POGK (pogo transposable element derived with KRAB domain)

Gene: POGK (pogo transposable element derived with KRAB domain) Sus scrofa

Analyze

Symbol:

POGK

Name:

pogo transposable element derived with KRAB domain

RGD ID:

14037183

Description:

ENCODES a protein that exhibits DNA binding (inferred); nucleic acid binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); parathyroid carcinoma (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

pogo transposable element with KRAB domain

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	84,189,004 - 84,204,723 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	84,188,993 - 84,204,869 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	91,903,989 - 91,911,093 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

parathyroid carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of DNA-templated transcription (IEA)

Cellular Component

nucleoplasm (IEA)

nucleus (IBA,IEA)

Molecular Function

DNA binding (IBA,IEA)

nucleic acid binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:14681463	PMID:17145712	PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

POGK
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	84,189,004 - 84,204,723 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	84,188,993 - 84,204,869 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	91,903,989 - 91,911,093 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

POGK
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	166,839,475 - 166,856,359 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	166,839,447 - 166,856,359 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	166,808,712 - 166,825,596 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	165,075,348 - 165,090,333 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	163,540,381 - 163,555,367	NCBI
Celera	1	139,913,857 - 139,928,842 (+)	NCBI		Celera
Cytogenetic Map	1	q24.1	NCBI
HuRef	1	138,055,893 - 138,070,761 (+)	NCBI		HuRef
CHM1_1	1	168,230,466 - 168,245,422 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	166,185,193 - 166,202,191 (+)	NCBI		T2T-CHM13v2.0

Pogk
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	166,221,179 - 166,237,402 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	166,212,191 - 166,237,432 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	166,393,610 - 166,409,853 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	166,384,622 - 166,409,863 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	168,323,741 - 168,339,959 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	168,234,262 - 168,246,481 (-)	NCBI		MGSCv36	mm8
Celera	1	168,834,716 - 168,850,791 (-)	NCBI		Celera
Cytogenetic Map	1	H2.3	NCBI
cM Map	1	73.75	NCBI

Pogk
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	81,180,410 - 81,196,326 (-)	NCBI		GRCr8
mRatBN7.2	13	78,647,447 - 78,663,363 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	78,647,447 - 78,663,363 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	81,265,765 - 81,281,700 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	82,579,317 - 82,595,255 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	79,818,107 - 79,834,045 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	84,603,126 - 84,619,042 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	84,603,126 - 84,619,042 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	89,463,024 - 89,493,305 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	82,125,644 - 82,141,560 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	82,144,844 - 82,175,821 (-)	NCBI
Celera	13	78,356,003 - 78,371,918 (-)	NCBI		Celera
Cytogenetic Map	13	q23	NCBI

Pogk
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955462	10,079,185 - 10,089,010 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955462	10,075,834 - 10,089,954 (-)	NCBI	ChiLan1.0	ChiLan1.0

POGK
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	82,925,088 - 82,940,151 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	82,593,652 - 82,608,712 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	142,256,758 - 142,271,812 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	146,044,686 - 146,059,116 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	146,044,684 - 146,059,116 (+)	Ensembl	panpan1.1		panPan2

POGK
