Symbol:
Sigmar1
Name:
sigma non-opioid intracellular receptor 1
RGD ID:
18918137
Description:
ENCODES a protein that exhibits G protein-coupled opioid receptor activity (ortholog); identical protein binding (ortholog); signaling receptor activity (ortholog); INVOLVED IN nervous system development (ortholog); protein homotrimerization (ortholog); regulation of neuron apoptotic process (ortholog); ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); amnestic disorder (ortholog); amyotrophic lateral sclerosis (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynapse (ortholog); postsynaptic density (ortholog)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
Sigma 1-type opioid receptor
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Sigmar1
SIGMAR1 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 9 34,634,722 - 34,637,787 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 9 34,634,722 - 34,637,844 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 9 34,634,719 - 34,637,784 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 9 34,624,719 - 34,627,768 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 9 34,624,719 - 34,627,768 NCBI Celera 9 34,566,222 - 34,569,271 (-) NCBI Celera Cytogenetic Map 9 p13.3 NCBI HuRef 9 34,589,001 - 34,592,050 (-) NCBI HuRef CHM1_1 9 34,634,494 - 34,637,538 (-) NCBI CHM1_1 T2T-CHM13v2.0 9 34,653,268 - 34,656,333 (-) NCBI T2T-CHM13v2.0
Sigmar1 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 4 41,738,493 - 41,741,359 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 4 41,738,493 - 41,756,157 (-) Ensembl GRCm39 Ensembl GRCm38 4 41,738,493 - 41,741,359 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 4 41,738,493 - 41,756,157 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 4 41,685,369 - 41,688,186 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 4 41,927,007 - 41,929,824 (-) NCBI MGSCv36 mm8 Celera 4 41,399,281 - 41,402,095 (-) NCBI Celera Cytogenetic Map 4 A5 NCBI cM Map 4 22.05 NCBI
Sigmar1 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 5 61,700,021 - 61,702,799 (-) NCBI GRCr8 mRatBN7.2 5 56,904,155 - 56,907,012 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 5 56,904,159 - 56,907,017 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 5 58,883,693 - 58,886,471 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 5 60,702,523 - 60,705,301 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 5 60,688,434 - 60,691,212 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 5 58,121,824 - 58,124,687 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 5 58,121,786 - 58,124,681 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 5 62,645,887 - 62,648,735 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 5 59,162,537 - 59,165,315 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 5 59,162,715 - 59,165,489 (-) NCBI Celera 5 55,498,271 - 55,501,049 (-) NCBI Celera Cytogenetic Map 5 q22 NCBI
Sigmar1 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955472 1,493,896 - 1,496,377 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955472 1,493,896 - 1,496,377 (+) NCBI ChiLan1.0 ChiLan1.0
SIGMAR1 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 11 89,963,584 - 89,968,985 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 9 89,971,824 - 89,974,927 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 9 34,471,362 - 34,474,459 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 9 35,280,777 - 35,283,672 (-) NCBI panpan1.1 PanPan1.1 panPan2
SIGMAR1 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 11 51,310,672 - 51,313,426 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 11 51,311,085 - 51,313,400 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 11 49,939,025 - 49,941,785 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 11 52,251,407 - 52,254,167 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 11 52,251,413 - 52,311,364 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 11 50,914,114 - 50,916,874 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 11 50,782,279 - 50,785,039 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 11 51,547,030 - 51,549,790 (-) NCBI UU_Cfam_GSD_1.0
Sigmar1 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024404947 166,170,303 - 166,173,309 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936524 2,715,769 - 2,721,085 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936524 2,717,885 - 2,720,874 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
SIGMAR1 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 10 32,160,822 - 32,164,718 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 10 32,160,767 - 32,163,540 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 10 36,303,067 - 36,305,797 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
.
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSHGLT00000011830 ⟹ ENSHGLP00000011702
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla_female_1.0 Ensembl NW_004624736 39,032,517 - 39,035,176 (-) Ensembl
Ensembl Acc Id:
ENSHGLT00000011831 ⟹ ENSHGLP00000011703
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla_female_1.0 Ensembl NW_004624736 39,033,333 - 39,035,072 (-) Ensembl
RefSeq Acc Id:
XM_004838438 ⟹ XP_004838495
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla 1.0 NW_004624736 39,033,127 - 39,035,170 (-) NCBI
RefSeq Acc Id:
XM_004838439 ⟹ XP_004838496
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla 1.0 NW_004624736 39,023,641 - 39,035,180 (-) NCBI
RefSeq Acc Id:
XP_004838496 ⟸ XM_004838439
- Peptide Label:
isoform X1
- UniProtKB:
A0AAX6NWF8 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_004838495 ⟸ XM_004838438
- Peptide Label:
isoform X2
- UniProtKB:
G5B063 (UniProtKB/TrEMBL)
Ensembl Acc Id:
ENSHGLP00000011702 ⟸ ENSHGLT00000011830
Ensembl Acc Id:
ENSHGLP00000011703 ⟸ ENSHGLT00000011831
