Atp5pf (ATP synthase peripheral stalk subunit F6) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Atp5pf (ATP synthase peripheral stalk subunit F6) Heterocephalus glaber
Analyze
Symbol: Atp5pf
Name: ATP synthase peripheral stalk subunit F6
RGD ID: 18926991
Description: ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); protein-containing complex binding (ortholog); proton-transporting ATP synthase activity, rotational mechanism (ortholog); INVOLVED IN negative regulation of arachidonate secretion (ortholog); negative regulation of prostaglandin secretion (ortholog); positive regulation of blood pressure (ortholog); PARTICIPATES IN forkhead class A signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Alzheimer's Disease, Early-Onset, with Cerebral Amyloid Angiopathy (ortholog); essential hypertension (ortholog); FOUND IN cell surface (ortholog); extracellular space (ortholog); proton-transporting ATP synthase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP synthase, H+ transporting, mitochondrial Fo complex subunit F6; ATP synthase-coupling factor 6, mitochondrial; Atp5j
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474513,779,610 - 13,787,610 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474513,779,610 - 13,787,525 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Atp5pf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474513,779,610 - 13,787,610 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474513,779,610 - 13,787,525 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ATP5PF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382125,724,500 - 25,735,653 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2125,716,503 - 25,735,673 (-)EnsemblGRCh38hg38GRCh38
GRCh372127,096,811 - 27,107,964 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362126,018,662 - 26,029,836 (-)NCBINCBI36Build 36hg18NCBI36
Build 342126,018,662 - 26,029,836NCBI
Celera2112,280,206 - 12,291,380 (-)NCBICelera
Cytogenetic Map21q21.3NCBI
HuRef2112,499,927 - 12,511,003 (-)NCBIHuRef
CHM1_12126,657,444 - 26,668,586 (-)NCBICHM1_1
T2T-CHM13v2.02124,082,042 - 24,093,216 (-)NCBIT2T-CHM13v2.0
Atp5pf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391684,624,754 - 84,632,495 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1684,624,754 - 84,632,513 (-)EnsemblGRCm39 Ensembl
GRCm381684,827,871 - 84,835,857 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1684,827,866 - 84,835,625 (-)EnsemblGRCm38mm10GRCm38
MGSCv371684,828,116 - 84,835,819 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361684,710,463 - 84,718,166 (-)NCBIMGSCv36mm8
Celera1685,033,263 - 85,040,971 (-)NCBICelera
Cytogenetic Map16C3.3NCBI
cM Map1646.92NCBI
Atp5pf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81137,368,045 - 37,375,721 (-)NCBIGRCr8
mRatBN7.21123,881,594 - 23,889,581 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1123,881,592 - 23,889,119 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1132,587,838 - 32,594,892 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01125,288,245 - 25,295,299 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01124,476,951 - 24,484,006 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01124,286,806 - 24,294,419 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1124,286,787 - 24,294,179 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01127,914,805 - 27,918,237 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41124,316,748 - 24,323,800 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11124,316,747 - 24,323,800 (-)NCBI
Celera1123,720,789 - 23,727,843 (-)NCBICelera
Cytogenetic Map11q11NCBI
Atp5pf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540725,601,083 - 25,609,888 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540725,601,253 - 25,609,933 (-)NCBIChiLan1.0ChiLan1.0
ATP5PF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22221,919,475 - 21,930,738 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12116,776,655 - 16,787,928 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02112,169,567 - 12,180,717 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12125,526,252 - 25,537,363 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2125,519,441 - 25,537,363 (-)Ensemblpanpan1.1panPan2
ATP5PF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13121,207,080 - 21,212,220 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3121,200,337 - 21,215,975 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.03121,261,085 - 21,269,970 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3121,254,346 - 21,269,778 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13121,278,973 - 21,288,056 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03121,280,200 - 21,289,273 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03121,755,620 - 21,764,710 (-)NCBIUU_Cfam_GSD_1.0
Atp5pf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497121,756,733 - 21,764,531 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366401,916,711 - 1,924,823 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP5PF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13189,278,945 - 189,290,229 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113189,281,429 - 189,290,234 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213199,153,513 - 199,157,380 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP5PF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1266,539,014 - 66,550,186 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl266,538,864 - 66,550,046 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605087,004,210 - 87,016,075 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004842226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01025036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000013289   ⟹   ENSHGLP00000013151
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474513,779,610 - 13,787,610 (-)Ensembl
RefSeq Acc Id: XM_004842226   ⟹   XP_004842283
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474513,779,610 - 13,787,525 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004842283 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000013151
RefSeq Acc Id: XP_004842283   ⟸   XM_004842226
- UniProtKB: A0AAX6P2I5 (UniProtKB/TrEMBL),   G5BQQ2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000013151   ⟸   ENSHGLT00000013289


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009401 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000013289 ENTREZGENE
Gene3D-CATH Mitochondrial ATP synthase-coupling factor 6 UniProtKB/TrEMBL
InterPro ATP_synth_f6_mt UniProtKB/TrEMBL
  ATP_synth_f6_sf_mt UniProtKB/TrEMBL
NCBI Gene Atp5pf ENTREZGENE
PANTHER ATP SYNTHASE COUPLING FACTOR 6, MITOCHONDRIAL UniProtKB/TrEMBL
  ATP SYNTHASE-COUPLING FACTOR 6, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam ATP-synt_F6 UniProtKB/TrEMBL
PIRSF ATP_synthase_coupling_factor_6 UniProtKB/TrEMBL
Superfamily-SCOP Mitochondrial ATP synthase coupling factor 6 UniProtKB/TrEMBL
UniProt A0AAX6P2I5 ENTREZGENE, UniProtKB/TrEMBL
  G5BQQ2 ENTREZGENE, UniProtKB/TrEMBL