RNFT1 (ring finger protein, transmembrane 1)

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Gene: RNFT1 (ring finger protein, transmembrane 1) Canis lupus familiaris

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Symbol:

RNFT1

Name:

ring finger protein, transmembrane 1

RGD ID:

12376260

Description:

ENCODES a protein that exhibits ubiquitin binding (ortholog); INVOLVED IN protein autoubiquitination (ortholog); ASSOCIATED WITH Joubert syndrome 1 (ortholog); FOUND IN endoplasmic reticulum (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

E3 ubiquitin-protein ligase RNFT1; RING finger and transmembrane domain-containing protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	34,430,119 - 34,442,760 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	34,335,554 - 34,442,374 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	33,662,099 - 33,674,787 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	35,241,103 - 35,253,845 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	35,241,110 - 35,253,442 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	34,024,780 - 34,037,509 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	34,309,749 - 34,322,468 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	34,395,977 - 34,408,708 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Joubert syndrome 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of ERAD pathway (IEA)

protein autoubiquitination (ISO)

Cellular Component

endomembrane system (IEA)

endoplasmic reticulum (ISO)

membrane (IEA)

Molecular Function

metal ion binding (IEA)

transferase activity (IEA)

ubiquitin binding (ISO)

ubiquitin protein ligase activity (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

RNFT1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	34,430,119 - 34,442,760 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	34,335,554 - 34,442,374 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	33,662,099 - 33,674,787 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	35,241,103 - 35,253,845 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	35,241,110 - 35,253,442 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	34,024,780 - 34,037,509 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	34,309,749 - 34,322,468 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	34,395,977 - 34,408,708 (-)	NCBI		UU_Cfam_GSD_1.0

RNFT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	59,952,240 - 59,964,740 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	59,952,240 - 59,964,761 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	58,029,601 - 58,042,101 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	55,384,505 - 55,396,899 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	54,493,237 - 54,505,631 (-)	NCBI		Celera
Cytogenetic Map	17	q23.1	NCBI
HuRef	17	53,402,180 - 53,414,575 (-)	NCBI		HuRef
CHM1_1	17	58,093,740 - 58,106,136 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	60,820,980 - 60,833,476 (-)	NCBI		T2T-CHM13v2.0

Rnft1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	86,375,483 - 86,389,833 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	86,375,483 - 86,389,851 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	86,484,657 - 86,499,007 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	86,484,657 - 86,499,025 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	86,298,159 - 86,312,509 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	86,300,852 - 86,315,202 (+)	NCBI		MGSCv36	mm8
Celera	11	96,100,673 - 96,115,091 (+)	NCBI		Celera
Cytogenetic Map	11	C	NCBI
cM Map	11	51.82	NCBI

Rnft1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	71,807,403 - 71,821,132 (+)	NCBI		GRCr8
mRatBN7.2	10	71,310,052 - 71,322,507 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	71,310,104 - 71,323,778 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	75,929,989 - 75,941,112 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	75,434,797 - 75,445,920 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	70,899,410 - 70,910,533 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	73,807,455 - 73,821,178 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	73,809,157 - 73,817,982 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	76,278,401 - 76,292,132 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	76,640,223 - 76,651,484 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	70,231,791 - 70,245,501 (+)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

Rnft1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	3,164,845 - 3,178,991 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	3,165,316 - 3,178,991 (+)	NCBI	ChiLan1.0	ChiLan1.0

RNFT1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	76,113,925 - 76,126,370 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	80,924,130 - 80,937,015 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	54,016,689 - 54,029,100 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	58,858,294 - 58,869,908 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	58,858,416 - 58,869,908 (-)	Ensembl	panpan1.1		panPan2

Rnft1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	33,635,983 - 33,648,362 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	3,426,762 - 3,438,900 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	3,426,692 - 3,439,179 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RNFT1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	36,162,444 - 36,174,851 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	36,162,438 - 36,175,135 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	37,534,630 - 37,542,161 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RNFT1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	33,483,167 - 33,496,608 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	33,483,194 - 33,497,325 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	4,268,841 - 4,282,313 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rnft1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624871	1,707,509 - 1,721,078 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624871	1,707,570 - 1,721,026 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in RNFT1
125 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_014116723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022423247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038486151	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038486152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038547970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038547971	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038611935	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038611936	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038677181	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038677182	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000094	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000043037 ⟹ ENSCAFP00000041394

