WRNIP1 (WRN helicase interacting protein 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Pathways
Gene: WRNIP1 (WRN helicase interacting protein 1) Sus scrofa
Analyze
Symbol: WRNIP1
Name: WRN helicase interacting protein 1
RGD ID: 14079211
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); DNA binding (inferred); INVOLVED IN DNA damage response (inferred); DNA duplex unwinding (inferred); DNA repair (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN chromosome, telomeric region (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATPase WRNIP1; Werner helicase interacting protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl71,656,984 - 1,667,879 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.171,656,952 - 1,667,885 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.271,752,826 - 1,766,919 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463  


Genomics

Comparative Map Data
WRNIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl71,656,984 - 1,667,879 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.171,656,952 - 1,667,885 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.271,752,826 - 1,766,919 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WRNIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3862,765,393 - 2,786,952 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl62,765,393 - 2,786,952 (+)EnsemblGRCh38hg38GRCh38
GRCh3762,765,627 - 2,787,186 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3662,710,665 - 2,730,978 (+)NCBINCBI36Build 36hg18NCBI36
Build 3462,710,664 - 2,730,977NCBI
Celera63,994,624 - 4,014,940 (+)NCBICelera
Cytogenetic Map6p25.2NCBI
HuRef62,638,804 - 2,659,415 (+)NCBIHuRef
CHM1_162,768,240 - 2,788,553 (+)NCBICHM1_1
T2T-CHM13v2.062,631,255 - 2,653,114 (+)NCBIT2T-CHM13v2.0
Wrnip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391332,986,013 - 33,006,593 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1332,986,021 - 33,006,592 (+)EnsemblGRCm39 Ensembl
GRCm381332,802,030 - 32,822,610 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1332,802,038 - 32,822,609 (+)EnsemblGRCm38mm10GRCm38
MGSCv371332,893,899 - 32,914,479 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361332,809,503 - 32,830,074 (+)NCBIMGSCv36mm8
Celera1333,010,944 - 33,032,851 (+)NCBICelera
Cytogenetic Map13A3.2NCBI
cM Map1313.74NCBI
Wrnip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21731,621,410 - 31,641,659 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1731,621,411 - 31,641,659 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1731,456,553 - 31,476,744 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01733,060,327 - 33,080,518 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01731,452,320 - 31,472,509 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01732,933,395 - 32,953,641 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1732,933,396 - 32,953,641 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01734,825,601 - 34,845,847 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41737,982,094 - 38,002,342 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11737,984,934 - 38,005,183 (-)NCBI
Celera1731,183,744 - 31,203,992 (-)NCBICelera
Cytogenetic Map17p12NCBI
Wrnip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546510,574,551 - 10,593,780 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546510,574,601 - 10,594,570 (-)NCBIChiLan1.0ChiLan1.0
WRNIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1613,383,335 - 13,403,453 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v062,587,170 - 2,608,179 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.162,688,066 - 2,711,062 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl62,691,235 - 2,711,062 (+)Ensemblpanpan1.1panPan2
WRNIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1353,103,507 - 3,127,657 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl353,103,418 - 3,127,504 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha353,110,859 - 3,135,627 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0353,158,467 - 3,183,106 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl353,158,020 - 3,183,103 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1353,034,380 - 3,058,999 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0353,056,962 - 3,081,532 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0354,389,321 - 4,413,936 (+)NCBIUU_Cfam_GSD_1.0