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	31,531,633 - 31,546,694 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	31,532,831 - 31,547,283 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	31,070,269 - 31,085,241 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	31,353,482 - 31,368,462 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	31,353,483 - 31,368,302 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	31,191,198 - 31,206,171 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	31,223,446 - 31,238,595 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	31,461,970 - 31,476,933 (-)	NCBI		UU_Cfam_GSD_1.0

Pogk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	101,199,309 - 101,211,917 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936481	19,046,058 - 19,058,680 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936481	19,046,058 - 19,058,654 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

POGK
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	62,178,214 - 62,193,356 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	62,177,847 - 62,193,247 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	63,914,977 - 63,930,451 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pogk
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624826	4,905,577 - 4,914,847 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624826	4,904,790 - 4,919,136 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in POGK
378 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium	2		3	2		18	2	3	2
Low	8	4		3	2	5			1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001244259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021088566	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021088567	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021088568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021088569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK395673	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU207249	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EU814891	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01062147	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000051800 ⟹ ENSSSCP00000057242

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	84,189,004 - 84,204,723 (-)	Ensembl

RefSeq Acc Id:

NM_001244259 ⟹ NP_001231188

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	84,190,515 - 84,203,175 (-)	NCBI

Sequence:

show sequence

ATGGAATCCACAGCCTACCCTCTCAATTTCGTCCTGAAGGAAGAGGAACAAGAAGAAGAGATTA
GGAGCCGGGAACTGGAGGATGGTCCCACAGATATGCAGAAGGTCCGAATCTGCTCAGAGGGCGG
ATGGGTGCCGGCCCTGTTCGATGAGGTGGCCATATATTTCTCTGATGAGGAGTGGGAAGTTTTG
ACGGAGCAACAAAAGGCCCTCTACCGGGAGGTCATGAGGATGAATTATGAAACTGTCCTGTCCC
TGGAATTCCCATTCCCTAAGCCCGACATGATCACTCGGTTGGAAGGGGAGGAGGAGTCTCAGAA
TTCCGACGAATGGCAGCTCCAAGGAGGAACCTTTGCAGAAAATGAAGAATCCGACCTGAAGCCC
CCGGATTGGGCAAGCCCGATGCACACGGCCTCCCAGTTTCCCCAGCCTCAGCACCTGGACGGCT
TTGGCCTCCGTCTGCCTCGGGACATCACAGAGCTGCCCGAGTGGGGCGAGGGGTACCCCTTCTA
CATGGCCATGGGCTTCCCTGGCTACGACCTCTCGGCCGACGACCTGGCCGGCAAGTTTCAGTTC
AGCCGGGGCATGCGCCGTAGTTACGACGCTGGGTTCAAGCTCATGGTGGTGGAGTATGCGGAGA
GCACTAATAACTGCCAGGCGGCCAAGCAGTTTGGGGTGCTGGAGAAAAACGTCCGCGACTGGCG
CAAGGTGAAGCCACAGCTGCAGAATGCGCATGCCATGCGGCGCGCCTTCCGGGGCCCCAAAAAC
GGGCGCTTTGCCCTTGTGGACCAACGTGTGGCTGAGTACGTTCGATACATGCAGGCCAAGGGGG
ACCCCATCACTAGGGAGGCCATGCAGCTGAAAGCTCTCGAGATCGCCCAGGAAATGAACATTCC
AGAGAAAGGGTTCAAGGCCAGCTTGGGTTGGTGCCGCAGAATGATGCGAAGGTATGACTTGTCT
CTGCGGCATAAGGTGCCGGTGCCCCAGCAGCTGCCCGAAGATTTGACTGAGAAGCTTGTCACCT
ACCAGCGAAGTGTCCTGGCCCTGCGAAGGGCGCACGACTACCAGGTGGCTCAGATGGGAAATGC
AGACGAGACGCCCATTTGCTTGGAGGTGCCCTCAAGGGTGACTGTGGACAACCAGGGTGAAAAG
CCGGTCTTGGTCAAGACACCAGGCAGGGAGAAACTGAAAATCACGGCTATGCTTGGCGTCCTGG
CTGATGGGAGGAAGTTACCTCCGTACATCATTCTGAGGGGTACGTACATCCCCCCCGGGAAGTT
CCCCAGTGGCATGGAAATCCGCTGCCACCGGTATGGATGGATGACGGAGGACTTGATGCAGGAC
TGGTTGGAAGTGGTGTGGAGGCGGAGGACTGGCGCCGTGCCCAAGCAGCGGGGGATGCTGATCC
TGAACGGCTTCCGGGGTCACGCCACGGATTCGGTGAAGAGCTCCATGGAAAGCATGAACACTGA
CATGGTCATCATCCCGGGGGGCCTGACCTCGCAGCTGCAGGTGTTAGATGTGGTGGTCTACAAA
CCGCTGAATGACAGTGTCCGGGCGCAGTACTCCAATTGGCTTCTGGCGGGAAACCTGGCGCTGA
GCCCCACTGGGAACGCCAAGAAGCCGCCCCTTGGCCTCTTTCTGGAGTGGGTCATGGTAGCGTG
GAACAGCATCTCAAGTGAATCCATTGTCCAAGGGTTCAAGAAGTGCCACATCTCCAGCAACTTG
GAAGATGAAGATGACGTCCTATGGGAAATTGAGAGCGAGTTGCCAGGAGGAGGGGAGCCACCCA
AAGAGTGTGACACGGAGAGCCTGACAGAGAGCAACTGAGGGAAAGCCAAGCAATTGGAACTGTG
TTTGGAACAGTTGGGGAAGAAGGTCCTTAAGAAGATTCCTCATGGTGTGGATGCATGGAAGAAG
GCCATGGGGCTCAAACAGTGCAGGTCTGGACAGCAGCCCAAGTCTGGACAGCAGCCCGAGCATC
CCATCCTGGGCAACAGCTCAACTCCGCCCAACATCGATGAGGTGCCAGAAAAGTCTAGGACCCT
TAATTCATCAGAGACATAGTTAGAAAAGAAACTACTTCCGCCTCATTTTCTTGTTTTAGAGATG
ACTTCATGCGTCCGTTAAAGGAAACCTGTAAATAGGAATGAACAAAGGTATTTCCTGGAGATGA
GACCATTTG

