Pogk (pogo transposable element derived with KRAB domain) - Rat Genome Database

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Gene: Pogk (pogo transposable element derived with KRAB domain) Heterocephalus glaber
Analyze
Symbol: Pogk
Name: pogo transposable element derived with KRAB domain
RGD ID: 18915786
Description: ENCODES a protein that exhibits DNA binding (inferred); nucleic acid binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); parathyroid carcinoma (ortholog); FOUND IN nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: pogo transposable element with KRAB domain
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248264,905,577 - 4,914,847 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248264,904,790 - 4,919,136 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (ISO)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pogk
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248264,905,577 - 4,914,847 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248264,904,790 - 4,919,136 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
POGK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381166,839,475 - 166,856,359 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1166,839,447 - 166,856,359 (+)EnsemblGRCh38hg38GRCh38
GRCh371166,808,712 - 166,825,596 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,075,348 - 165,090,333 (+)NCBINCBI36Build 36hg18NCBI36
Build 341163,540,381 - 163,555,367NCBI
Celera1139,913,857 - 139,928,842 (+)NCBICelera
Cytogenetic Map1q24.1NCBI
HuRef1138,055,893 - 138,070,761 (+)NCBIHuRef
CHM1_11168,230,466 - 168,245,422 (+)NCBICHM1_1
T2T-CHM13v2.01166,185,193 - 166,202,191 (+)NCBIT2T-CHM13v2.0
Pogk
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391166,221,179 - 166,237,402 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1166,212,191 - 166,237,432 (-)EnsemblGRCm39 Ensembl
GRCm381166,393,610 - 166,409,853 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1166,384,622 - 166,409,863 (-)EnsemblGRCm38mm10GRCm38
MGSCv371168,323,741 - 168,339,959 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361168,234,262 - 168,246,481 (-)NCBIMGSCv36mm8
Celera1168,834,716 - 168,850,791 (-)NCBICelera
Cytogenetic Map1H2.3NCBI
cM Map173.75NCBI
Pogk
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81381,180,410 - 81,196,326 (-)NCBIGRCr8
mRatBN7.21378,647,447 - 78,663,363 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1378,647,447 - 78,663,363 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1381,265,765 - 81,281,700 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01382,579,317 - 82,595,255 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01379,818,107 - 79,834,045 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01384,603,126 - 84,619,042 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1384,603,126 - 84,619,042 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01389,463,024 - 89,493,305 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41382,125,644 - 82,141,560 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11382,144,844 - 82,175,821 (-)NCBI
Celera1378,356,003 - 78,371,918 (-)NCBICelera
Cytogenetic Map13q23NCBI
Pogk
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546210,079,185 - 10,089,010 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546210,075,834 - 10,089,954 (-)NCBIChiLan1.0ChiLan1.0
POGK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2182,925,088 - 82,940,151 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1182,593,652 - 82,608,712 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01142,256,758 - 142,271,812 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11146,044,686 - 146,059,116 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1146,044,684 - 146,059,116 (+)Ensemblpanpan1.1panPan2
POGK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1731,531,633 - 31,546,694 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl731,532,831 - 31,547,283 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha731,070,269 - 31,085,241 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0731,353,482 - 31,368,462 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl731,353,483 - 31,368,302 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1731,191,198 - 31,206,171 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0731,223,446 - 31,238,595 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0731,461,970 - 31,476,933 (-)NCBIUU_Cfam_GSD_1.0
Pogk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344101,199,309 - 101,211,917 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648119,046,058 - 19,058,680 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648119,046,058 - 19,058,654 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POGK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl484,189,004 - 84,204,723 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1484,188,993 - 84,204,869 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2491,903,989 - 91,911,093 (-)NCBISscrofa10.2Sscrofa10.2susScr3
POGK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12562,178,214 - 62,193,356 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2562,177,847 - 62,193,247 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605563,914,977 - 63,930,451 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000016286   ⟹   ENSHGLP00000016117
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248264,905,577 - 4,914,847 (+)Ensembl
RefSeq Acc Id: XM_004865191   ⟹   XP_004865248
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248264,904,790 - 4,919,136 (+)NCBI
RefSeq Acc Id: XM_004865192   ⟹   XP_004865249
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248264,905,007 - 4,919,136 (+)NCBI
RefSeq Acc Id: XM_021244646   ⟹   XP_021100305
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248264,904,877 - 4,919,136 (+)NCBI
RefSeq Acc Id: XM_021244647   ⟹   XP_021100306
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248264,906,140 - 4,919,136 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004865248 (Get FASTA)   NCBI Sequence Viewer  
  XP_004865249 (Get FASTA)   NCBI Sequence Viewer  
  XP_021100305 (Get FASTA)   NCBI Sequence Viewer  
  XP_021100306 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHA99149 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000016117
GenBank Protein JAO02134 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004865248   ⟸   XM_004865191
- Peptide Label: isoform X1
- UniProtKB: G5AQ39 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021100305   ⟸   XM_021244646
- Peptide Label: isoform X1
- UniProtKB: G5AQ39 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004865249   ⟸   XM_004865192
- Peptide Label: isoform X1
- UniProtKB: G5AQ39 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021100306   ⟸   XM_021244647
- Peptide Label: isoform X2
RefSeq Acc Id: ENSHGLP00000016117   ⟸   ENSHGLT00000016286


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011531 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000016286 ENTREZGENE
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro Brinker_DNA-bd UniProtKB/TrEMBL
  DDE_SF_endonuclease_dom UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/TrEMBL
  HTH_CenpB_DNA-bd_dom UniProtKB/TrEMBL
  KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box-rel UniProtKB/TrEMBL
KEGG Report hgl:101720169 UniProtKB/TrEMBL
NCBI Gene Pogk ENTREZGENE
PANTHER POGO TRANSPOSABLE ELEMENT WITH KRAB DOMAIN UniProtKB/TrEMBL
  TRANSPOSON UniProtKB/TrEMBL
Pfam BrkDBD UniProtKB/TrEMBL
  DDE_1 UniProtKB/TrEMBL
  HTH_Tnp_Tc5 UniProtKB/TrEMBL
  KRAB UniProtKB/TrEMBL
PROSITE HTH_CENPB UniProtKB/TrEMBL
  KRAB UniProtKB/TrEMBL
  KRAB_RELATED UniProtKB/TrEMBL
SMART CENPB UniProtKB/TrEMBL
  KRAB UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF46689 UniProtKB/TrEMBL
UniProt G5AQ39 ENTREZGENE, UniProtKB/TrEMBL