Nup58 (nucleoporin 58) - Rat Genome Database

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Gene: Nup58 (nucleoporin 58) Heterocephalus glaber
Analyze
Symbol: Nup58
Name: nucleoporin 58
RGD ID: 18921268
Description: ENCODES a protein that exhibits identical protein binding (ortholog); nuclear localization sequence binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN regulation of protein import into nucleus (ortholog); PARTICIPATES IN mRNA nuclear export pathway; FOUND IN nuclear envelope (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nucleoporin p58/p45; NUPL1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477613,149,019 - 13,219,370 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477613,149,918 - 13,219,571 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Nup58
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477613,149,019 - 13,219,370 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477613,149,918 - 13,219,571 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
NUP58
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381325,301,625 - 25,349,800 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1325,301,524 - 25,365,390 (+)EnsemblGRCh38hg38GRCh38
GRCh371325,875,763 - 25,916,559 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361324,773,666 - 24,814,561 (+)NCBINCBI36Build 36hg18NCBI36
Build 341324,773,665 - 24,814,561NCBI
Celera136,939,918 - 6,980,809 (+)NCBICelera
Cytogenetic Map13q12.13NCBI
HuRef136,690,062 - 6,730,691 (+)NCBIHuRef
CHM1_11325,843,885 - 25,884,759 (+)NCBICHM1_1
T2T-CHM13v2.01324,511,318 - 24,559,471 (+)NCBIT2T-CHM13v2.0
Nup58
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391460,442,733 - 60,488,951 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1460,442,731 - 60,488,956 (-)EnsemblGRCm39 Ensembl
GRCm39 Ensembl1460,422,061 - 60,488,880 (-)EnsemblGRCm39 Ensembl
GRCm381460,205,284 - 60,251,479 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1460,205,282 - 60,251,507 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl1460,184,612 - 60,251,431 (-)EnsemblGRCm38mm10GRCm38
MGSCv371460,838,305 - 60,870,215 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361459,173,578 - 59,205,488 (-)NCBIMGSCv36mm8
Celera1458,009,157 - 58,041,065 (-)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1431.62NCBI
Nup58
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81538,534,340 - 38,583,959 (-)NCBIGRCr8
mRatBN7.21534,358,170 - 34,407,160 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1534,358,277 - 34,407,060 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1536,229,670 - 36,261,919 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01537,380,301 - 37,412,551 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01535,835,892 - 35,868,141 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01540,496,754 - 40,545,933 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1540,513,342 - 40,545,824 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01544,308,883 - 44,358,084 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41539,317,826 - 39,350,075 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11539,332,153 - 39,365,788 (-)NCBI
Celera1534,076,434 - 34,108,683 (-)NCBICelera
Cytogenetic Map15p12NCBI
Nup58
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554974,762,316 - 4,830,547 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554974,762,316 - 4,830,320 (+)NCBIChiLan1.0ChiLan1.0
NUP58
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21424,896,010 - 24,946,435 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11316,006,071 - 16,056,478 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0136,593,682 - 6,634,397 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11324,944,910 - 24,985,657 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1324,948,081 - 24,992,854 (+)Ensemblpanpan1.1panPan2
NUP58
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12514,106,135 - 14,158,518 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2514,106,187 - 14,158,464 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2514,185,956 - 14,238,412 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02514,236,442 - 14,289,531 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2514,236,494 - 14,289,555 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12514,118,744 - 14,171,646 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02514,120,919 - 14,173,588 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02514,169,367 - 14,222,519 (-)NCBIUU_Cfam_GSD_1.0
Nup58
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945116,363,560 - 116,413,033 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936688985,746 - 1,025,407 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936688986,037 - 1,025,351 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUP58
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl113,225,268 - 3,259,427 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1113,225,185 - 3,266,163 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2112,493,997 - 2,499,480 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NUP58
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.134,695,071 - 4,743,659 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl34,695,137 - 4,737,195 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605739,706,724 - 39,748,086 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000021811   ⟹   ENSHGLP00000021601
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477613,149,019 - 13,219,370 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000021812   ⟹   ENSHGLP00000021602
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477613,176,844 - 13,219,370 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000021813   ⟹   ENSHGLP00000021603
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462477613,180,552 - 13,219,370 (-)Ensembl
RefSeq Acc Id: XM_004854828   ⟹   XP_004854885
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477613,178,613 - 13,219,571 (-)NCBI
RefSeq Acc Id: XM_013075871   ⟹   XP_012931325
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477613,178,613 - 13,219,571 (-)NCBI
RefSeq Acc Id: XM_021236337   ⟹   XP_021091996
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477613,178,613 - 13,219,093 (-)NCBI
RefSeq Acc Id: XM_021236338   ⟹   XP_021091997
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477613,149,918 - 13,219,571 (-)NCBI
RefSeq Acc Id: XM_021236339   ⟹   XP_021091998
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462477613,149,918 - 13,219,571 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021091998   ⟸   XM_021236339
- Peptide Label: isoform X5
- UniProtKB: A0A0P6IYT5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021091997   ⟸   XM_021236338
- Peptide Label: isoform X3
- UniProtKB: A0A0P6IYT5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012931325   ⟸   XM_013075871
- Peptide Label: isoform X4
- UniProtKB: A0A0P6IYT5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004854885   ⟸   XM_004854828
- Peptide Label: isoform X1
- UniProtKB: A0A0P6IYT5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021091996   ⟸   XM_021236337
- Peptide Label: isoform X2
- UniProtKB: A0A0P6IYT5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000021603   ⟸   ENSHGLT00000021813
RefSeq Acc Id: ENSHGLP00000021602   ⟸   ENSHGLT00000021812
RefSeq Acc Id: ENSHGLP00000021601   ⟸   ENSHGLT00000021811


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015434 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100004161 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000021811 ENTREZGENE
  ENSHGLT00000021812 ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLT00100067302 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.1350 UniProtKB/TrEMBL
InterPro NUP58/p45/49 UniProtKB/TrEMBL
NCBI Gene Nup58 ENTREZGENE
PANTHER NUCLEOPORIN P58/P45 UniProtKB/TrEMBL
  NUCLEOPORIN P58/P45 NUCLEOPORIN-LIKE PROTEIN 1 UniProtKB/TrEMBL
Pfam Nucleoporin_FG2 UniProtKB/TrEMBL
UniProt A0A0P6IYT5 ENTREZGENE, UniProtKB/TrEMBL