Wrnip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494622,746,687 - 22,767,469 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366333,853,058 - 3,874,121 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049366333,853,201 - 3,873,983 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WRNIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11769,366,565 - 69,386,950 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1769,366,389 - 69,386,932 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660442,711,607 - 2,732,063 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wrnip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475622,034,137 - 22,054,253 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475622,034,252 - 22,054,236 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in WRNIP1
404 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 1 3 1
Low 10 4 3 3 1 20 2 2 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000001102   ⟹   ENSSSCP00000001080
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl71,656,984 - 1,667,879 (+)Ensembl
RefSeq Acc Id: XM_021100108   ⟹   XP_020955767
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.171,656,952 - 1,667,885 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020955767 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_020955767   ⟸   XM_021100108
- UniProtKB: A0A4X1SRW5 (UniProtKB/TrEMBL),   F1RWX5 (UniProtKB/TrEMBL),   A0A8D1W9X5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000001080   ⟸   ENSSSCT00000001102
Protein Domains
AAA+ ATPase   UBZ4-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000001010 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025062983 UniProtKB/TrEMBL
  ENSSSCG00030015008 UniProtKB/TrEMBL
  ENSSSCG00035041502 UniProtKB/TrEMBL
  ENSSSCG00040027945 UniProtKB/TrEMBL
  ENSSSCG00045011813 UniProtKB/TrEMBL
  ENSSSCG00050065779 UniProtKB/TrEMBL
  ENSSSCG00055018426 UniProtKB/TrEMBL
  ENSSSCG00060061495 UniProtKB/TrEMBL
  ENSSSCG00065039287 UniProtKB/TrEMBL
  ENSSSCG00070003351 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000001080 ENTREZGENE
  ENSSSCP00000001080.3 UniProtKB/TrEMBL
  ENSSSCP00025037543.1 UniProtKB/TrEMBL
  ENSSSCP00030009259.1 UniProtKB/TrEMBL
  ENSSSCP00035022188.1 UniProtKB/TrEMBL
  ENSSSCP00040015611.1 UniProtKB/TrEMBL
  ENSSSCP00045013790.1 UniProtKB/TrEMBL
  ENSSSCP00050038455.1 UniProtKB/TrEMBL
  ENSSSCP00055028863.1 UniProtKB/TrEMBL
  ENSSSCP00060036383.1 UniProtKB/TrEMBL
  ENSSSCP00065023352.1 UniProtKB/TrEMBL
  ENSSSCP00070005149.1 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000001102 ENTREZGENE
  ENSSSCT00000001102.5 UniProtKB/TrEMBL
  ENSSSCT00025086281.1 UniProtKB/TrEMBL
  ENSSSCT00030020726.1 UniProtKB/TrEMBL
  ENSSSCT00035055153.1 UniProtKB/TrEMBL
  ENSSSCT00040037490.1 UniProtKB/TrEMBL
  ENSSSCT00045020068.1 UniProtKB/TrEMBL
  ENSSSCT00050089583.1 UniProtKB/TrEMBL
  ENSSSCT00055036341.1 UniProtKB/TrEMBL
  ENSSSCT00060083932.1 UniProtKB/TrEMBL
  ENSSSCT00065053710.1 UniProtKB/TrEMBL
  ENSSSCT00070006321.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.8.60 UniProtKB/TrEMBL
  1.20.272.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
  DNA polymerase III clamp loader subunits, C-terminal domain UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  AAA_assoc_2 UniProtKB/TrEMBL
  ATPase_AAA_core UniProtKB/TrEMBL
  DNA_pol3_clamp-load_cplx_C UniProtKB/TrEMBL
  MgsA_C UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Znf-WRNIP1_ubi UniProtKB/TrEMBL
  Znf_Rad18_put UniProtKB/TrEMBL
NCBI Gene WRNIP1 ENTREZGENE
PANTHER ATPASE WRNIP1 UniProtKB/TrEMBL
  WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER UniProtKB/TrEMBL
Pfam AAA UniProtKB/TrEMBL
  AAA_assoc_2 UniProtKB/TrEMBL
  MgsA_C UniProtKB/TrEMBL
  zf-WRNIP1_ubi UniProtKB/TrEMBL
PROSITE ZF_UBZ4 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
  ZnF_Rad18 UniProtKB/TrEMBL
Superfamily-SCOP SSF48019 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A4X1SRW5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0ZQL9_PIG UniProtKB/TrEMBL
  A0A8D1W9X5 ENTREZGENE, UniProtKB/TrEMBL
  F1RWX5 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:104096 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-16 WRNIP1  WRN helicase interacting protein 1    Werner helicase interacting protein 1  Symbol and/or name change 5135510 APPROVED