299 - 83,229,147 (+)NCBI
Rnor_5.01682,674,123 - 82,697,366 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039094687   ⟹   XP_038950615
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21677,869,047 - 77,889,745 (+)NCBI
RefSeq Acc Id: XM_039094688   ⟹   XP_038950616
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21677,868,966 - 77,889,745 (+)NCBI
RefSeq Acc Id: XM_039094689   ⟹   XP_038950617
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21677,867,138 - 77,889,745 (+)NCBI
RefSeq Acc Id: XM_039094690   ⟹   XP_038950618
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21677,868,966 - 77,889,745 (+)NCBI
RefSeq Acc Id: XM_039094691   ⟹   XP_038950619
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21677,868,966 - 77,889,745 (+)NCBI
RefSeq Acc Id: XM_039094692   ⟹   XP_038950620
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21677,868,966 - 77,889,745 (+)NCBI
RefSeq Acc Id: XM_039094693   ⟹   XP_038950621
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21677,868,966 - 77,889,745 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001258148   ⟸   NM_001271219
- UniProtKB: F1LPK2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253515   ⟸   XM_006253453
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006253516   ⟸   XM_006253454
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006253521   ⟸   XM_006253459
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000018870   ⟸   ENSRNOT00000018870
RefSeq Acc Id: XP_038950617   ⟸   XM_039094689
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038950616   ⟸   XM_039094688
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038950618   ⟸   XM_039094690
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038950619   ⟸   XM_039094691
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038950621   ⟸   XM_039094693
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038950620   ⟸   XM_039094692
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038950615   ⟸   XM_039094687
- Peptide Label: isoform X3
RefSeq Acc Id: ENSRNOP00000089615   ⟸   ENSRNOT00000095735

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LPK2-F1-model_v2 AlphaFold F1LPK2 1-415 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310501 AgrOrtholog
BioCyc Gene G2FUF-10659 BioCyc
Ensembl Genes ENSRNOG00000013618 Ensembl
  ENSRNOG00000064616 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000089615.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000095735.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7374447 IMAGE-MGC_LOAD
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
MGC_CLONE MGC:112811 IMAGE-MGC_LOAD
NCBI Gene 361183 ENTREZGENE
Pfam Ank_2 UniProtKB/TrEMBL
PhenoGen Ankrd10 PhenoGen
PROSITE ANK_REPEAT UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt A0A8I6AA84_RAT UniProtKB/TrEMBL
  F1LPK2 ENTREZGENE
  Q4G039_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Ankrd10  ankyrin repeat domain 10  Ankrd10_predicted  ankyrin repeat domain 10 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Ankrd10_predicted  ankyrin repeat domain 10 (predicted)      Symbol and Name status set to approved 70820 APPROVED