Symbol:
Lsm1
Name:
LSM1 homolog, mRNA degradation associated
RGD ID:
18928110
Description:
ENCODES a protein that exhibits mRNA binding (ortholog); pre-mRNA binding (ortholog); INVOLVED IN histone mRNA catabolic process (ortholog); negative regulation of neuron differentiation (ortholog); neuron differentiation (ortholog); ASSOCIATED WITH cryptorchidism (ortholog); developmental and epileptic encephalopathy 11 (ortholog); Developmental Disabilities (ortholog); FOUND IN axon (ortholog); dendrite (ortholog); neuronal cell body (ortholog)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
LSM1 homolog, U6 small nuclear RNA associated; U6 snRNA-associated Sm-like protein LSm1
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Lsm1
LSM1 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 8 38,163,321 - 38,176,730 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 8 38,163,335 - 38,176,730 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 8 38,020,839 - 38,034,248 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 8 38,140,014 - 38,153,183 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 8 38,140,013 - 38,153,183 NCBI Celera 8 36,973,393 - 36,986,562 (-) NCBI Celera Cytogenetic Map 8 p11.23 NCBI HuRef 8 36,555,756 - 36,568,636 (-) NCBI HuRef CHM1_1 8 38,222,844 - 38,236,249 (-) NCBI CHM1_1 T2T-CHM13v2.0 8 38,440,300 - 38,453,709 (-) NCBI T2T-CHM13v2.0
Lsm1 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 8 26,275,326 - 26,294,003 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 8 26,275,316 - 26,294,003 (+) Ensembl GRCm39 Ensembl GRCm38 8 25,785,318 - 25,803,975 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 8 25,785,288 - 25,803,975 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 8 26,896,063 - 26,914,447 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 8 27,250,852 - 27,269,520 (+) NCBI MGSCv36 mm8 Celera 8 27,253,809 - 27,272,186 (+) NCBI Celera Cytogenetic Map 8 A2 NCBI cM Map 8 14.17 NCBI
Lsm1 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 16 72,980,075 - 72,991,581 (-) NCBI GRCr8 mRatBN7.2 16 66,277,345 - 66,288,852 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 16 66,277,345 - 66,288,852 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 16 71,555,983 - 71,567,493 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 16 74,962,293 - 74,973,803 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 16 70,202,187 - 70,213,697 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 16 71,046,475 - 71,057,883 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 16 71,046,475 - 71,057,883 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 16 70,711,151 - 70,722,559 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 16 70,652,831 - 70,663,995 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 16 70,653,556 - 70,663,907 (-) NCBI Celera 16 64,187,220 - 64,198,747 (-) NCBI Celera Cytogenetic Map 16 q12.4 NCBI
Lsm1 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955463 13,773,869 - 13,788,784 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955463 13,775,639 - 13,788,784 (-) NCBI ChiLan1.0 ChiLan1.0
LSM1 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 7 56,726,906 - 56,739,998 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 8 32,443,915 - 32,457,154 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 8 37,465,986 - 37,479,186 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 8 34,642,938 - 34,656,142 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 8 34,642,938 - 34,656,142 (-) Ensembl panpan1.1 panPan2
LSM1 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 16 27,304,257 - 27,315,389 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 16 27,304,198 - 27,315,233 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 16 27,821,271 - 27,832,688 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 16 29,203,163 - 29,214,621 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 16 29,203,401 - 29,214,465 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 16 27,425,471 - 27,436,928 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 16 28,002,718 - 28,014,129 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 16 28,041,959 - 28,053,408 (+) NCBI UU_Cfam_GSD_1.0
Lsm1 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024404943 49,909,516 - 49,915,246 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936710 1,545,790 - 1,552,394 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936710 1,546,027 - 1,551,685 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
LSM1 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 15 48,348,648 - 48,365,106 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 15 48,348,653 - 48,360,004 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 15 55,604,059 - 55,615,385 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
LSM1 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 8 36,184,928 - 36,198,689 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 8 36,182,380 - 36,198,704 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666052 5,791,244 - 5,805,004 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
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Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSHGLT00000007972 ⟹ ENSHGLP00000007884
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla_female_1.0 Ensembl NW_004624780 5,473,041 - 5,483,300 (+) Ensembl
Ensembl Acc Id:
ENSHGLT00000007973 ⟹ ENSHGLP00000007885
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla_female_1.0 Ensembl NW_004624780 5,473,366 - 5,483,014 (+) Ensembl
RefSeq Acc Id:
XM_004855367 ⟹ XP_004855424
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla 1.0 NW_004624780 5,473,425 - 5,483,584 (+) NCBI
RefSeq Acc Id:
XM_004855368 ⟹ XP_004855425
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla 1.0 NW_004624780 5,473,172 - 5,483,584 (+) NCBI
RefSeq Acc Id:
XM_021236812 ⟹ XP_021092471
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla 1.0 NW_004624780 5,473,172 - 5,483,584 (+) NCBI
RefSeq Acc Id:
XP_021092471 ⟸ XM_021236812
- Peptide Label:
isoform X2
- UniProtKB:
A0AAX6R597 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_004855425 ⟸ XM_004855368
- Peptide Label:
isoform X3
- UniProtKB:
G5B0A5 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_004855424 ⟸ XM_004855367
- Peptide Label:
isoform X1
- UniProtKB:
A0AAX6PP56 (UniProtKB/TrEMBL)
Ensembl Acc Id:
ENSHGLP00000007885 ⟸ ENSHGLT00000007973
Ensembl Acc Id:
ENSHGLP00000007884 ⟸ ENSHGLT00000007972