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	9	34,335,554 - 34,442,374 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00000071007 ⟹ ENSCAFP00000044052

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	9	34,335,554 - 34,442,374 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845046601 ⟹ ENSCAFP00845036587

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	9	35,241,110 - 35,253,442 (-)	Ensembl

RefSeq Acc Id:

XM_014116723 ⟹ XP_013972198

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	9	34,430,119 - 34,442,402 (-)	NCBI
Dog10K_Boxer_Tasha	9	33,662,099 - 33,674,387 (-)	NCBI

Sequence:

show sequence

GCCGCCGCCGCGCTGGGCCGGAGTTGCTGGTAGTGAGTGGGGTTTGAAGGTGATGGCCTTGACT
AAAGGCCTCCAGGCGGGGTCTCTCGCTGTTCCTGCAGTCGCTGCCGCGGCCTCCGTCCGCTCTT
CGTCATGAGAGGAGATAGAGCCCTGAAGCAAAGAAATCTGGATCACAGAAAAAGTATTCAAGGG
TCATGCAAGCCAACTGTAGTCAACTACACAGCCCTCCAGGAGCTGCAGGCAATGAAGATGCCTC
AGCTACCCAATGTGTGCATACAAGATTGACAGAAGGTTCTTGTCTTCATTCTGGAGATATTCAT
ATCCAGATAAACTCCATACCTAAAGAATGTGCTGAAAATCCAACCTCCAGAAATATAAGGTCAG
GTGTCCATAGCTGTACTCATGGATGTATACATAGTCGCTTACGGAGTCACTCCTACAATGAAGC
AAGGCAGCCTGATGATACTGCCACAGAGTCTGGAGATCATGGTAGTAGCTCCTTCTCAGAATTC
CGATATCTCTTCAAGTGGTTGCACAAAAGTCTTCCATATATTTTGATTCTGGGTGTCAAACTTG
TTATGCAGCATATAACAGGAATTTCTCTTGGAATTGGGCTGCTTACAACATTTATGTATGCAAA
CAAAAGCATTGTAAATCAGGTTTTTCTAAGAGAAAGGTGCTCAAAGATTCAGTGTGCTTGGTTA
CTGGTATTCTTAGCAGGATCTTCTGTTCTTTTATATTACACCTTTCATTCTCAGTCACTTTATT
ACAGCTTAATTTTTTTAAATCCTACATTGGACCATTCAAGCTTCTGGGAAGTACTTTGGATTGT
TGGAATTACAGACTTCATTCTGAAATTCCTCTTCATGGGCTTAAAATGCCTTATTTTGTTGATG
CCTTCTTTCATCATGCCTTTTAAATCCAAGGGTTACTGGTATATGCTTTTAGAAGAATCATGCC
AGTATTACCGAACTTTTGTTCCCATACCAGTTTGGTTTCGTTATCTTATAAGCTATGGGGAGTT
TGGTAATGTAACTAGATGGAGTCTTGGGATATTGCTGGCTTTACTCTACCTCATACTAAAACTT
TTGGATTTCTTTGGAAATCTGAGAACTTTCCGACGGGTTTTGCAAATATTTTTTACACGACCAA
GTTATGGAGTAGCTGCCAGCAAGAGACAGTGTTCAGATGTGGATGACATTTGTTCAGTATGTCA
AGCTGAATTTCAAAAACCAATTCTGCTCATCTGTCAGCATATATTTTGTGAAGAATGCATTACC
TTATGGTTTAACAGAGAGAAAACATGTCCACTGTGCCGAACTGTGATCTCAGACCATATAAACA
AATGGAAAGATGGAGCCACTTCATCCCACTTTCAAATATATTAAGTTGTATAAACTATAAAGGC
CTCAAAACACTAATTTCATTTGGCTACACTGACTATTGATAAATAAAGACATTAGAATGGGTTT
TTGGGACTAGAAGTTAAAGAAAATGTTTCCAAATGGTTTTAGATTACTATAGTAAGACTTAAGT
GTGTAGTCTATTTTATCAAAAGATTAAATGAAAGAACCTTATGTTTTAAGAAATATAGAAGTAA
TGTTCAACCTAATGCATATGAACATTTATTCTGTCCTAATTATTTGACAGGTGGTTGCAGTGTT
AAATTGTGACTGTTTTCTCATTGTTACCAAAACAGCTATTGGGTAACTGAAACTAGTGGTTTTA
GAGGAACTCAGGTATTCTTTTCCTGACATTGTTTTCAGAATAAAGAATATTTTTCATAATATTT
TAAGATACACATTATCTGAAAGTAGAATTTACTTTAGCATTGACTTTTGTAGTTCCCATTCTAA
AAATTCTTAAAATTTTCATAAAGTTTGTATTTAAAATGGAAGTTCTAAATGCTATTTTTTATCT
GTAAACAGATTTTCTAAGTGAAGATTAATTTACTGAGGATGATATATTTTAATATTGTATTGTT
TTCTGTAGTATGATTAGCAATCAATTGAGAAGATTTAAATTGTTTGTAGACCTCAGACATACAA
TCCTGCCGTCAGCTTTAATGTACATAATCTTGCTTTTTGTATAGTGCCATGAACTATCTTTAAC
TATTAAAATAATTCACATGGATTACAAACA

