Ddr1 (discoidin domain receptor tyrosine kinase 1) - Rat Genome Database

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Gene: Ddr1 (discoidin domain receptor tyrosine kinase 1) Heterocephalus glaber
Analyze
Symbol: Ddr1
Name: discoidin domain receptor tyrosine kinase 1
RGD ID: 18924916
Description: ENCODES a protein that exhibits ATP binding (inferred); boss receptor activity (inferred); brain-derived neurotrophic factor receptor activity (inferred); INVOLVED IN animal organ regeneration (ortholog); axon development (ortholog); branching involved in mammary gland duct morphogenesis (ortholog); ASSOCIATED WITH adenocarcinoma (ortholog); alcoholic hepatitis (ortholog); alcoholic liver cirrhosis (ortholog); FOUND IN basolateral plasma membrane (ortholog); brush border (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Epithelial discoidin domain-containing receptor 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,880,496 - 24,896,995 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475424,881,439 - 24,905,633 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
animal organ regeneration  (ISO)
axon development  (ISO)
brain-derived neurotrophic factor receptor signaling pathway  (IEA)
branching involved in mammary gland duct morphogenesis  (ISO)
cell population proliferation  (ISO)
cell surface receptor protein tyrosine kinase signaling pathway  (IEA)
chromatin remodeling  (IEA)
collagen-activated tyrosine kinase receptor signaling pathway  (IEA,ISO)
ear development  (ISO)
embryo implantation  (ISO)
ephrin receptor signaling pathway  (IEA)
epidermal growth factor receptor signaling pathway  (IEA)
fibroblast growth factor receptor signaling pathway  (IEA)
hepatocyte growth factor receptor signaling pathway  (IEA)
insulin receptor signaling pathway  (IEA)
insulin-like growth factor receptor signaling pathway  (IEA)
Kit signaling pathway  (IEA)
macrophage colony-stimulating factor signaling pathway  (IEA)
mammary gland alveolus development  (ISO)
negative regulation of cell population proliferation  (ISO)
neuron projection extension  (ISO)
peptidyl-tyrosine autophosphorylation  (ISO)
peptidyl-tyrosine phosphorylation  (ISO)
platelet-derived growth factor receptor-alpha signaling pathway  (IEA)
platelet-derived growth factor receptor-beta signaling pathway  (IEA)
positive regulation of neuron projection development  (IEA)
positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction  (IEA)
protein autophosphorylation  (ISO)
regulation of cell growth  (ISO)
regulation of cell-matrix adhesion  (ISO)
regulation of extracellular matrix disassembly  (ISO)
skin development  (ISO)
smooth muscle cell migration  (ISO)
smooth muscle cell-matrix adhesion  (ISO)
vascular endothelial growth factor receptor-1 signaling pathway  (IEA)
vascular endothelial growth factor signaling pathway  (IEA)
wound healing, spreading of cells  (ISO)

Cellular Component

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ddr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,880,496 - 24,896,995 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475424,881,439 - 24,905,633 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
DDR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38630,880,970 - 30,900,156 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl630,876,421 - 30,900,156 (+)EnsemblGRCh38hg38GRCh38
GRCh37630,848,747 - 30,867,933 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36630,959,840 - 30,975,912 (+)NCBINCBI36Build 36hg18NCBI36
Build 34630,964,144 - 30,975,910NCBI
Celera632,449,961 - 32,466,039 (+)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef630,652,534 - 30,668,027 (+)NCBIHuRef
CHM1_1630,854,040 - 30,870,114 (+)NCBICHM1_1
T2T-CHM13v2.0630,745,627 - 30,764,828 (+)NCBIT2T-CHM13v2.0
Ddr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,992,459 - 36,015,633 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1735,992,459 - 36,015,513 (-)EnsemblGRCm39 Ensembl
GRCm381735,681,567 - 35,704,741 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,681,567 - 35,704,621 (-)EnsemblGRCm38mm10GRCm38
MGSCv371735,818,512 - 35,841,084 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361735,289,620 - 35,312,040 (-)NCBIMGSCv36mm8
Celera1739,195,716 - 39,218,204 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.7NCBI
Ddr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8203,047,269 - 3,069,277 (+)NCBIGRCr8