hide sequence

RefSeq Acc Id:

XM_021088566 ⟹ XP_020944225

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	84,188,993 - 84,204,869 (-)	NCBI

Sequence:

show sequence

CCCCCGGCGTCGCCGAGGCCCGCTGACATCAGCCGCGCTCCTCCCCTCGCCTCCCAACACCCTC
AGCTCCCGGCCGGACCCTCCCTCCTCCCACCACGTGTCCTCCCCGCTCCCTCCCGAGGGGCCGC
GCGGACGGGAAGCCGGAGAGACGCAAAGGATGGCGCTGTGACAGCCGGGCCGGAGCCCTTGGCG
TCTCCACCCGCGGCCCCGGGCCGCGCCGGGGCGCTCCGCCTGGCGAAATGGAATCCACAGCCTA
CCCTCTCAATTTCGTCCTGAAGGAAGAGGAACAAGAAGAAGAGATTAGGAGCCGGGAACTGGAG
GATGGTCCCACAGATATGCAGAAGGTCCGAATCTGCTCAGAGGGCGGATGGGTGCCGGCCCTGT
TCGATGAGGTGGCCATATATTTCTCTGATGAGGAGTGGGAAGTTTTGACGGAGCAACAAAAGGC
CCTCTACCGGGAGGTCATGAGGATGAATTATGAAACTGTCCTGTCCCTGGAATTCCCATTCCCT
AAGCCCGACATGATCACTCGGTTGGAAGGGGAGGAGGAGTCTCAGAATTCCGACGAATGGCAGC
TCCAAGGAGGAACCTTTGCAGAAAATGAAGAATCCGACCTGAAGCCCCCGGATTGGGCAAGCCC
GATGCACACGGCCTCCCAGTTTCCCCAGCCTCAGCACCTGGACGGCTTTGGCCTCCGTCTGCCT
CGGGACATCACAGAGCTGCCCGAGTGGGGCGAGGGGTACCCCTTCTACATGGCCATGGGCTTCC
CTGGCTACGACCTCTCGGCCGACGACCTGGCCGGCAAGTTTCAGTTCAGCCGGGGCATGCGCCG
TAGTTACGACGCTGGGTTCAAGCTCATGGTGGTGGAGTATGCGGAGAGCACTAATAACTGCCAG
GCGGCCAAGCAGTTTGGGGTGCTGGAGAAAAACGTCCGCGACTGGCGCAAGGTGAAGCCACAGC
TGCAGAATGCGCATGCCATGCGGCGCGCCTTCCGGGGCCCCAAAAACGGGCGCTTTGCCCTTGT
GGACCAACGTGTGGCTGAGTACGTTCGATACATGCAGGCCAAGGGGGACCCCATCACTAGGGAG
GCCATGCAGCTGAAAGCTCTCGAGATCGCCCAGGAAATGAACATTCCAGAGAAAGGGTTCAAGG
CCAGCTTGGGTTGGTGCCGCAGAATGATGCGAAGGTATGACTTGTCTCTGCGGCATAAGGTGCC
GGTGCCCCAGCAGCTGCCCGAAGACTTGACTGAGAAGCTTGTCACCTACCAGCGAAGTGTCCTG
GCCCTGCGAAGGGCGCACGACTACCAGGTGGCTCAGATGGGAAATGCAGACGAGACGCCCATTT
GCTTGGAGGTGCCCTCAAGGGTGACTGTGGACAACCAGGGTGAAAAGCCGGTCTTGGTCAAGAC
ACCAGGCAGGGAGAAACTGAAAATCACGGCTATGCTTGGCGTCCTGGCTGATGGGAGGAAGTTA
CCTCCGTACATCATTCTGAGGGGTACGTACATCCCCCCCGGGAAGTTCCCCAGTGGCATGGAAA
TCCGCTGCCACCGGTACGGATGGATGACGGAGGACTTGATGCAGGACTGGTTGGAAGTGGTGTG
GAGGCGGAGGACTGGCGCCGTGCCCAAGCAGCGGGGGATGCTGATCCTGAACGGCTTCCGGGGT
CACGCCACGGATTCGGTGAAGAGCTCCATGGAAAGCATGAACACTGACATGGTCATCATCCCGG
GGGGCCTGACCTCGCAGCTGCAGGTGTTAGATGTGGTGGTCTACAAACCGCTGAATGACAGTGT
CCGGGCGCAGTACTCCAATTGGCTTCTGGCGGGAAACCTGGCGCTGAGCCCCACTGGGAACGCC
AAGAAGCCGCCCCTTGGCCTCTTTCTGGAGTGGGTCATGGTAGCGTGGAACAGCATCTCAAGTG
AATCCATTGTCCAAGGGTTCAAGAAGTGCCACATCTCCAGCAACTTGGAAGATGAAGATGACGT
CCTATGGGAAATTGAGAGCGAGTTGCCAGGAGGAGGGGAGCCACCCAAAGAGTGTGACACGGAG
AGCCTGACAGAGAGCAACTGAGGGAAAGCCAAGCAATTGGAACTGTGTTTGGAACAGTTGGGGA
AGAAGGTCCTTAAGAAGATTCCTCATGGTGTGGATGCATGGAAGAAGGCCATGGGGCTCAAACA
GTGCAGGTCTGGACAGCAGCCCAGGTCTGGACAGCAGCCCGAGCATCCCATCCTGGGCAACAGC
TCAACTCCGCCCAACATCGATGAGGTGCCAGAAAAGTCTAGGACCCTTAATTCATCAGAGACAT
AGTTAGAAAAGAAACTACTTCTGCCTCATTTTCTTGTTTTAGAGATGACTTCATGCGTCCGTTA
AAGGAAACCTGTAAATAGGAATGAACAAAGGTATTTCCTGGAGATGAGACCATTTGTTCAGCAC
CAACAAGAGACTTACATACGGGCCCAGCTCCACTGCTTTCCTTTCTGTGGAGAAAACCTCAAGT
AAAATGTTTTTTCTTCTGCCTTTAAAAATGCTTCCATCAGTAGAACCTGTCCCCACACAGGTCA
AGACTGCAGAGAAAGCTTTGTAGAAATGGTCATTTATGTACACCTGCTACTTACACATTGCCTC
TTTTTGGAAAAATGAGATACTGATGATCATAGCAAAATTCAGACGTACTGGCCTGGAGCCAGCA
GATGGATTTTCTATAGACAAACTAGGTTAGTGTGGAAGATACAGGTTAAAATAAACTATGCTGT
TTTATTTATCTTCCCAATCTGGTTGGCAGCTAAACTTTTTTAGGGTCTCATTTAATGGCCCTGT
TTTTCCTTATTATATTTAATGATCGGGTAGCATTTAGTACACAAGCTCTTCTGTTCTCAGGCTG
CCTGCTGGAGAAATCACCATAAATTATCTGCTGTCTACATGGTACAAGGCTCACTGACTCTGAT
ACTTGTTAATTTCTTTTTGTTTTGTTTTATCATAAGGGTGGTGAGAGGGCTTGAGCCTTTAGCC
ACAGCTGTCTCAAGACTTCTGATCTTCTATCCTGCAGAAATAGGTGGGAGGCCTTTGAATTTTT
ACACTATAGTAATTTGCATTCCCACATAAGTTGAGTGTTATGAAAACATTCCTTCAAAGCTATT
TGTGCTACAAAAAATATGCCAGAACCTCATAGACAAAGCCATTGCTATAAATGTCATTCCAATG
TCAAAGCTGGATAAAAGACTACCATAACCACTTTCCCTTCCAGCAGACCCAGCTCATTTATATA
TTATGCTGTTCTTGGCATCTTGAAACACCTATTTCTACTCAGGTACTCATTTTCCTATTAGTCA
TTCTTTTTAAAACCAGTTTTCCTCTAAGAGGGGAAATTTCACTTAACTTCTTATATCTGAATAA
CTTTGAATGTTTGTTTCCCCATTTGCTTTTACCTCTACTGTATTGTCATCTCAAATGGCATCTA
AATCCAGTTGTGTTTCATTCCAAAAGTTTTCATTCCCTCCCATTTCACTTAATTTATCCTCCAC
TGTTCTGGTTTCTGGTCTTTTCCTCTTTATGTCCTATTTTACTTGCTTAGGGAGCTTAAAGGAT
TTTCTAAGACCTAATATTTGGTTCCTGCACTGGAGCCATAGTTATATTGCAGAGAAGAGTAGAA
AATGGGTTCAACTCCTGTTTCATTCCACCAACACCTTCTTGAGTCTCATCATCAGCTGATAGAT
GATGCCTTACAGGTTGCATAGCACTGGAACTTGAATAGAGTAATGGCTCTACTGTCAGGGTTTT
TCTGGGCTCATTCTTCCACTGACTTAATTATGATCTATGCCTAACCGAGCCCTAGTACAACTAT
TTTGCAGAATGGCCTAGAGTTACTATAGCACATATTGAGACATAGTTGTACTCCCCAGTAGATA
GGAACTGACTCCAACAATAAACTTTGATAATAAAGACAATAA

