Tnip2 (TNFAIP3 interacting protein 2) - Rat Genome Database

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Gene: Tnip2 (TNFAIP3 interacting protein 2) Heterocephalus glaber
Analyze
Symbol: Tnip2
Name: TNFAIP3 interacting protein 2
RGD ID: 18934000
Description: ENCODES a protein that exhibits polyubiquitin modification-dependent protein binding (ortholog); protein kinase binding (ortholog); INVOLVED IN CD40 signaling pathway (ortholog); cellular response to lipopolysaccharide (ortholog); interleukin-1-mediated signaling pathway (ortholog); ASSOCIATED WITH cherubism (ortholog); Ellis-Van Creveld syndrome (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: TNFAIP3-interacting protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475524,976,361 - 25,001,397 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475524,976,375 - 24,995,150 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tnip2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475524,976,361 - 25,001,397 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475524,976,375 - 24,995,150 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TNIP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3842,741,648 - 2,756,336 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl42,741,648 - 2,756,342 (-)EnsemblGRCh38hg38GRCh38
GRCh3742,743,375 - 2,758,063 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3642,713,185 - 2,727,859 (-)NCBINCBI36Build 36hg18NCBI36
Build 3442,780,592 - 2,795,267NCBI
Celera42,654,688 - 2,669,415 (-)NCBICelera
Cytogenetic Map4p16.3NCBI
HuRef42,682,483 - 2,696,862 (-)NCBIHuRef
CHM1_142,741,351 - 2,756,073 (-)NCBICHM1_1
T2T-CHM13v2.042,740,398 - 2,755,095 (-)NCBIT2T-CHM13v2.0
Tnip2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39534,653,440 - 34,671,323 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl534,653,431 - 34,671,335 (-)EnsemblGRCm39 Ensembl
GRCm38534,496,096 - 34,513,979 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl534,496,087 - 34,513,991 (-)EnsemblGRCm38mm10GRCm38
MGSCv37534,838,745 - 34,856,628 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36534,812,953 - 34,830,836 (-)NCBIMGSCv36mm8
Celera531,967,000 - 31,984,842 (-)NCBICelera
Cytogenetic Map5B2NCBI
cM Map517.89NCBI
Tnip2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81480,452,936 - 80,470,141 (+)NCBIGRCr8
mRatBN7.21476,228,350 - 76,245,553 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1476,228,371 - 76,275,265 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1480,680,797 - 80,698,114 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01481,921,444 - 81,938,761 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01478,366,692 - 78,384,009 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01481,487,934 - 81,505,889 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1481,488,008 - 81,504,686 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01482,175,144 - 82,192,502 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41481,870,935 - 81,888,169 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11481,873,325 - 81,890,560 (+)NCBI
Celera1475,152,826 - 75,170,060 (+)NCBICelera
Cytogenetic Map14q21NCBI
Tnip2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555141,682,641 - 1,687,881 (-)NCBIChiLan1.0ChiLan1.0
TNIP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v233,077,308 - 3,092,199 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan143,013,213 - 3,028,094 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v042,884,265 - 2,899,160 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.142,787,594 - 2,793,893 (-)NCBIpanpan1.1PanPan1.1panPan2
TNIP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1361,511,676 - 61,535,480 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha364,094,717 - 64,118,689 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0361,987,047 - 62,011,284 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl361,987,047 - 62,012,472 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1361,478,352 - 61,502,338 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0361,683,311 - 61,707,304 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0362,042,935 - 62,067,151 (+)NCBIUU_Cfam_GSD_1.0
Tnip2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528567,105,267 - 67,139,845 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647720,834,849 - 20,841,535 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647720,810,188 - 20,841,537 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNIP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl81,533,429 - 1,554,683 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.181,530,534 - 1,554,677 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.281,115,215 - 1,136,000 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TNIP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12746,001,814 - 46,017,676 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2746,001,872 - 46,018,494 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660512,366,620 - 2,381,224 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000007256   ⟹   ENSHGLP00000007171
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475524,976,361 - 25,001,397 (+)Ensembl
RefSeq Acc Id: XM_004847383   ⟹   XP_004847440
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475524,976,376 - 24,995,150 (+)NCBI
RefSeq Acc Id: XM_021260393   ⟹   XP_021116052
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475524,976,375 - 24,995,150 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004847440 (Get FASTA)   NCBI Sequence Viewer  
  XP_021116052 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000007171
Reference Protein Sequences
RefSeq Acc Id: XP_021116052   ⟸   XM_021260393
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004847440   ⟸   XM_004847383
- Peptide Label: isoform X2
RefSeq Acc Id: ENSHGLP00000007171   ⟸   ENSHGLT00000007256


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005230 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000007256 ENTREZGENE
NCBI Gene Tnip2 ENTREZGENE