mRatBN7.2203,042,494 - 3,064,442 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,044,320 - 3,064,468 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx203,095,590 - 3,115,117 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0203,100,564 - 3,120,089 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0203,126,882 - 3,146,313 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0203,553,430 - 3,574,959 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl203,552,929 - 3,575,780 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0205,652,154 - 5,671,944 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4203,194,265 - 3,214,611 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1203,202,454 - 3,214,838 (+)NCBI
Celera20470,029 - 489,383 (+)NCBICelera
Cytogenetic Map20p12NCBI
Ddr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955583820,931 - 841,654 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955583820,893 - 838,515 (+)NCBIChiLan1.0ChiLan1.0
DDR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2545,441,672 - 45,460,866 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1641,404,508 - 41,423,689 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0630,625,871 - 30,645,066 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1631,494,265 - 31,513,455 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl631,496,047 - 31,513,455 (+)Ensemblpanpan1.1panPan2
DDR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.112653,800 - 671,190 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl12653,807 - 670,543 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha12791,915 - 809,197 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.012798,385 - 815,656 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl12798,388 - 816,365 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.112657,734 - 674,983 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.012726,216 - 743,419 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.012794,051 - 811,286 (+)NCBIUU_Cfam_GSD_1.0
Ddr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494634,154,415 - 34,173,540 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936837523,266 - 538,833 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936837523,227 - 538,799 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DDR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,373,845 - 23,391,584 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,371,358 - 23,391,585 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,096,042 - 27,113,809 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DDR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11741,564,271 - 41,583,404 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1741,564,992 - 41,575,682 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604430,581,668 - 30,601,055 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004847058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013072899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013072901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013072902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013072903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013072904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013072907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021260149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021260150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021260151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021260152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021260153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021260154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01035215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01003721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH173151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000024220   ⟹   ENSHGLP00000024002
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475424,880,496 - 24,896,995 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000024221   ⟹   ENSHGLP00000024003
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475424,880,496 - 24,892,643 (-)Ensembl
RefSeq Acc Id: XM_004847058   ⟹   XP_004847115
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475424,881,439 - 24,894,559 (-)NCBI
RefSeq Acc Id: XM_013072899   ⟹   XP_012928353
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475424,881,439 - 24,895,252 (-)NCBI
RefSeq Acc Id: XM_013072901   ⟹   XP_012928355
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475424,881,439 - 24,895,653 (-)NCBI
RefSeq Acc Id: XM_013072902   ⟹   XP_012928356
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475424,881,439 - 24,896,594 (-)NCBI
RefSeq Acc Id: XM_013072903   ⟹   XP_012928357
