St6gal1 (ST6 beta-galactoside alpha-2,6-sialyltransferase 1) - Rat Genome Database

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Gene: St6gal1 (ST6 beta-galactoside alpha-2,6-sialyltransferase 1) Heterocephalus glaber
Analyze
Symbol: St6gal1
Name: ST6 beta-galactoside alpha-2,6-sialyltransferase 1
RGD ID: 18921100
Description: ENCODES a protein that exhibits sialyltransferase activity (ortholog); INVOLVED IN negative regulation of chemotaxis (ortholog); negative regulation of macrophage apoptotic process (ortholog); positive regulation of mononuclear cell proliferation (ortholog); ASSOCIATED WITH 3MC syndrome 1 (ortholog); alcohol use disorder (ortholog); allergic contact dermatitis (ortholog); FOUND IN Golgi medial cisterna (ortholog); Golgi trans cisterna (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Beta-galactoside alpha-2,6-sialyltransferase 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473069,745,865 - 69,845,367 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473069,746,207 - 69,871,020 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:22301074  


Genomics

Comparative Map Data
St6gal1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473069,745,865 - 69,845,367 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473069,746,207 - 69,871,020 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ST6GAL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383186,930,526 - 187,078,553 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3186,930,325 - 187,078,553 (+)EnsemblGRCh38hg38GRCh38
GRCh373186,648,315 - 186,796,341 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363188,131,210 - 188,279,035 (+)NCBINCBI36Build 36hg18NCBI36
Celera3185,080,508 - 185,228,493 (+)NCBICelera
Cytogenetic Map3q27.3NCBI
HuRef3184,053,004 - 184,200,845 (+)NCBIHuRef
CHM1_13186,611,743 - 186,760,043 (+)NCBICHM1_1
T2T-CHM13v2.03189,748,335 - 189,896,308 (+)NCBIT2T-CHM13v2.0
St6gal1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391623,043,478 - 23,179,100 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1623,043,490 - 23,179,100 (+)EnsemblGRCm39 Ensembl
GRCm381623,224,729 - 23,360,350 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1623,224,740 - 23,360,350 (+)EnsemblGRCm38mm10GRCm38
MGSCv371623,224,835 - 23,360,421 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361623,140,096 - 23,275,682 (+)NCBIMGSCv36mm8
Celera1623,783,051 - 23,918,950 (+)NCBICelera
Cytogenetic Map16B1NCBI
cM Map1614.03NCBI
St6gal1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81191,031,481 - 91,158,111 (-)NCBIGRCr8
mRatBN7.21177,526,837 - 77,653,474 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1177,526,837 - 77,653,310 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1186,277,327 - 86,319,671 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01178,916,068 - 78,958,433 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01177,991,611 - 78,033,954 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01180,927,601 - 80,981,424 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1180,927,601 - 80,981,422 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01179,754,201 - 79,808,024 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41179,723,269 - 79,765,645 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11179,780,860 - 79,789,781 (-)NCBI
Celera1176,402,694 - 76,445,042 (-)NCBICelera
Cytogenetic Map11q23NCBI
St6gal1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542020,709,301 - 20,801,167 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542020,708,890 - 20,801,167 (-)NCBIChiLan1.0ChiLan1.0
ST6GAL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22184,799,471 - 184,948,596 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13184,804,185 - 184,953,313 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03183,955,462 - 184,104,537 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13192,421,036 - 192,569,970 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3192,488,087 - 192,569,970 (+)Ensemblpanpan1.1panPan2
ST6GAL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13419,497,577 - 19,589,125 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3419,497,922 - 19,586,427 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3423,553,294 - 23,675,456 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03419,379,150 - 19,501,792 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3419,380,090 - 19,501,787 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13419,410,367 - 19,531,590 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03419,410,079 - 19,531,772 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03419,643,504 - 19,764,764 (+)NCBIUU_Cfam_GSD_1.0
St6gal1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602116,874,836 - 117,015,302 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365782,966,694 - 3,003,970 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365782,966,690 - 3,107,237 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ST6GAL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13124,791,751 - 124,837,841 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113124,699,622 - 124,837,847 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ST6GAL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11581,205,121 - 81,346,089 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1581,239,631 - 81,349,173 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604154,697,038 - 54,836,111 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000027223   ⟹   ENSHGLP00000026984
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473069,745,865 - 69,845,367 (-)Ensembl
RefSeq Acc Id: XM_004834812   ⟹   XP_004834869
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473069,746,207 - 69,871,020 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004834869 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB12503 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000026984
GenBank Protein JAN98275 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004834869   ⟸   XM_004834812
- UniProtKB: A0A0P6J4D7 (UniProtKB/TrEMBL),   G5BTD9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000026984   ⟸   ENSHGLT00000027223


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019186 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000027223 ENTREZGENE
Gene3D-CATH 3.90.1480.20 UniProtKB/TrEMBL
InterPro Glyco_trans_29 UniProtKB/TrEMBL
  GT29-like_sf UniProtKB/TrEMBL
  Sialyl_trans UniProtKB/TrEMBL
KEGG Report hgl:101718025 UniProtKB/TrEMBL
NCBI Gene St6gal1 ENTREZGENE
PANTHER BETA-GALACTOSIDE ALPHA-2,6-SIALYLTRANSFERASE UniProtKB/TrEMBL
  BETA-GALACTOSIDE ALPHA-2,6-SIALYLTRANSFERASE 1 UniProtKB/TrEMBL
Pfam Glyco_transf_29 UniProtKB/TrEMBL
PIRSF Sialyl_trans UniProtKB/TrEMBL
UniProt A0A0P6J4D7 ENTREZGENE, UniProtKB/TrEMBL
  G5BTD9 ENTREZGENE, UniProtKB/TrEMBL