Ptprq (protein tyrosine phosphatase receptor type Q) - Rat Genome Database

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Gene: Ptprq (protein tyrosine phosphatase receptor type Q) Heterocephalus glaber
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Symbol: Ptprq
Name: protein tyrosine phosphatase receptor type Q
RGD ID: 18932396
Description: ENCODES a protein that exhibits histone H2AXY142 phosphatase activity (inferred); non-membrane spanning protein tyrosine phosphatase activity (inferred); phosphoprotein phosphatase activity (inferred); INVOLVED IN detection of mechanical stimulus involved in sensory perception of sound (ortholog); hematopoietic progenitor cell differentiation (ortholog); inner ear morphogenesis (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; ASSOCIATED WITH autosomal dominant centronuclear myopathy (ortholog); autosomal dominant nonsyndromic deafness 73 (ortholog); autosomal recessive nonsyndromic deafness (ortholog); FOUND IN apical plasma membrane (ortholog); stereocilium base (ortholog); stereocilium bundle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: phosphatidylinositol phosphatase PTPRQ
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475017,622,627 - 17,863,899 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475017,621,520 - 17,863,902 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Ptprq
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475017,622,627 - 17,863,899 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475017,621,520 - 17,863,902 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PTPRQ
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381280,444,235 - 80,680,273 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1280,402,178 - 80,680,273 (+)EnsemblGRCh38hg38GRCh38
GRCh371280,838,015 - 81,074,052 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361279,363,383 - 79,531,770 (+)NCBINCBI36Build 36hg18NCBI36
Celera1280,503,778 - 80,740,182 (+)NCBICelera
Cytogenetic Map12q21.31NCBI
HuRef1277,895,115 - 78,130,849 (+)NCBIHuRef
CHM1_11280,804,585 - 81,040,375 (+)NCBICHM1_1
T2T-CHM13v2.01280,422,862 - 80,658,975 (+)NCBIT2T-CHM13v2.0
Ptprq
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910107,350,224 - 107,555,939 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10107,352,910 - 107,555,912 (-)EnsemblGRCm39 Ensembl
GRCm3810107,514,363 - 107,720,098 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10107,517,049 - 107,720,051 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710106,954,416 - 107,157,083 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610106,921,470 - 107,124,137 (-)NCBIMGSCv36mm8
Celera10109,459,813 - 109,656,738 (-)NCBICelera
Cytogenetic Map10D1NCBI
cM Map1055.97NCBI
Ptprq
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8744,720,916 - 44,903,291 (-)NCBIGRCr8
mRatBN7.2742,834,455 - 43,016,807 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl742,837,109 - 43,016,917 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx744,746,942 - 44,929,416 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0746,950,023 - 47,132,521 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0746,727,852 - 46,910,339 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0749,763,657 - 50,034,932 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl749,763,657 - 50,034,932 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0749,939,446 - 50,045,544 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0749,773,565 - 49,852,881 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4746,224,075 - 46,400,107 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1746,244,345 - 46,420,378 (-)NCBI
Celera739,709,561 - 39,889,789 (-)NCBICelera
RH 3.4 Map7352.32RGD
Cytogenetic Map7q21NCBI
Ptprq
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540519,123,905 - 19,318,619 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540519,123,905 - 19,318,619 (+)NCBIChiLan1.0ChiLan1.0
PTPRQ
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21088,485,852 - 88,728,258 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11288,482,247 - 88,724,653 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01277,957,758 - 78,200,206 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11281,070,130 - 81,310,857 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1281,068,545 - 81,310,857 (+)Ensemblpanpan1.1panPan2
PTPRQ
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11522,771,653 - 23,017,694 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1522,825,348 - 23,013,762 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1523,195,305 - 23,441,460 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01523,131,808 - 23,378,520 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1523,132,778 - 23,375,811 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11522,709,249 - 22,955,886 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01522,768,982 - 23,015,356 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01523,008,878 - 23,255,710 (+)NCBIUU_Cfam_GSD_1.0
Ptprq
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494537,341,524 - 37,539,896 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366981,372,607 - 1,569,905 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366981,372,604 - 1,569,905 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTPRQ
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5100,787,027 - 101,033,334 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.15100,787,025 - 101,081,145 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25105,794,917 - 105,833,241 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PTPRQ
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11175,943,793 - 76,154,604 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1175,943,260 - 76,154,083 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037169,282,954 - 169,531,980 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000016590   ⟹   ENSHGLP00000016421
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475017,622,627 - 17,863,899 (-)Ensembl
RefSeq Acc Id: XM_021258496   ⟹   XP_021114155
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475017,621,520 - 17,863,902 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021114155 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000016421
RefSeq Acc Id: XP_021114155   ⟸   XM_021258496
- UniProtKB: G5C9J4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000016421   ⟸   ENSHGLT00000016590


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011762 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000016590 ENTREZGENE
Gene3D-CATH Immunoglobulins UniProtKB/TrEMBL
  Protein tyrosine phosphatase superfamily UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  PTP_cat UniProtKB/TrEMBL
  RTP_Phos/Ushers UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/TrEMBL
  Tyr_Pase_dom UniProtKB/TrEMBL
NCBI Gene Ptprq ENTREZGENE
PANTHER CYTOKINE RECEPTOR UniProtKB/TrEMBL
  PHOSPHATIDYLINOSITOL PHOSPHATASE PTPRQ UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
  Y_phosphatase UniProtKB/TrEMBL
PRINTS PRTYPHPHTASE UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_1 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_PTP UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
  PTPc UniProtKB/TrEMBL
  PTPc_motif UniProtKB/TrEMBL
Superfamily-SCOP (Phosphotyrosine protein) phosphatases II UniProtKB/TrEMBL
  Fibronectin type III UniProtKB/TrEMBL
UniProt A0AAX6T068_HETGA UniProtKB/TrEMBL
  G5C9J4 ENTREZGENE, UniProtKB/TrEMBL