hide sequence

RefSeq Acc Id:

XM_021088567 ⟹ XP_020944226

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	84,188,993 - 84,204,546 (-)	NCBI

Sequence:

show sequence

CGCGGCGGGGGTGGAGGCGGGGGTGCCGAGGCTGCAGCTGCAGCTGCCGCCACCGCCGCCTTTG
TTGCGGGCCCGCCAAGGGAGGCAGGCGACGCCGGCCTCCGCCGCTCGGCAGAAATGGAATCCAC
AGCCTACCCTCTCAATTTCGTCCTGAAGGAAGAGGAACAAGAAGAAGAGATTAGGAGCCGGGAA
CTGGAGGATGGTCCCACAGATATGCAGAAGGTCCGAATCTGCTCAGAGGGCGGATGGGTGCCGG
CCCTGTTCGATGAGGTGGCCATATATTTCTCTGATGAGGAGTGGGAAGTTTTGACGGAGCAACA
AAAGGCCCTCTACCGGGAGGTCATGAGGATGAATTATGAAACTGTCCTGTCCCTGGAATTCCCA
TTCCCTAAGCCCGACATGATCACTCGGTTGGAAGGGGAGGAGGAGTCTCAGAATTCCGACGAAT
GGCAGCTCCAAGGAGGAACCTTTGCAGAAAATGAAGAATCCGACCTGAAGCCCCCGGATTGGGC
AAGCCCGATGCACACGGCCTCCCAGTTTCCCCAGCCTCAGCACCTGGACGGCTTTGGCCTCCGT
CTGCCTCGGGACATCACAGAGCTGCCCGAGTGGGGCGAGGGGTACCCCTTCTACATGGCCATGG
GCTTCCCTGGCTACGACCTCTCGGCCGACGACCTGGCCGGCAAGTTTCAGTTCAGCCGGGGCAT
GCGCCGTAGTTACGACGCTGGGTTCAAGCTCATGGTGGTGGAGTATGCGGAGAGCACTAATAAC
TGCCAGGCGGCCAAGCAGTTTGGGGTGCTGGAGAAAAACGTCCGCGACTGGCGCAAGGTGAAGC
CACAGCTGCAGAATGCGCATGCCATGCGGCGCGCCTTCCGGGGCCCCAAAAACGGGCGCTTTGC
CCTTGTGGACCAACGTGTGGCTGAGTACGTTCGATACATGCAGGCCAAGGGGGACCCCATCACT
AGGGAGGCCATGCAGCTGAAAGCTCTCGAGATCGCCCAGGAAATGAACATTCCAGAGAAAGGGT
TCAAGGCCAGCTTGGGTTGGTGCCGCAGAATGATGCGAAGGTATGACTTGTCTCTGCGGCATAA
GGTGCCGGTGCCCCAGCAGCTGCCCGAAGACTTGACTGAGAAGCTTGTCACCTACCAGCGAAGT
GTCCTGGCCCTGCGAAGGGCGCACGACTACCAGGTGGCTCAGATGGGAAATGCAGACGAGACGC
CCATTTGCTTGGAGGTGCCCTCAAGGGTGACTGTGGACAACCAGGGTGAAAAGCCGGTCTTGGT
CAAGACACCAGGCAGGGAGAAACTGAAAATCACGGCTATGCTTGGCGTCCTGGCTGATGGGAGG
AAGTTACCTCCGTACATCATTCTGAGGGGTACGTACATCCCCCCCGGGAAGTTCCCCAGTGGCA
TGGAAATCCGCTGCCACCGGTACGGATGGATGACGGAGGACTTGATGCAGGACTGGTTGGAAGT
GGTGTGGAGGCGGAGGACTGGCGCCGTGCCCAAGCAGCGGGGGATGCTGATCCTGAACGGCTTC
CGGGGTCACGCCACGGATTCGGTGAAGAGCTCCATGGAAAGCATGAACACTGACATGGTCATCA
TCCCGGGGGGCCTGACCTCGCAGCTGCAGGTGTTAGATGTGGTGGTCTACAAACCGCTGAATGA
CAGTGTCCGGGCGCAGTACTCCAATTGGCTTCTGGCGGGAAACCTGGCGCTGAGCCCCACTGGG
AACGCCAAGAAGCCGCCCCTTGGCCTCTTTCTGGAGTGGGTCATGGTAGCGTGGAACAGCATCT
CAAGTGAATCCATTGTCCAAGGGTTCAAGAAGTGCCACATCTCCAGCAACTTGGAAGATGAAGA
TGACGTCCTATGGGAAATTGAGAGCGAGTTGCCAGGAGGAGGGGAGCCACCCAAAGAGTGTGAC
ACGGAGAGCCTGACAGAGAGCAACTGAGGGAAAGCCAAGCAATTGGAACTGTGTTTGGAACAGT
TGGGGAAGAAGGTCCTTAAGAAGATTCCTCATGGTGTGGATGCATGGAAGAAGGCCATGGGGCT
CAAACAGTGCAGGTCTGGACAGCAGCCCAGGTCTGGACAGCAGCCCGAGCATCCCATCCTGGGC
AACAGCTCAACTCCGCCCAACATCGATGAGGTGCCAGAAAAGTCTAGGACCCTTAATTCATCAG
AGACATAGTTAGAAAAGAAACTACTTCTGCCTCATTTTCTTGTTTTAGAGATGACTTCATGCGT
CCGTTAAAGGAAACCTGTAAATAGGAATGAACAAAGGTATTTCCTGGAGATGAGACCATTTGTT
CAGCACCAACAAGAGACTTACATACGGGCCCAGCTCCACTGCTTTCCTTTCTGTGGAGAAAACC
TCAAGTAAAATGTTTTTTCTTCTGCCTTTAAAAATGCTTCCATCAGTAGAACCTGTCCCCACAC
AGGTCAAGACTGCAGAGAAAGCTTTGTAGAAATGGTCATTTATGTACACCTGCTACTTACACAT
TGCCTCTTTTTGGAAAAATGAGATACTGATGATCATAGCAAAATTCAGACGTACTGGCCTGGAG
CCAGCAGATGGATTTTCTATAGACAAACTAGGTTAGTGTGGAAGATACAGGTTAAAATAAACTA
TGCTGTTTTATTTATCTTCCCAATCTGGTTGGCAGCTAAACTTTTTTAGGGTCTCATTTAATGG
CCCTGTTTTTCCTTATTATATTTAATGATCGGGTAGCATTTAGTACACAAGCTCTTCTGTTCTC
AGGCTGCCTGCTGGAGAAATCACCATAAATTATCTGCTGTCTACATGGTACAAGGCTCACTGAC
TCTGATACTTGTTAATTTCTTTTTGTTTTGTTTTATCATAAGGGTGGTGAGAGGGCTTGAGCCT
TTAGCCACAGCTGTCTCAAGACTTCTGATCTTCTATCCTGCAGAAATAGGTGGGAGGCCTTTGA
ATTTTTACACTATAGTAATTTGCATTCCCACATAAGTTGAGTGTTATGAAAACATTCCTTCAAA
GCTATTTGTGCTACAAAAAATATGCCAGAACCTCATAGACAAAGCCATTGCTATAAATGTCATT
CCAATGTCAAAGCTGGATAAAAGACTACCATAACCACTTTCCCTTCCAGCAGACCCAGCTCATT
TATATATTATGCTGTTCTTGGCATCTTGAAACACCTATTTCTACTCAGGTACTCATTTTCCTAT
TAGTCATTCTTTTTAAAACCAGTTTTCCTCTAAGAGGGGAAATTTCACTTAACTTCTTATATCT
GAATAACTTTGAATGTTTGTTTCCCCATTTGCTTTTACCTCTACTGTATTGTCATCTCAAATGG
CATCTAAATCCAGTTGTGTTTCATTCCAAAAGTTTTCATTCCCTCCCATTTCACTTAATTTATC
CTCCACTGTTCTGGTTTCTGGTCTTTTCCTCTTTATGTCCTATTTTACTTGCTTAGGGAGCTTA
AAGGATTTTCTAAGACCTAATATTTGGTTCCTGCACTGGAGCCATAGTTATATTGCAGAGAAGA
GTAGAAAATGGGTTCAACTCCTGTTTCATTCCACCAACACCTTCTTGAGTCTCATCATCAGCTG
ATAGATGATGCCTTACAGGTTGCATAGCACTGGAACTTGAATAGAGTAATGGCTCTACTGTCAG
GGTTTTTCTGGGCTCATTCTTCCACTGACTTAATTATGATCTATGCCTAACCGAGCCCTAGTAC
AACTATTTTGCAGAATGGCCTAGAGTTACTATAGCACATATTGAGACATAGTTGTACTCCCCAG
TAGATAGGAACTGACTCCAACAATAAACTTTGATAATAAAGACAATAA

hide sequence

RefSeq Acc Id:

XM_021088568 ⟹ XP_020944227

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	84,188,993 - 84,204,743 (-)	NCBI

Sequence:

