Wrnip1 (WRN helicase interacting protein 1) - Rat Genome Database

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Gene: Wrnip1 (WRN helicase interacting protein 1) Heterocephalus glaber
Analyze
Symbol: Wrnip1
Name: WRN helicase interacting protein 1
RGD ID: 18925608
Description: ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); identical protein binding (ortholog); INVOLVED IN DNA synthesis involved in DNA repair (ortholog); regulation of DNA-templated DNA replication initiation (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN chromosome, telomeric region (ortholog); nucleus (ortholog); perinuclear region of cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATPase WRNIP1; Werner helicase interacting protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475622,034,137 - 22,054,253 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475622,034,252 - 22,054,236 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Wrnip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475622,034,137 - 22,054,253 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475622,034,252 - 22,054,236 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
WRNIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3862,765,393 - 2,786,952 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl62,765,393 - 2,786,952 (+)EnsemblGRCh38hg38GRCh38
GRCh3762,765,627 - 2,787,186 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3662,710,665 - 2,730,978 (+)NCBINCBI36Build 36hg18NCBI36
Build 3462,710,664 - 2,730,977NCBI
Celera63,994,624 - 4,014,940 (+)NCBICelera
Cytogenetic Map6p25.2NCBI
HuRef62,638,804 - 2,659,415 (+)NCBIHuRef
CHM1_162,768,240 - 2,788,553 (+)NCBICHM1_1
T2T-CHM13v2.062,631,255 - 2,653,114 (+)NCBIT2T-CHM13v2.0
Wrnip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391332,986,013 - 33,006,593 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1332,986,021 - 33,006,592 (+)EnsemblGRCm39 Ensembl
GRCm381332,802,030 - 32,822,610 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1332,802,038 - 32,822,609 (+)EnsemblGRCm38mm10GRCm38
MGSCv371332,893,899 - 32,914,479 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361332,809,503 - 32,830,074 (+)NCBIMGSCv36mm8
Celera1333,010,944 - 33,032,851 (+)NCBICelera
Cytogenetic Map13A3.2NCBI
cM Map1313.74NCBI
Wrnip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81731,830,159 - 31,850,408 (-)NCBIGRCr8
mRatBN7.21731,621,410 - 31,641,659 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1731,621,411 - 31,641,659 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1731,456,553 - 31,476,744 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01733,060,327 - 33,080,518 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01731,452,320 - 31,472,509 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01732,933,395 - 32,953,641 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1732,933,396 - 32,953,641 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01734,825,601 - 34,845,847 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41737,982,094 - 38,002,342 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11737,984,934 - 38,005,183 (-)NCBI
Celera1731,183,744 - 31,203,992 (-)NCBICelera
Cytogenetic Map17p12NCBI
Wrnip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546510,574,551 - 10,593,780 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546510,574,601 - 10,594,570 (-)NCBIChiLan1.0ChiLan1.0
WRNIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2517,391,235 - 17,412,245 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1613,383,335 - 13,403,453 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v062,587,170 - 2,608,179 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.162,688,066 - 2,711,062 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl62,691,235 - 2,711,062 (+)Ensemblpanpan1.1panPan2
WRNIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1353,103,507 - 3,127,657 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl353,103,418 - 3,127,504 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha353,110,859 - 3,135,627 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0353,158,467 - 3,183,106 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl353,158,020 - 3,183,103 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1353,034,380 - 3,058,999 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0353,056,962 - 3,081,532 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0354,389,321 - 4,413,936 (+)NCBIUU_Cfam_GSD_1.0
Wrnip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494622,746,687 - 22,767,469 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366333,853,058 - 3,874,121 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366333,853,201 - 3,873,983 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WRNIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl71,656,984 - 1,667,879 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.171,656,952 - 1,667,885 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.271,752,826 - 1,766,919 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WRNIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11769,366,565 - 69,386,950 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1769,366,389 - 69,386,932 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660442,711,607 - 2,732,063 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000020055   ⟹   ENSHGLP00000019857
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475622,034,137 - 22,054,253 (-)Ensembl
RefSeq Acc Id: XM_004847781   ⟹   XP_004847838
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475622,034,522 - 22,054,236 (-)NCBI
RefSeq Acc Id: XM_004847782   ⟹   XP_004847839
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475622,034,522 - 22,054,236 (-)NCBI
RefSeq Acc Id: XM_021260750   ⟹   XP_021116409
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475622,034,252 - 22,054,236 (-)NCBI
RefSeq Acc Id: XM_021260751   ⟹   XP_021116410
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475622,034,252 - 22,054,236 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004847838 (Get FASTA)   NCBI Sequence Viewer  
  XP_004847839 (Get FASTA)   NCBI Sequence Viewer  
  XP_021116409 (Get FASTA)   NCBI Sequence Viewer  
  XP_021116410 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000019857
Reference Protein Sequences
RefSeq Acc Id: XP_021116410   ⟸   XM_021260751
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021116409   ⟸   XM_021260750
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004847839   ⟸   XM_004847782
- Peptide Label: isoform X4
RefSeq Acc Id: XP_004847838   ⟸   XM_004847781
- Peptide Label: isoform X3
RefSeq Acc Id: ENSHGLP00000019857   ⟸   ENSHGLT00000020055


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014216 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000020055 ENTREZGENE
NCBI Gene Wrnip1 ENTREZGENE