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475424,881,439 - 24,895,323 (-)NCBI
RefSeq Acc Id: XM_013072904   ⟹   XP_012928358
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475424,881,439 - 24,895,656 (-)NCBI
RefSeq Acc Id: XM_013072907   ⟹   XP_012928361
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475424,881,439 - 24,895,579 (-)NCBI
RefSeq Acc Id: XM_021260149   ⟹   XP_021115808
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475424,881,439 - 24,891,678 (-)NCBI
RefSeq Acc Id: XM_021260150   ⟹   XP_021115809
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475424,881,439 - 24,891,678 (-)NCBI
RefSeq Acc Id: XM_021260151   ⟹   XP_021115810
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475424,881,439 - 24,895,579 (-)NCBI
RefSeq Acc Id: XM_021260152   ⟹   XP_021115811
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475424,881,439 - 24,894,831 (-)NCBI
RefSeq Acc Id: XM_021260153   ⟹   XP_021115812
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475424,881,439 - 24,905,633 (-)NCBI
RefSeq Acc Id: XM_021260154   ⟹   XP_021115813
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475424,884,127 - 24,891,678 (-)NCBI
RefSeq Acc Id: XP_021115812   ⟸   XM_021260153
- Peptide Label: isoform X3
- UniProtKB: A0A0P6J8N1 (UniProtKB/TrEMBL),   G5C3C6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012928356   ⟸   XM_013072902
- Peptide Label: isoform X3
- UniProtKB: A0A0P6J8N1 (UniProtKB/TrEMBL),   G5C3C6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012928358   ⟸   XM_013072904
- Peptide Label: isoform X3
- UniProtKB: A0A0P6J8N1 (UniProtKB/TrEMBL),   G5C3C6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012928355   ⟸   XM_013072901
- Peptide Label: isoform X3
- UniProtKB: A0A0P6J8N1 (UniProtKB/TrEMBL),   G5C3C6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012928361   ⟸   XM_013072907
- Peptide Label: isoform X3
- UniProtKB: A0A0P6J8N1 (UniProtKB/TrEMBL),   G5C3C6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021115810   ⟸   XM_021260151
- Peptide Label: isoform X3
- UniProtKB: A0A0P6J8N1 (UniProtKB/TrEMBL),   G5C3C6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012928357   ⟸   XM_013072903
- Peptide Label: isoform X3
- UniProtKB: A0A0P6J8N1 (UniProtKB/TrEMBL),   G5C3C6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012928353   ⟸   XM_013072899
- Peptide Label: isoform X3
- UniProtKB: A0A0P6J8N1 (UniProtKB/TrEMBL),   G5C3C6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021115811   ⟸   XM_021260152
- Peptide Label: isoform X3
- UniProtKB: A0A0P6J8N1 (UniProtKB/TrEMBL),   G5C3C6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004847115   ⟸   XM_004847058
- Peptide Label: isoform X3
- UniProtKB: A0A0P6J8N1 (UniProtKB/TrEMBL),   G5C3C6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021115808   ⟸   XM_021260149
- Peptide Label: isoform X1
- UniProtKB: G5C3C6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021115809   ⟸   XM_021260150
- Peptide Label: isoform X2
- UniProtKB: G5C3C6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021115813   ⟸   XM_021260154
- Peptide Label: isoform X4
Ensembl Acc Id: ENSHGLP00000024002   ⟸   ENSHGLT00000024220
Ensembl Acc Id: ENSHGLP00000024003   ⟸   ENSHGLT00000024221


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000017106 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000024220 ENTREZGENE
  ENSHGLT00000024221 ENTREZGENE
Gene3D-CATH 2.60.120.1190 UniProtKB/TrEMBL
  Galactose-binding domain-like UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro DDR1-2_DS-like UniProtKB/TrEMBL
  FA58C UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  RTK UniProtKB/TrEMBL
  Ser-Thr/Tyr_kinase_cat_dom UniProtKB/TrEMBL
  Tyr_kinase_AS UniProtKB/TrEMBL
  Tyr_kinase_cat_dom UniProtKB/TrEMBL
  Tyr_kinase_rcpt_2_CS UniProtKB/TrEMBL
KEGG Report hgl:101699683 UniProtKB/TrEMBL
NCBI Gene Ddr1 ENTREZGENE
PANTHER EPITHELIAL DISCOIDIN DOMAIN-CONTAINING RECEPTOR 1 UniProtKB/TrEMBL
  TYROSINE-PROTEIN KINASE RECEPTOR UniProtKB/TrEMBL
Pfam DDR1-2_DS-like UniProtKB/TrEMBL
  F5_F8_type_C UniProtKB/TrEMBL
  PK_Tyr_Ser-Thr UniProtKB/TrEMBL
PRINTS TYRKINASE UniProtKB/TrEMBL
PROSITE FA58C_1 UniProtKB/TrEMBL
  FA58C_2 UniProtKB/TrEMBL
  FA58C_3 UniProtKB/TrEMBL
  PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_TYR UniProtKB/TrEMBL
  RECEPTOR_TYR_KIN_II UniProtKB/TrEMBL
SMART FA58C UniProtKB/TrEMBL
  TyrKc UniProtKB/TrEMBL
Superfamily-SCOP SSF49785 UniProtKB/TrEMBL
  SSF56112 UniProtKB/TrEMBL
UniProt A0A0P6J8N1 ENTREZGENE, UniProtKB/TrEMBL
  G5C3C6 ENTREZGENE, UniProtKB/TrEMBL