hide sequence

RefSeq Acc Id:

XM_022423247 ⟹ XP_022278955

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	9	34,430,119 - 34,442,760 (-)	NCBI
Dog10K_Boxer_Tasha	9	33,662,099 - 33,674,787 (-)	NCBI

Sequence:

show sequence

CCAGGGTGGGGGTCAGCCTCCACACGACAGGCGCCCGGGATCCTGCGGGACAAGCCAGGGCAGG
CCTGAGACAACCCCTCACGTCAGGCCTCTCCTCTGAGGGCAGCCGAAACATTTTTAACCTCCAA
ACGTTCAGGAGATAGAGCCCTGAAGCAAAGAAATCTGGATCACAGAAAAAGTATTCAAGGGTCA
TGCAAGCCAACTGTAGTCAACTACACAGCCCTCCAGGAGCTGCAGGCAATGAAGATGCCTCAGC
TACCCAATGTGTGCATACAAGATTGACAGAAGGTTCTTGTCTTCATTCTGGAGATATTCATATC
CAGATAAACTCCATACCTAAAGAATGTGCTGAAAATCCAACCTCCAGAAATATAAGGTCAGGTG
TCCATAGCTGTACTCATGGATGTATACATAGTCGCTTACGGAGTCACTCCTACAATGAAGCAAG
GCAGCCTGATGATACTGCCACAGAGTCTGGAGATCATGGTAGTAGCTCCTTCTCAGAATTCCGA
TATCTCTTCAAGTGGTTGCACAAAAGTCTTCCATATATTTTGATTCTGGGTGTCAAACTTGTTA
TGCAGCATATAACAGGAATTTCTCTTGGAATTGGGCTGCTTACAACATTTATGTATGCAAACAA
AAGCATTGTAAATCAGGTTTTTCTAAGAGAAAGGTGCTCAAAGATTCAGTGTGCTTGGTTACTG
GTATTCTTAGCAGGATCTTCTGTTCTTTTATATTACACCTTTCATTCTCAGTCACTTTATTACA
GCTTAATTTTTTTAAATCCTACATTGGACCATTCAAGCTTCTGGGAAGTACTTTGGATTGTTGG
AATTACAGACTTCATTCTGAAATTCCTCTTCATGGGCTTAAAATGCCTTATTTTGTTGATGCCT
TCTTTCATCATGCCTTTTAAATCCAAGGGTTACTGGTATATGCTTTTAGAAGAATCATGCCAGT
ATTACCGAACTTTTGTTCCCATACCAGTTTGGTTTCGTTATCTTATAAGCTATGGGGAGTTTGG
TAATGTAACTAGATGGAGTCTTGGGATATTGCTGGCTTTACTCTACCTCATACTAAAACTTTTG
GATTTCTTTGGAAATCTGAGAACTTTCCGACGGGTTTTGCAAATATTTTTTACACGACCAAGTT
ATGGAGTAGCTGCCAGCAAGAGACAGTGTTCAGATGTGGATGACATTTGTTCAGTATGTCAAGC
TGAATTTCAAAAACCAATTCTGCTCATCTGTCAGCATATATTTTGTGAAGAATGCATTACCTTA
TGGTTTAACAGAGAGAAAACATGTCCACTGTGCCGAACTGTGATCTCAGACCATATAAACAAAT
GGAAAGATGGAGCCACTTCATCCCACTTTCAAATATATTAAGTTGTATAAACTATAAAGGCCTC
AAAACACTAATTTCATTTGGCTACACTGACTATTGATAAATAAAGACATTAGAATGGGTTTTTG
GGACTAGAAGTTAAAGAAAATGTTTCCAAATGGTTTTAGATTACTATAGTAAGACTTAAGTGTG
TAGTCTATTTTATCAAAAGATTAAATGAAAGAACCTTATGTTTTAAGAAATATAGAAGTAATGT
TCAACCTAATGCATATGAACATTTATTCTGTCCTAATTATTTGACAGGTGGTTGCAGTGTTAAA
TTGTGACTGTTTTCTCATTGTTACCAAAACAGCTATTGGGTAACTGAAACTAGTGGTTTTAGAG
GAACTCAGGTATTCTTTTCCTGACATTGTTTTCAGAATAAAGAATATTTTTCATAATATTTTAA
GATACACATTATCTGAAAGTAGAATTTACTTTAGCATTGACTTTTGTAGTTCCCATTCTAAAAA
TTCTTAAAATTTTCATAAAGTTTGTATTTAAAATGGAAGTTCTAAATGCTATTTTTTATCTGTA
AACAGATTTTCTAAGTGAAGATTAATTTACTGAGGATGATATATTTTAATATTGTATTGTTTTC
TGTAGTATGATTAGCAATCAATTGAGAAGATTTAAATTGTTTGTAGACCTCAGACATACAATCC
TGCCGTCAGCTTTAATGTACATAATCTTGCTTTTTGTATAGTGCCATGAACTATCTTTAACTAT
TAAAATAATTCACATGGATTACAAACA

