Ankrd10 (ankyrin repeat domain 10) - Rat Genome Database

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Gene: Ankrd10 (ankyrin repeat domain 10) Chinchilla lanigera
Analyze
Symbol: Ankrd10
Name: ankyrin repeat domain 10
RGD ID: 9063939
Description: ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); combined oxidative phosphorylation deficiency 27 (ortholog); factor X deficiency (ortholog); FOUND IN nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ankyrin repeat domain-containing protein 10
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554041,928,307 - 1,954,193 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554041,928,285 - 1,954,193 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Ankrd10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554041,928,307 - 1,954,193 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554041,928,285 - 1,954,193 (+)NCBIChiLan1.0ChiLan1.0
ANKRD10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813110,878,540 - 110,915,069 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl13110,878,540 - 110,915,069 (-)EnsemblGRCh38hg38GRCh38
GRCh3713111,530,887 - 111,567,416 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3613110,328,888 - 110,365,417 (-)NCBINCBI36hg18NCBI36
Build 3413110,328,888 - 110,365,417NCBI
Celera1392,377,096 - 92,413,637 (-)NCBI
Cytogenetic Map13q34NCBI
HuRef1392,129,277 - 92,165,583 (-)NCBIHuRef
CHM1_113111,499,320 - 111,535,592 (-)NCBICHM1_1
T2T-CHM13v2.013110,108,631 - 110,144,952 (-)NCBI
Ankrd10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39811,661,581 - 11,694,617 (-)NCBIGRCm39mm39
GRCm39 Ensembl811,661,583 - 11,685,757 (-)Ensembl
GRCm38811,611,581 - 11,635,926 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl811,611,583 - 11,635,757 (-)EnsemblGRCm38mm10GRCm38
MGSCv37811,611,583 - 11,635,754 (-)NCBIGRCm37mm9NCBIm37
MGSCv36811,611,555 - 11,635,661 (-)NCBImm8
Celera811,786,923 - 11,811,099 (-)NCBICelera
Cytogenetic Map8A1.1NCBI
Ankrd10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21677,866,489 - 77,889,745 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1677,864,261 - 77,889,745 (+)Ensembl
Rnor_6.01683,205,898 - 83,229,147 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1683,206,004 - 83,228,194 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01682,674,123 - 82,697,366 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41682,719,075 - 82,742,218 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11682,683,443 - 82,728,069 (+)NCBI
Celera1675,666,484 - 75,689,725 (+)NCBICelera
Cytogenetic Map16q12.5NCBI
ANKRD10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.113111,130,933 - 111,177,018 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13111,130,933 - 111,177,018 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01392,017,092 - 92,053,485 (-)NCBIMhudiblu_PPA_v0panPan3
ANKRD10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12259,059,329 - 59,092,225 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2259,059,519 - 59,092,192 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2258,769,806 - 58,802,697 (-)NCBI
ROS_Cfam_1.02259,682,861 - 59,715,796 (-)NCBI
ROS_Cfam_1.0 Ensembl2259,682,861 - 59,715,782 (-)Ensembl
UMICH_Zoey_3.12259,184,535 - 59,217,419 (-)NCBI
UNSW_CanFamBas_1.02259,176,685 - 59,209,568 (-)NCBI
UU_Cfam_GSD_1.02259,212,161 - 59,245,075 (-)NCBI
Ankrd10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945193,896,199 - 193,926,454 (-)NCBI
SpeTri2.0NW_0049364722,025,701 - 2,055,956 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKRD10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1177,323,358 - 77,356,112 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11177,323,355 - 77,356,049 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ANKRD10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1389,094,308 - 89,130,685 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl389,094,218 - 89,130,686 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604645,862,635 - 45,899,111 (-)NCBIVero_WHO_p1.0
Ankrd10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247932,046,912 - 2,071,784 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247932,046,796 - 2,072,603 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000014583   ⟹   ENSCLAP00000014425
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554041,928,307 - 1,954,193 (+)Ensembl
RefSeq Acc Id: XM_005373997   ⟹   XP_005374054
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554041,928,307 - 1,954,193 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013515744   ⟹   XP_013371198
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554041,938,900 - 1,954,193 (+)NCBI
Sequence:
RefSeq Acc Id: XR_259288
RefSeq Status:
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554041,928,285 - 1,952,857 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005374054 (Get FASTA)   NCBI Sequence Viewer  
  XP_013371198 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005374054   ⟸   XM_005373997
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013371198   ⟸   XM_013515744
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000014425   ⟸   ENSCLAT00000014583


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009950 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000014425 ENTREZGENE
  ENSCLAP00000014425.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000014583 ENTREZGENE
  ENSCLAT00000014583.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
NCBI Gene Ankrd10 ENTREZGENE
Pfam Ank_2 UniProtKB/TrEMBL
PROSITE ANK_REPEAT UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt A0A8C2YPU0_CHILA UniProtKB/TrEMBL