show sequence

GCGCGGACGGGAAGCCGGAGAGACGCAAAGGATGGCGCTGTGACAGCCGGGCCGGAGCCCTTGG
CGTCTCCACCCGCGGCCCCGGGCCGCGCCGGGGCGCTCCGCCTGGCGAAATGGAATCCACAGCC
TACCCTCTCAATTTCGTCCTGAAGGAAGAGGAACAAGAAGAAGAGATTAGGAGCCGGGAACTGG
AGGATGGTCCCACAGATATGCAGAAGGTCCGAATCTGCTCAGAGGGCGGATGGAATTCCCATTC
CCTAAGCCCGACATGATCACTCGGTTGGAAGGGGAGGAGGAGTCTCAGAATTCCGACGAATGGC
AGCTCCAAGGAGGAACCTTTGCAGAAAATGAAGAATCCGACCTGAAGCCCCCGGATTGGGCAAG
CCCGATGCACACGGCCTCCCAGTTTCCCCAGCCTCAGCACCTGGACGGCTTTGGCCTCCGTCTG
CCTCGGGACATCACAGAGCTGCCCGAGTGGGGCGAGGGGTACCCCTTCTACATGGCCATGGGCT
TCCCTGGCTACGACCTCTCGGCCGACGACCTGGCCGGCAAGTTTCAGTTCAGCCGGGGCATGCG
CCGTAGTTACGACGCTGGGTTCAAGCTCATGGTGGTGGAGTATGCGGAGAGCACTAATAACTGC
CAGGCGGCCAAGCAGTTTGGGGTGCTGGAGAAAAACGTCCGCGACTGGCGCAAGGTGAAGCCAC
AGCTGCAGAATGCGCATGCCATGCGGCGCGCCTTCCGGGGCCCCAAAAACGGGCGCTTTGCCCT
TGTGGACCAACGTGTGGCTGAGTACGTTCGATACATGCAGGCCAAGGGGGACCCCATCACTAGG
GAGGCCATGCAGCTGAAAGCTCTCGAGATCGCCCAGGAAATGAACATTCCAGAGAAAGGGTTCA
AGGCCAGCTTGGGTTGGTGCCGCAGAATGATGCGAAGGTATGACTTGTCTCTGCGGCATAAGGT
GCCGGTGCCCCAGCAGCTGCCCGAAGACTTGACTGAGAAGCTTGTCACCTACCAGCGAAGTGTC
CTGGCCCTGCGAAGGGCGCACGACTACCAGGTGGCTCAGATGGGAAATGCAGACGAGACGCCCA
TTTGCTTGGAGGTGCCCTCAAGGGTGACTGTGGACAACCAGGGTGAAAAGCCGGTCTTGGTCAA
GACACCAGGCAGGGAGAAACTGAAAATCACGGCTATGCTTGGCGTCCTGGCTGATGGGAGGAAG
TTACCTCCGTACATCATTCTGAGGGGTACGTACATCCCCCCCGGGAAGTTCCCCAGTGGCATGG
AAATCCGCTGCCACCGGTACGGATGGATGACGGAGGACTTGATGCAGGACTGGTTGGAAGTGGT
GTGGAGGCGGAGGACTGGCGCCGTGCCCAAGCAGCGGGGGATGCTGATCCTGAACGGCTTCCGG
GGTCACGCCACGGATTCGGTGAAGAGCTCCATGGAAAGCATGAACACTGACATGGTCATCATCC
CGGGGGGCCTGACCTCGCAGCTGCAGGTGTTAGATGTGGTGGTCTACAAACCGCTGAATGACAG
TGTCCGGGCGCAGTACTCCAATTGGCTTCTGGCGGGAAACCTGGCGCTGAGCCCCACTGGGAAC
GCCAAGAAGCCGCCCCTTGGCCTCTTTCTGGAGTGGGTCATGGTAGCGTGGAACAGCATCTCAA
GTGAATCCATTGTCCAAGGGTTCAAGAAGTGCCACATCTCCAGCAACTTGGAAGATGAAGATGA
CGTCCTATGGGAAATTGAGAGCGAGTTGCCAGGAGGAGGGGAGCCACCCAAAGAGTGTGACACG
GAGAGCCTGACAGAGAGCAACTGAGGGAAAGCCAAGCAATTGGAACTGTGTTTGGAACAGTTGG
GGAAGAAGGTCCTTAAGAAGATTCCTCATGGTGTGGATGCATGGAAGAAGGCCATGGGGCTCAA
ACAGTGCAGGTCTGGACAGCAGCCCAGGTCTGGACAGCAGCCCGAGCATCCCATCCTGGGCAAC
AGCTCAACTCCGCCCAACATCGATGAGGTGCCAGAAAAGTCTAGGACCCTTAATTCATCAGAGA
CATAGTTAGAAAAGAAACTACTTCTGCCTCATTTTCTTGTTTTAGAGATGACTTCATGCGTCCG
TTAAAGGAAACCTGTAAATAGGAATGAACAAAGGTATTTCCTGGAGATGAGACCATTTGTTCAG
CACCAACAAGAGACTTACATACGGGCCCAGCTCCACTGCTTTCCTTTCTGTGGAGAAAACCTCA
AGTAAAATGTTTTTTCTTCTGCCTTTAAAAATGCTTCCATCAGTAGAACCTGTCCCCACACAGG
TCAAGACTGCAGAGAAAGCTTTGTAGAAATGGTCATTTATGTACACCTGCTACTTACACATTGC
CTCTTTTTGGAAAAATGAGATACTGATGATCATAGCAAAATTCAGACGTACTGGCCTGGAGCCA
GCAGATGGATTTTCTATAGACAAACTAGGTTAGTGTGGAAGATACAGGTTAAAATAAACTATGC
TGTTTTATTTATCTTCCCAATCTGGTTGGCAGCTAAACTTTTTTAGGGTCTCATTTAATGGCCC
TGTTTTTCCTTATTATATTTAATGATCGGGTAGCATTTAGTACACAAGCTCTTCTGTTCTCAGG
CTGCCTGCTGGAGAAATCACCATAAATTATCTGCTGTCTACATGGTACAAGGCTCACTGACTCT
GATACTTGTTAATTTCTTTTTGTTTTGTTTTATCATAAGGGTGGTGAGAGGGCTTGAGCCTTTA
GCCACAGCTGTCTCAAGACTTCTGATCTTCTATCCTGCAGAAATAGGTGGGAGGCCTTTGAATT
TTTACACTATAGTAATTTGCATTCCCACATAAGTTGAGTGTTATGAAAACATTCCTTCAAAGCT
ATTTGTGCTACAAAAAATATGCCAGAACCTCATAGACAAAGCCATTGCTATAAATGTCATTCCA
ATGTCAAAGCTGGATAAAAGACTACCATAACCACTTTCCCTTCCAGCAGACCCAGCTCATTTAT
ATATTATGCTGTTCTTGGCATCTTGAAACACCTATTTCTACTCAGGTACTCATTTTCCTATTAG
TCATTCTTTTTAAAACCAGTTTTCCTCTAAGAGGGGAAATTTCACTTAACTTCTTATATCTGAA
TAACTTTGAATGTTTGTTTCCCCATTTGCTTTTACCTCTACTGTATTGTCATCTCAAATGGCAT
CTAAATCCAGTTGTGTTTCATTCCAAAAGTTTTCATTCCCTCCCATTTCACTTAATTTATCCTC
CACTGTTCTGGTTTCTGGTCTTTTCCTCTTTATGTCCTATTTTACTTGCTTAGGGAGCTTAAAG
GATTTTCTAAGACCTAATATTTGGTTCCTGCACTGGAGCCATAGTTATATTGCAGAGAAGAGTA
GAAAATGGGTTCAACTCCTGTTTCATTCCACCAACACCTTCTTGAGTCTCATCATCAGCTGATA
GATGATGCCTTACAGGTTGCATAGCACTGGAACTTGAATAGAGTAATGGCTCTACTGTCAGGGT
TTTTCTGGGCTCATTCTTCCACTGACTTAATTATGATCTATGCCTAACCGAGCCCTAGTACAAC
TATTTTGCAGAATGGCCTAGAGTTACTATAGCACATATTGAGACATAGTTGTACTCCCCAGTAG
ATAGGAACTGACTCCAACAATAAACTTTGATAATAAAGACAATAA

hide sequence

RefSeq Acc Id:

XM_021088569 ⟹ XP_020944228

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	84,188,993 - 84,203,168 (-)	NCBI