hide sequence

RefSeq Acc Id:

XM_038486151 ⟹ XP_038342079

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	9	34,024,780 - 34,037,109 (-)	NCBI

RefSeq Acc Id:

XM_038486152 ⟹ XP_038342080

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	9	34,024,780 - 34,037,509 (-)	NCBI

RefSeq Acc Id:

XM_038547970 ⟹ XP_038403898

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	9	34,395,977 - 34,408,308 (-)	NCBI

RefSeq Acc Id:

XM_038547971 ⟹ XP_038403899

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	9	34,395,977 - 34,408,708 (-)	NCBI

RefSeq Acc Id:

XM_038611935 ⟹ XP_038467863

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	9	34,309,749 - 34,322,065 (-)	NCBI

RefSeq Acc Id:

XM_038611936 ⟹ XP_038467864

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	9	34,309,749 - 34,322,468 (-)	NCBI

RefSeq Acc Id:

XM_038677181 ⟹ XP_038533109

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	9	35,241,103 - 35,253,445 (-)	NCBI

RefSeq Acc Id:

XM_038677182 ⟹ XP_038533110

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	9	35,241,103 - 35,253,845 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_013972198	(Get FASTA)	NCBI Sequence Viewer
	XP_022278955	(Get FASTA)	NCBI Sequence Viewer
	XP_038342079	(Get FASTA)	NCBI Sequence Viewer
	XP_038342080	(Get FASTA)	NCBI Sequence Viewer
	XP_038403898	(Get FASTA)	NCBI Sequence Viewer
	XP_038403899	(Get FASTA)	NCBI Sequence Viewer
	XP_038467863	(Get FASTA)	NCBI Sequence Viewer
	XP_038467864	(Get FASTA)	NCBI Sequence Viewer
	XP_038533109	(Get FASTA)	NCBI Sequence Viewer
	XP_038533110	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000041394.1
	ENSCAFP00030040764.1
	ENSCAFP00040002739.1
	ENSCAFP00845036587
	ENSCAFP00845036587.1

RefSeq Acc Id:

XP_013972198 ⟸ XM_014116723

- UniProtKB:

A0A8C0PJJ5 (UniProtKB/TrEMBL), A0A8C0JM56 (UniProtKB/TrEMBL), A0A8I3PSS3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MQANCSQLHSPPGAAGNEDASATQCVHTRLTEGSCLHSGDIHIQINSIPKECAENPTSRNIRSG
VHSCTHGCIHSRLRSHSYNEARQPDDTATESGDHGSSSFSEFRYLFKWLHKSLPYILILGVKLV
MQHITGISLGIGLLTTFMYANKSIVNQVFLRERCSKIQCAWLLVFLAGSSVLLYYTFHSQSLYY
SLIFLNPTLDHSSFWEVLWIVGITDFILKFLFMGLKCLILLMPSFIMPFKSKGYWYMLLEESCQ
YYRTFVPIPVWFRYLISYGEFGNVTRWSLGILLALLYLILKLLDFFGNLRTFRRVLQIFFTRPS
YGVAASKRQCSDVDDICSVCQAEFQKPILLICQHIFCEECITLWFNREKTCPLCRTVISDHINK
WKDGATSSHFQIY

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RefSeq Acc Id:

XP_022278955 ⟸ XM_022423247

- UniProtKB:

A0A8C0PJJ5 (UniProtKB/TrEMBL), A0A8C0JM56 (UniProtKB/TrEMBL), A0A8I3PSS3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MQANCSQLHSPPGAAGNEDASATQCVHTRLTEGSCLHSGDIHIQINSIPKECAENPTSRNIRSG
VHSCTHGCIHSRLRSHSYNEARQPDDTATESGDHGSSSFSEFRYLFKWLHKSLPYILILGVKLV
MQHITGISLGIGLLTTFMYANKSIVNQVFLRERCSKIQCAWLLVFLAGSSVLLYYTFHSQSLYY
SLIFLNPTLDHSSFWEVLWIVGITDFILKFLFMGLKCLILLMPSFIMPFKSKGYWYMLLEESCQ
YYRTFVPIPVWFRYLISYGEFGNVTRWSLGILLALLYLILKLLDFFGNLRTFRRVLQIFFTRPS
YGVAASKRQCSDVDDICSVCQAEFQKPILLICQHIFCEECITLWFNREKTCPLCRTVISDHINK
WKDGATSSHFQIY

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Ensembl Acc Id:

ENSCAFP00000041394 ⟸ ENSCAFT00000043037

Ensembl Acc Id:

ENSCAFP00000044052 ⟸ ENSCAFT00000071007

RefSeq Acc Id:

XP_038342080 ⟸ XM_038486152

RefSeq Acc Id:

XP_038342079 ⟸ XM_038486151

RefSeq Acc Id:

XP_038467864 ⟸ XM_038611936

RefSeq Acc Id:

XP_038467863 ⟸ XM_038611935

RefSeq Acc Id:	XP_038533110 ⟸ XM_038677182
- UniProtKB:	A0A8C0PJJ5 (UniProtKB/TrEMBL), A0A8C0JM56 (UniProtKB/TrEMBL), A0A8I3PSS3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038533109 ⟸ XM_038677181
- UniProtKB:	A0A8C0PJJ5 (UniProtKB/TrEMBL), A0A8C0JM56 (UniProtKB/TrEMBL), A0A8I3PSS3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038403899 ⟸ XM_038547971
- UniProtKB:	A0A8C0JM56 (UniProtKB/TrEMBL), A0A8C0PJJ5 (UniProtKB/TrEMBL), A0A8I3PSS3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038403898 ⟸ XM_038547970
- UniProtKB:	A0A8C0JM56 (UniProtKB/TrEMBL), A0A8C0PJJ5 (UniProtKB/TrEMBL), A0A8I3PSS3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845036587 ⟸ ENSCAFT00845046601

Protein Domains

RING-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000028780	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030025263	UniProtKB/TrEMBL
	ENSCAFG00040001677	UniProtKB/TrEMBL
	ENSCAFG00845026431	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000043037.3	UniProtKB/TrEMBL
	ENSCAFT00030046640.1	UniProtKB/TrEMBL
	ENSCAFT00040003179.1	UniProtKB/TrEMBL
	ENSCAFT00845046601	ENTREZGENE
	ENSCAFT00845046601.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.40.10	UniProtKB/TrEMBL
InterPro	RNFT1/2	UniProtKB/TrEMBL
	Znf_RING	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
	Znf_RING_CS	UniProtKB/TrEMBL
KEGG Report	cfa:480581	UniProtKB/TrEMBL
NCBI Gene	RNFT1	ENTREZGENE
PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNFT1	UniProtKB/TrEMBL
	PTHR15860	UniProtKB/TrEMBL
Pfam	zf-RING_2	UniProtKB/TrEMBL
PROSITE	ZF_RING_1	UniProtKB/TrEMBL
	ZF_RING_2	UniProtKB/TrEMBL
SMART	RING	UniProtKB/TrEMBL
Superfamily-SCOP	RING/U-box	UniProtKB/TrEMBL
UniProt	A0A8C0JM56	ENTREZGENE
	A0A8C0PJJ5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3PSS3	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:45677	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar