Symbol:
Rnft1
Name:
ring finger protein, transmembrane 1
RGD ID:
18914909
Description:
ENCODES a protein that exhibits ubiquitin binding (ortholog); INVOLVED IN protein autoubiquitination (ortholog); ASSOCIATED WITH Joubert syndrome 1 (ortholog); FOUND IN endomembrane system (inferred); endoplasmic reticulum (inferred); membrane (inferred)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
RING finger and transmembrane domain-containing protein 1
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Rnft1
RNFT1 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 17 59,952,240 - 59,964,740 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 17 59,952,240 - 59,964,761 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 17 58,029,601 - 58,042,101 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 17 55,384,505 - 55,396,899 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Celera 17 54,493,237 - 54,505,631 (-) NCBI Celera Cytogenetic Map 17 q23.1 NCBI HuRef 17 53,402,180 - 53,414,575 (-) NCBI HuRef CHM1_1 17 58,093,740 - 58,106,136 (-) NCBI CHM1_1 T2T-CHM13v2.0 17 60,820,980 - 60,833,476 (-) NCBI T2T-CHM13v2.0
Rnft1 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 11 86,375,483 - 86,389,833 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 11 86,375,483 - 86,389,851 (+) Ensembl GRCm39 Ensembl GRCm38 11 86,484,657 - 86,499,007 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 11 86,484,657 - 86,499,025 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 11 86,298,159 - 86,312,509 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 11 86,300,852 - 86,315,202 (+) NCBI MGSCv36 mm8 Celera 11 96,100,673 - 96,115,091 (+) NCBI Celera Cytogenetic Map 11 C NCBI cM Map 11 51.82 NCBI
Rnft1 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 10 71,807,403 - 71,821,132 (+) NCBI GRCr8 mRatBN7.2 10 71,310,052 - 71,322,507 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 10 71,310,104 - 71,323,778 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 10 75,929,989 - 75,941,112 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 10 75,434,797 - 75,445,920 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 10 70,899,410 - 70,910,533 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 10 73,807,455 - 73,821,178 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 10 73,809,157 - 73,817,982 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 10 76,278,401 - 76,292,132 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 10 76,640,223 - 76,651,484 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 Celera 10 70,231,791 - 70,245,501 (+) NCBI Celera Cytogenetic Map 10 q26 NCBI
Rnft1 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955451 3,164,845 - 3,178,991 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955451 3,165,316 - 3,178,991 (+) NCBI ChiLan1.0 ChiLan1.0
RNFT1 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 19 76,113,925 - 76,126,370 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 17 80,924,130 - 80,937,015 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 17 54,016,689 - 54,029,100 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 17 58,858,294 - 58,869,908 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 17 58,858,416 - 58,869,908 (-) Ensembl panpan1.1 panPan2
RNFT1 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 9 34,430,119 - 34,442,760 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 9 34,335,554 - 34,442,374 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 9 33,662,099 - 33,674,787 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 9 35,241,103 - 35,253,845 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 9 35,241,110 - 35,253,442 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 9 34,024,780 - 34,037,509 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 9 34,309,749 - 34,322,468 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 9 34,395,977 - 34,408,708 (-) NCBI UU_Cfam_GSD_1.0
Rnft1 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405602 33,635,983 - 33,648,362 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936490 3,426,762 - 3,438,900 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936490 3,426,692 - 3,439,179 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
RNFT1 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 12 36,162,444 - 36,174,851 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 12 36,162,438 - 36,175,135 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 12 37,534,630 - 37,542,161 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
RNFT1 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 16 33,483,167 - 33,496,608 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 16 33,483,194 - 33,497,325 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666077 4,268,841 - 4,282,313 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
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Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSHGLT00000012673 ⟹ ENSHGLP00000012537
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla_female_1.0 Ensembl NW_004624871 1,707,509 - 1,721,078 (-) Ensembl
RefSeq Acc Id:
XM_004870376 ⟹ XP_004870433
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla 1.0 NW_004624871 1,707,570 - 1,720,687 (-) NCBI
RefSeq Acc Id:
XM_013067699 ⟹ XP_012923153
Type:
CODING
Position:
Naked Mole-Rat Assembly Chr Position (strand) Source HetGla 1.0 NW_004624871 1,707,570 - 1,721,026 (-) NCBI
RefSeq Acc Id:
XP_012923153 ⟸ XM_013067699
- UniProtKB:
A0AAX6QP64 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_004870433 ⟸ XM_004870376
- UniProtKB:
A0AAX6QP64 (UniProtKB/TrEMBL)
Ensembl Acc Id:
ENSHGLP00000012537 ⟸ ENSHGLT00000012673