Sequence:

show sequence

CCACAGCCTACCCTCTCAATTTCGTCCTGAAGGAAGAGGAACAAGAAGAAGAGATTAGGAGCCG
GGAACTGGAGGATGGTCCCACAGATATGCAGAAGGTCCGAATCTGCTCAGAGGGCGGATGGAAA
ATGAAGAATCCGACCTGAAGCCCCCGGATTGGGCAAGCCCGATGCACACGGCCTCCCAGTTTCC
CCAGCCTCAGCACCTGGACGGCTTTGGCCTCCGTCTGCCTCGGGACATCACAGAGCTGCCCGAG
TGGGGCGAGGGGTACCCCTTCTACATGGCCATGGGCTTCCCTGGCTACGACCTCTCGGCCGACG
ACCTGGCCGGCAAGTTTCAGTTCAGCCGGGGCATGCGCCGTAGTTACGACGCTGGGTTCAAGCT
CATGGTGGTGGAGTATGCGGAGAGCACTAATAACTGCCAGGCGGCCAAGCAGTTTGGGGTGCTG
GAGAAAAACGTCCGCGACTGGCGCAAGGTGAAGCCACAGCTGCAGAATGCGCATGCCATGCGGC
GCGCCTTCCGGGGCCCCAAAAACGGGCGCTTTGCCCTTGTGGACCAACGTGTGGCTGAGTACGT
TCGATACATGCAGGCCAAGGGGGACCCCATCACTAGGGAGGCCATGCAGCTGAAAGCTCTCGAG
ATCGCCCAGGAAATGAACATTCCAGAGAAAGGGTTCAAGGCCAGCTTGGGTTGGTGCCGCAGAA
TGATGCGAAGGTATGACTTGTCTCTGCGGCATAAGGTGCCGGTGCCCCAGCAGCTGCCCGAAGA
CTTGACTGAGAAGCTTGTCACCTACCAGCGAAGTGTCCTGGCCCTGCGAAGGGCGCACGACTAC
CAGGTGGCTCAGATGGGAAATGCAGACGAGACGCCCATTTGCTTGGAGGTGCCCTCAAGGGTGA
CTGTGGACAACCAGGGTGAAAAGCCGGTCTTGGTCAAGACACCAGGCAGGGAGAAACTGAAAAT
CACGGCTATGCTTGGCGTCCTGGCTGATGGGAGGAAGTTACCTCCGTACATCATTCTGAGGGGT
ACGTACATCCCCCCCGGGAAGTTCCCCAGTGGCATGGAAATCCGCTGCCACCGGTACGGATGGA
TGACGGAGGACTTGATGCAGGACTGGTTGGAAGTGGTGTGGAGGCGGAGGACTGGCGCCGTGCC
CAAGCAGCGGGGGATGCTGATCCTGAACGGCTTCCGGGGTCACGCCACGGATTCGGTGAAGAGC
TCCATGGAAAGCATGAACACTGACATGGTCATCATCCCGGGGGGCCTGACCTCGCAGCTGCAGG
TGTTAGATGTGGTGGTCTACAAACCGCTGAATGACAGTGTCCGGGCGCAGTACTCCAATTGGCT
TCTGGCGGGAAACCTGGCGCTGAGCCCCACTGGGAACGCCAAGAAGCCGCCCCTTGGCCTCTTT
CTGGAGTGGGTCATGGTAGCGTGGAACAGCATCTCAAGTGAATCCATTGTCCAAGGGTTCAAGA
AGTGCCACATCTCCAGCAACTTGGAAGATGAAGATGACGTCCTATGGGAAATTGAGAGCGAGTT
GCCAGGAGGAGGGGAGCCACCCAAAGAGTGTGACACGGAGAGCCTGACAGAGAGCAACTGAGGG
AAAGCCAAGCAATTGGAACTGTGTTTGGAACAGTTGGGGAAGAAGGTCCTTAAGAAGATTCCTC
ATGGTGTGGATGCATGGAAGAAGGCCATGGGGCTCAAACAGTGCAGGTCTGGACAGCAGCCCAG
GTCTGGACAGCAGCCCGAGCATCCCATCCTGGGCAACAGCTCAACTCCGCCCAACATCGATGAG
GTGCCAGAAAAGTCTAGGACCCTTAATTCATCAGAGACATAGTTAGAAAAGAAACTACTTCTGC
CTCATTTTCTTGTTTTAGAGATGACTTCATGCGTCCGTTAAAGGAAACCTGTAAATAGGAATGA
ACAAAGGTATTTCCTGGAGATGAGACCATTTGTTCAGCACCAACAAGAGACTTACATACGGGCC
CAGCTCCACTGCTTTCCTTTCTGTGGAGAAAACCTCAAGTAAAATGTTTTTTCTTCTGCCTTTA
AAAATGCTTCCATCAGTAGAACCTGTCCCCACACAGGTCAAGACTGCAGAGAAAGCTTTGTAGA
AATGGTCATTTATGTACACCTGCTACTTACACATTGCCTCTTTTTGGAAAAATGAGATACTGAT
GATCATAGCAAAATTCAGACGTACTGGCCTGGAGCCAGCAGATGGATTTTCTATAGACAAACTA
GGTTAGTGTGGAAGATACAGGTTAAAATAAACTATGCTGTTTTATTTATCTTCCCAATCTGGTT
GGCAGCTAAACTTTTTTAGGGTCTCATTTAATGGCCCTGTTTTTCCTTATTATATTTAATGATC
GGGTAGCATTTAGTACACAAGCTCTTCTGTTCTCAGGCTGCCTGCTGGAGAAATCACCATAAAT
TATCTGCTGTCTACATGGTACAAGGCTCACTGACTCTGATACTTGTTAATTTCTTTTTGTTTTG
TTTTATCATAAGGGTGGTGAGAGGGCTTGAGCCTTTAGCCACAGCTGTCTCAAGACTTCTGATC
TTCTATCCTGCAGAAATAGGTGGGAGGCCTTTGAATTTTTACACTATAGTAATTTGCATTCCCA
CATAAGTTGAGTGTTATGAAAACATTCCTTCAAAGCTATTTGTGCTACAAAAAATATGCCAGAA
CCTCATAGACAAAGCCATTGCTATAAATGTCATTCCAATGTCAAAGCTGGATAAAAGACTACCA
TAACCACTTTCCCTTCCAGCAGACCCAGCTCATTTATATATTATGCTGTTCTTGGCATCTTGAA
ACACCTATTTCTACTCAGGTACTCATTTTCCTATTAGTCATTCTTTTTAAAACCAGTTTTCCTC
TAAGAGGGGAAATTTCACTTAACTTCTTATATCTGAATAACTTTGAATGTTTGTTTCCCCATTT
GCTTTTACCTCTACTGTATTGTCATCTCAAATGGCATCTAAATCCAGTTGTGTTTCATTCCAAA
AGTTTTCATTCCCTCCCATTTCACTTAATTTATCCTCCACTGTTCTGGTTTCTGGTCTTTTCCT
CTTTATGTCCTATTTTACTTGCTTAGGGAGCTTAAAGGATTTTCTAAGACCTAATATTTGGTTC
CTGCACTGGAGCCATAGTTATATTGCAGAGAAGAGTAGAAAATGGGTTCAACTCCTGTTTCATT
CCACCAACACCTTCTTGAGTCTCATCATCAGCTGATAGATGATGCCTTACAGGTTGCATAGCAC
TGGAACTTGAATAGAGTAATGGCTCTACTGTCAGGGTTTTTCTGGGCTCATTCTTCCACTGACT
TAATTATGATCTATGCCTAACCGAGCCCTAGTACAACTATTTTGCAGAATGGCCTAGAGTTACT
ATAGCACATATTGAGACATAGTTGTACTCCCCAGTAGATAGGAACTGACTCCAACAATAAACTT
TGATAATAAAGACAATAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001231188	(Get FASTA)	NCBI Sequence Viewer
	XP_020944225	(Get FASTA)	NCBI Sequence Viewer
	XP_020944226	(Get FASTA)	NCBI Sequence Viewer
	XP_020944227	(Get FASTA)	NCBI Sequence Viewer
	XP_020944228	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	ACJ38129	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000057242
	ENSSSCP00000057242.1
	ENSSSCP00005017659.1
	ENSSSCP00005017696.1
	ENSSSCP00015022076.1
	ENSSSCP00025019157.1
	ENSSSCP00025019185.1
	ENSSSCP00030003420.1
	ENSSSCP00035024004.1
	ENSSSCP00035024005.1
	ENSSSCP00040000353.1
	ENSSSCP00040000360.1
	ENSSSCP00045028259.1
	ENSSSCP00045028317.1
	ENSSSCP00050027189.1
	ENSSSCP00050027196.1
	ENSSSCP00055012098.1
	ENSSSCP00055012140.1
	ENSSSCP00060042591.1
	ENSSSCP00060042615.1
	ENSSSCP00065033313.1
	ENSSSCP00065033315.1
	ENSSSCP00070040104.1
	ENSSSCP00070040106.1

RefSeq Acc Id:	XP_020944225 ⟸ XM_021088566
- Peptide Label:	isoform X1
- UniProtKB:	A0A4X1VAN0 (UniProtKB/TrEMBL), F8J1Q3 (UniProtKB/TrEMBL), F1S247 (UniProtKB/TrEMBL), A0A8D1A566 (UniProtKB/TrEMBL), A0A8D1TXV8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MESTAYPLNFVLKEEEQEEEIRSRELEDGPTDMQKVRICSEGGWVPALFDEVAIYFSDEEWEVL TEQQKALYREVMRMNYETVLSLEFPFPKPDMITRLEGEEESQNSDEWQLQGGTFAENEESDLKP PDWASPMHTASQFPQPQHLDGFGLRLPRDITELPEWGEGYPFYMAMGFPGYDLSADDLAGKFQF SRGMRRSYDAGFKLMVVEYAESTNNCQAAKQFGVLEKNVRDWRKVKPQLQNAHAMRRAFRGPKN GRFALVDQRVAEYVRYMQAKGDPITREAMQLKALEIAQEMNIPEKGFKASLGWCRRMMRRYDLS LRHKVPVPQQLPEDLTEKLVTYQRSVLALRRAHDYQVAQMGNADETPICLEVPSRVTVDNQGEK PVLVKTPGREKLKITAMLGVLADGRKLPPYIILRGTYIPPGKFPSGMEIRCHRYGWMTEDLMQD WLEVVWRRRTGAVPKQRGMLILNGFRGHATDSVKSSMESMNTDMVIIPGGLTSQLQVLDVVVYK PLNDSVRAQYSNWLLAGNLALSPTGNAKKPPLGLFLEWVMVAWNSISSESIVQGFKKCHISSNL EDEDDVLWEIESELPGGGEPPKECDTESLTESN hide sequence

RefSeq Acc Id:	XP_020944227 ⟸ XM_021088568
- Peptide Label:	isoform X2
- UniProtKB:	A0A8D1WSA9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEFPFPKPDMITRLEGEEESQNSDEWQLQGGTFAENEESDLKPPDWASPMHTASQFPQPQHLDG FGLRLPRDITELPEWGEGYPFYMAMGFPGYDLSADDLAGKFQFSRGMRRSYDAGFKLMVVEYAE STNNCQAAKQFGVLEKNVRDWRKVKPQLQNAHAMRRAFRGPKNGRFALVDQRVAEYVRYMQAKG DPITREAMQLKALEIAQEMNIPEKGFKASLGWCRRMMRRYDLSLRHKVPVPQQLPEDLTEKLVT YQRSVLALRRAHDYQVAQMGNADETPICLEVPSRVTVDNQGEKPVLVKTPGREKLKITAMLGVL ADGRKLPPYIILRGTYIPPGKFPSGMEIRCHRYGWMTEDLMQDWLEVVWRRRTGAVPKQRGMLI LNGFRGHATDSVKSSMESMNTDMVIIPGGLTSQLQVLDVVVYKPLNDSVRAQYSNWLLAGNLAL SPTGNAKKPPLGLFLEWVMVAWNSISSESIVQGFKKCHISSNLEDEDDVLWEIESELPGGGEPP KECDTESLTESN hide sequence

RefSeq Acc Id:	XP_020944226 ⟸ XM_021088567
- Peptide Label:	isoform X1
- UniProtKB:	A0A4X1VAN0 (UniProtKB/TrEMBL), F8J1Q3 (UniProtKB/TrEMBL), F1S247 (UniProtKB/TrEMBL), A0A8D1A566 (UniProtKB/TrEMBL), A0A8D1TXV8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MESTAYPLNFVLKEEEQEEEIRSRELEDGPTDMQKVRICSEGGWVPALFDEVAIYFSDEEWEVL TEQQKALYREVMRMNYETVLSLEFPFPKPDMITRLEGEEESQNSDEWQLQGGTFAENEESDLKP PDWASPMHTASQFPQPQHLDGFGLRLPRDITELPEWGEGYPFYMAMGFPGYDLSADDLAGKFQF SRGMRRSYDAGFKLMVVEYAESTNNCQAAKQFGVLEKNVRDWRKVKPQLQNAHAMRRAFRGPKN GRFALVDQRVAEYVRYMQAKGDPITREAMQLKALEIAQEMNIPEKGFKASLGWCRRMMRRYDLS LRHKVPVPQQLPEDLTEKLVTYQRSVLALRRAHDYQVAQMGNADETPICLEVPSRVTVDNQGEK PVLVKTPGREKLKITAMLGVLADGRKLPPYIILRGTYIPPGKFPSGMEIRCHRYGWMTEDLMQD WLEVVWRRRTGAVPKQRGMLILNGFRGHATDSVKSSMESMNTDMVIIPGGLTSQLQVLDVVVYK PLNDSVRAQYSNWLLAGNLALSPTGNAKKPPLGLFLEWVMVAWNSISSESIVQGFKKCHISSNL EDEDDVLWEIESELPGGGEPPKECDTESLTESN hide sequence

RefSeq Acc Id:	XP_020944228 ⟸ XM_021088569
- Peptide Label:	isoform X3
- UniProtKB:	A0A8D1WSA9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MENEESDLKPPDWASPMHTASQFPQPQHLDGFGLRLPRDITELPEWGEGYPFYMAMGFPGYDLS ADDLAGKFQFSRGMRRSYDAGFKLMVVEYAESTNNCQAAKQFGVLEKNVRDWRKVKPQLQNAHA MRRAFRGPKNGRFALVDQRVAEYVRYMQAKGDPITREAMQLKALEIAQEMNIPEKGFKASLGWC RRMMRRYDLSLRHKVPVPQQLPEDLTEKLVTYQRSVLALRRAHDYQVAQMGNADETPICLEVPS RVTVDNQGEKPVLVKTPGREKLKITAMLGVLADGRKLPPYIILRGTYIPPGKFPSGMEIRCHRY GWMTEDLMQDWLEVVWRRRTGAVPKQRGMLILNGFRGHATDSVKSSMESMNTDMVIIPGGLTSQ LQVLDVVVYKPLNDSVRAQYSNWLLAGNLALSPTGNAKKPPLGLFLEWVMVAWNSISSESIVQG FKKCHISSNLEDEDDVLWEIESELPGGGEPPKECDTESLTESN hide sequence

