ST6GAL1 (ST6 beta-galactoside alpha-2,6-sialyltransferase 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: ST6GAL1 (ST6 beta-galactoside alpha-2,6-sialyltransferase 1) Chlorocebus sabaeus
Analyze
Symbol: ST6GAL1
Name: ST6 beta-galactoside alpha-2,6-sialyltransferase 1
RGD ID: 18581290
Description: ENCODES a protein that exhibits sialyltransferase activity (ortholog); INVOLVED IN negative regulation of chemotaxis (ortholog); negative regulation of macrophage apoptotic process (ortholog); positive regulation of mononuclear cell proliferation (ortholog); ASSOCIATED WITH 3MC syndrome 1 (ortholog); alcohol use disorder (ortholog); allergic contact dermatitis (ortholog); FOUND IN Golgi medial cisterna (ortholog); Golgi trans cisterna (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: beta-galactoside alpha-2,6-sialyltransferase 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11581,205,121 - 81,346,089 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1581,239,631 - 81,349,173 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604154,697,038 - 54,836,111 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
ST6GAL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11581,205,121 - 81,346,089 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1581,239,631 - 81,349,173 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604154,697,038 - 54,836,111 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ST6GAL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383186,930,526 - 187,078,553 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3186,930,325 - 187,078,553 (+)EnsemblGRCh38hg38GRCh38
GRCh373186,648,315 - 186,796,341 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363188,131,210 - 188,279,035 (+)NCBINCBI36Build 36hg18NCBI36
Celera3185,080,508 - 185,228,493 (+)NCBICelera
Cytogenetic Map3q27.3NCBI
HuRef3184,053,004 - 184,200,845 (+)NCBIHuRef
CHM1_13186,611,743 - 186,760,043 (+)NCBICHM1_1
T2T-CHM13v2.03189,748,335 - 189,896,308 (+)NCBIT2T-CHM13v2.0
St6gal1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391623,043,478 - 23,179,100 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1623,043,490 - 23,179,100 (+)EnsemblGRCm39 Ensembl
GRCm381623,224,729 - 23,360,350 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1623,224,740 - 23,360,350 (+)EnsemblGRCm38mm10GRCm38
MGSCv371623,224,835 - 23,360,421 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361623,140,096 - 23,275,682 (+)NCBIMGSCv36mm8
Celera1623,783,051 - 23,918,950 (+)NCBICelera
Cytogenetic Map16B1NCBI
cM Map1614.03NCBI
St6gal1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81191,031,481 - 91,158,111 (-)NCBIGRCr8
mRatBN7.21177,526,837 - 77,653,474 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1177,526,837 - 77,653,310 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1186,277,327 - 86,319,671 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01178,916,068 - 78,958,433 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01177,991,611 - 78,033,954 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01180,927,601 - 80,981,424 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1180,927,601 - 80,981,422 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01179,754,201 - 79,808,024 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41179,723,269 - 79,765,645 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11179,780,860 - 79,789,781 (-)NCBI
Celera1176,402,694 - 76,445,042 (-)NCBICelera
Cytogenetic Map11q23NCBI
St6gal1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542020,709,301 - 20,801,167 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542020,708,890 - 20,801,167 (-)NCBIChiLan1.0ChiLan1.0
ST6GAL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22184,799,471 - 184,948,596 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13184,804,185 - 184,953,313 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03183,955,462 - 184,104,537 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13192,421,036 - 192,569,970 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3192,488,087 - 192,569,970 (+)Ensemblpanpan1.1panPan2
ST6GAL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13419,497,577 - 19,589,125 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3419,497,922 - 19,586,427 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3423,553,294 - 23,675,456 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03419,379,150 - 19,501,792 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3419,380,090 - 19,501,787 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13419,410,367 - 19,531,590 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03419,410,079 - 19,531,772 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03419,643,504 - 19,764,764 (+)NCBIUU_Cfam_GSD_1.0
St6gal1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602116,874,836 - 117,015,302 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365782,966,694 - 3,003,970 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365782,966,690 - 3,107,237 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ST6GAL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13124,791,751 - 124,837,841 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113124,699,622 - 124,837,847 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
St6gal1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473069,745,865 - 69,845,367 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473069,746,207 - 69,871,020 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000007267   ⟹   ENSCSAP00000005454
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1581,239,631 - 81,349,173 (+)Ensembl
RefSeq Acc Id: XM_008009490   ⟹   XP_008007681
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11581,205,121 - 81,346,089 (+)NCBI
Vero_WHO_p1.0NW_02366604154,697,038 - 54,836,111 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008009491   ⟹   XP_008007682
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11581,300,405 - 81,346,089 (+)NCBI
Vero_WHO_p1.0NW_02366604154,792,136 - 54,836,111 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008009492   ⟹   XP_008007683
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11581,298,416 - 81,346,089 (+)NCBI
Vero_WHO_p1.0NW_02366604154,789,601 - 54,836,111 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038003054   ⟹   XP_037858982
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604154,788,962 - 54,836,111 (+)NCBI
Protein Sequences
Protein RefSeqs XP_008007681 (Get FASTA)   NCBI Sequence Viewer  
  XP_008007682 (Get FASTA)   NCBI Sequence Viewer  
  XP_008007683 (Get FASTA)   NCBI Sequence Viewer  
  XP_037858982 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000005454
  ENSCSAP00000005454.1
RefSeq Acc Id: XP_008007681   ⟸   XM_008009490
- UniProtKB: A0A0D9RA15 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008007683   ⟸   XM_008009492
- UniProtKB: A0A0D9RA15 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008007682   ⟸   XM_008009491
- UniProtKB: A0A0D9RA15 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000005454   ⟸   ENSCSAT00000007267
RefSeq Acc Id: XP_037858982   ⟸   XM_038003054
- UniProtKB: A0A0D9RA15 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000009201 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000007267.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.1480.20 UniProtKB/TrEMBL
InterPro Glyco_trans_29 UniProtKB/TrEMBL
  GT29-like_sf UniProtKB/TrEMBL
  Sialyl_trans UniProtKB/TrEMBL
KEGG Report csab:103241877 UniProtKB/TrEMBL
NCBI Gene ST6GAL1 ENTREZGENE
PANTHER BETA-GALACTOSIDE ALPHA-2,6-SIALYLTRANSFERASE UniProtKB/TrEMBL
  BETA-GALACTOSIDE ALPHA-2,6-SIALYLTRANSFERASE 1 UniProtKB/TrEMBL
Pfam Glyco_transf_29 UniProtKB/TrEMBL
PIRSF Sialyl_trans UniProtKB/TrEMBL
UniProt A0A0D9RA15 ENTREZGENE, UniProtKB/TrEMBL