RefSeq Acc Id:

NP_001231188 ⟸ NM_001244259

- UniProtKB:

F1S247 (UniProtKB/TrEMBL), A0A4X1VAN0 (UniProtKB/TrEMBL), F8J1Q3 (UniProtKB/TrEMBL), A0A8D1A566 (UniProtKB/TrEMBL), A0A8D1TXV8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MESTAYPLNFVLKEEEQEEEIRSRELEDGPTDMQKVRICSEGGWVPALFDEVAIYFSDEEWEVL
TEQQKALYREVMRMNYETVLSLEFPFPKPDMITRLEGEEESQNSDEWQLQGGTFAENEESDLKP
PDWASPMHTASQFPQPQHLDGFGLRLPRDITELPEWGEGYPFYMAMGFPGYDLSADDLAGKFQF
SRGMRRSYDAGFKLMVVEYAESTNNCQAAKQFGVLEKNVRDWRKVKPQLQNAHAMRRAFRGPKN
GRFALVDQRVAEYVRYMQAKGDPITREAMQLKALEIAQEMNIPEKGFKASLGWCRRMMRRYDLS
LRHKVPVPQQLPEDLTEKLVTYQRSVLALRRAHDYQVAQMGNADETPICLEVPSRVTVDNQGEK
PVLVKTPGREKLKITAMLGVLADGRKLPPYIILRGTYIPPGKFPSGMEIRCHRYGWMTEDLMQD
WLEVVWRRRTGAVPKQRGMLILNGFRGHATDSVKSSMESMNTDMVIIPGGLTSQLQVLDVVVYK
PLNDSVRAQYSNWLLAGNLALSPTGNAKKPPLGLFLEWVMVAWNSISSESIVQGFKKCHISSNL
EDEDDVLWEIESELPGGGEPPKECDTESLTESN

hide sequence

RefSeq Acc Id:

ENSSSCP00000057242 ⟸ ENSSSCT00000051800

Protein Domains

HTH CENPB-type KRAB KRAB-related

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000006319	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005018357	UniProtKB/TrEMBL
	ENSSSCG00015041195	UniProtKB/TrEMBL
	ENSSSCG00025033019	UniProtKB/TrEMBL
	ENSSSCG00030005658	UniProtKB/TrEMBL
	ENSSSCG00035044922	UniProtKB/TrEMBL
	ENSSSCG00040001169	UniProtKB/TrEMBL
	ENSSSCG00045023760	UniProtKB/TrEMBL
	ENSSSCG00050046524	UniProtKB/TrEMBL
	ENSSSCG00055007881	UniProtKB/TrEMBL
	ENSSSCG00060071915	UniProtKB/TrEMBL
	ENSSSCG00065055910	UniProtKB/TrEMBL
	ENSSSCG00070023760	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000051800	ENTREZGENE
	ENSSSCT00000051800.2	UniProtKB/TrEMBL
	ENSSSCT00005028944.1	UniProtKB/TrEMBL
	ENSSSCT00005029000.1	UniProtKB/TrEMBL
	ENSSSCT00015055032.1	UniProtKB/TrEMBL
	ENSSSCT00025044965.1	UniProtKB/TrEMBL
	ENSSSCT00025045032.1	UniProtKB/TrEMBL
	ENSSSCT00030007707.1	UniProtKB/TrEMBL
	ENSSSCT00035059697.1	UniProtKB/TrEMBL
	ENSSSCT00035059702.1	UniProtKB/TrEMBL
	ENSSSCT00040001405.1	UniProtKB/TrEMBL
	ENSSSCT00040001435.1	UniProtKB/TrEMBL
	ENSSSCT00045040616.1	UniProtKB/TrEMBL
	ENSSSCT00045040718.1	UniProtKB/TrEMBL
	ENSSSCT00050063307.1	UniProtKB/TrEMBL
	ENSSSCT00050063320.1	UniProtKB/TrEMBL
	ENSSSCT00055015392.1	UniProtKB/TrEMBL
	ENSSSCT00055015448.1	UniProtKB/TrEMBL
	ENSSSCT00060098254.1	UniProtKB/TrEMBL
	ENSSSCT00060098302.1	UniProtKB/TrEMBL
	ENSSSCT00065076562.1	UniProtKB/TrEMBL
	ENSSSCT00065076572.1	UniProtKB/TrEMBL
	ENSSSCT00070047514.1	UniProtKB/TrEMBL
	ENSSSCT00070047516.1	UniProtKB/TrEMBL
Gene3D-CATH	6.10.140.140	UniProtKB/TrEMBL
	Homeodomain-like	UniProtKB/TrEMBL
InterPro	Brinker_DNA-bd	UniProtKB/TrEMBL
	DDE_SF_endonuclease_dom	UniProtKB/TrEMBL
	Homeobox-like_sf	UniProtKB/TrEMBL
	HTH_CenpB_DNA-bd_dom	UniProtKB/TrEMBL
	KRAB	UniProtKB/TrEMBL
	KRAB_dom_sf	UniProtKB/TrEMBL
	Krueppel-associated_box-rel	UniProtKB/TrEMBL
KEGG Report	ssc:100155419	UniProtKB/TrEMBL
NCBI Gene	POGK	ENTREZGENE
PANTHER	POGO TRANSPOSABLE ELEMENT WITH KRAB DOMAIN	UniProtKB/TrEMBL
	TRANSPOSON	UniProtKB/TrEMBL
Pfam	BrkDBD	UniProtKB/TrEMBL
	DDE_1	UniProtKB/TrEMBL
	HTH_Tnp_Tc5	UniProtKB/TrEMBL
	KRAB	UniProtKB/TrEMBL
PROSITE	HTH_CENPB	UniProtKB/TrEMBL
	KRAB	UniProtKB/TrEMBL
	KRAB_RELATED	UniProtKB/TrEMBL
SMART	CENPB	UniProtKB/TrEMBL
	KRAB	UniProtKB/TrEMBL
Superfamily-SCOP	SSF109640	UniProtKB/TrEMBL
	SSF46689	UniProtKB/TrEMBL
UniProt	A0A4X1VAN0	ENTREZGENE
	A0A8D0J348_PIG	UniProtKB/TrEMBL
	A0A8D0VBG8_PIG	UniProtKB/TrEMBL
	A0A8D1A566	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1TXV8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1WSA9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1ZA03_PIG	UniProtKB/TrEMBL
	F1S247	ENTREZGENE, UniProtKB/TrEMBL
	F8J1Q3	ENTREZGENE
UniProt Secondary	A0A4X1VAN0	UniProtKB/TrEMBL
	F8J1Q3	UniProtKB/TrEMBL
VGNC ID	VGNC:91622	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar