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Gene: Rnft1 (ring finger protein, transmembrane 1) Mus musculus

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Symbol:

Rnft1

Name:

ring finger protein, transmembrane 1

RGD ID:

1557343

MGI Page

MGI

Description:

Predicted to enable ubiquitin binding activity and ubiquitin protein ligase activity. Predicted to be involved in positive regulation of ERAD pathway and protein autoubiquitination. Predicted to be located in early endosome membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human RNFT1 (ring finger protein, transmembrane 1).

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

0610013E23Rik; AV007605; E3 ubiquitin-protein ligase RNFT1; RING finger and transmembrane domain-containing protein 1; RP23-467J12.1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RNFT1 (ring finger protein, transmembrane 1)	HGNC	Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Rnft1 (ring finger protein, transmembrane 1)	RGD	RGD
Chinchilla lanigera (long-tailed chinchilla):	Rnft1 (ring finger protein, transmembrane 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RNFT1 (ring finger protein, transmembrane 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RNFT1 (ring finger protein, transmembrane 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rnft1 (ring finger protein, transmembrane 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RNFT1 (ring finger protein, transmembrane 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RNFT1 (ring finger protein, transmembrane 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rnft1 (ring finger protein, transmembrane 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Rnft1 (ring finger protein, transmembrane 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RNFT1 (ring finger protein, transmembrane 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rnft1 (ring finger protein, transmembrane 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid\|ZFIN)
Drosophila melanogaster (fruit fly):	CG13605	Alliance	DIOPT (Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ZC13.1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rnft1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	86,375,483 - 86,389,833 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	86,375,483 - 86,389,851 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	86,484,657 - 86,499,007 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	86,484,657 - 86,499,025 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	86,298,159 - 86,312,509 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	86,300,852 - 86,315,202 (+)	NCBI		MGSCv36	mm8
Celera	11	96,100,673 - 96,115,091 (+)	NCBI		Celera
Cytogenetic Map	11	C	NCBI
cM Map	11	51.82	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rnft1	Mouse	Joubert syndrome 1		ISO	RNFT1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Familial aplasia of the vermis	ClinVar	PMID:28492532

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rnft1	Mouse	(-)-epigallocatechin 3-gallate	multiple interactions	ISO	RNFT1 (Homo sapiens)	6480464	[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of RNFT1 mRNA	CTD	PMID:22079256
Rnft1	Mouse	1,2-dimethylhydrazine	decreases expression	EXP		6480464	1 and 2-Dimethylhydrazine results in decreased expression of RNFT1 mRNA	CTD	PMID:22206623
Rnft1	Mouse	17alpha-ethynylestradiol	affects expression	EXP		6480464	Ethinyl Estradiol affects the expression of RNFT1 mRNA	CTD	PMID:17555576
Rnft1	Mouse	17beta-estradiol	decreases expression	ISO	RNFT1 (Homo sapiens)	6480464	Estradiol results in decreased expression of RNFT1 mRNA	CTD	PMID:23019147
Rnft1	Mouse	17beta-estradiol	increases expression	EXP		6480464	Estradiol results in increased expression of RNFT1 mRNA	CTD	PMID:39298647
Rnft1	Mouse	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	ISO	RNFT1 (Homo sapiens)	6480464	Tetrachlorodibenzodioxin results in decreased expression of RNFT1 mRNA	CTD	PMID:17101203
Rnft1	Mouse	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	ISO	Rnft1 (Rattus norvegicus)	6480464	Tetrachlorodibenzodioxin results in decreased expression of RNFT1 mRNA	CTD	PMID:33387578
Rnft1	Mouse	acrylamide	increases expression	ISO	RNFT1 (Homo sapiens)	6480464	Acrylamide results in increased expression of RNFT1 mRNA	CTD	PMID:32763439
Rnft1	Mouse	aflatoxin B1	decreases expression	EXP		6480464	Aflatoxin B1 results in decreased expression of RNFT1 mRNA	CTD	PMID:19770486
Rnft1	Mouse	antirheumatic drug	decreases expression	ISO	RNFT1 (Homo sapiens)	6480464	Antirheumatic Agents results in decreased expression of RNFT1 mRNA	CTD	PMID:24449571
Rnft1	Mouse	aristolochic acid A	decreases expression	ISO	RNFT1 (Homo sapiens)	6480464	aristolochic acid I results in decreased expression of RNFT1 mRNA	CTD	PMID:33212167
Rnft1	Mouse	atrazine	decreases expression	ISO	RNFT1 (Homo sapiens)	6480464	Atrazine results in decreased expression of RNFT1 mRNA	CTD	PMID:22378314
Rnft1	Mouse	benzo[a]pyrene	increases expression	ISO	RNFT1 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased expression of RNFT1 mRNA	CTD	PMID:26238291
Rnft1	Mouse	beta-lapachone	increases expression	ISO	RNFT1 (Homo sapiens)	6480464	beta-lapachone results in increased expression of RNFT1 mRNA	CTD	PMID:38218311
Rnft1	Mouse	bisphenol A	affects expression	ISO	Rnft1 (Rattus norvegicus)	6480464	bisphenol A affects the expression of RNFT1 mRNA	CTD	PMID:25181051
Rnft1	Mouse	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of RNFT1 mRNA	CTD	PMID:33221593
Rnft1	Mouse	cadmium dichloride	decreases expression	ISO	RNFT1 (Homo sapiens)	6480464	Cadmium Chloride results in decreased expression of RNFT1 mRNA	CTD	PMID:38568856
Rnft1	Mouse	calcitriol	increases expression	ISO	RNFT1 (Homo sapiens)	6480464	Calcitriol results in increased expression of RNFT1 mRNA	CTD	PMID:16002434
Rnft1	Mouse	carbamazepine	affects expression	ISO	RNFT1 (Homo sapiens)	6480464	Carbamazepine affects the expression of RNFT1 mRNA	CTD	PMID:25979313
Rnft1	Mouse	dibutyl phthalate	increases expression	EXP		6480464	Dibutyl Phthalate results in increased expression of RNFT1 mRNA	CTD	PMID:21266533
Rnft1	Mouse	dicrotophos	decreases expression	ISO	RNFT1 (Homo sapiens)	6480464	dicrotophos results in decreased expression of RNFT1 mRNA	CTD	PMID:28302478
Rnft1	Mouse	dioxygen	decreases expression	ISO	RNFT1 (Homo sapiens)	6480464	Oxygen deficiency results in decreased expression of RNFT1 mRNA	CTD	PMID:24236059
Rnft1	Mouse	dorsomorphin	multiple interactions	ISO	RNFT1 (Homo sapiens)	6480464	[NOG protein co-treated with mercuric bromide co-treated with dorsomorphin co-treated with 4-(5-benzo(1 more ...	CTD	PMID:27188386
Rnft1	Mouse	doxorubicin	increases expression	ISO	RNFT1 (Homo sapiens)	6480464	Doxorubicin results in increased expression of RNFT1 mRNA	CTD	PMID:29803840
Rnft1	Mouse	gold atom	decreases expression	ISO	RNFT1 (Homo sapiens)	6480464	Gold results in decreased expression of RNFT1 mRNA	CTD	PMID:25523186
Rnft1	Mouse	gold(0)	decreases expression	ISO	RNFT1 (Homo sapiens)	6480464	Gold results in decreased expression of RNFT1 mRNA	CTD	PMID:25523186
Rnft1	Mouse	levonorgestrel	multiple interactions	ISO	RNFT1 (Homo sapiens)	6480464	[testosterone undecanoate co-treated with Levonorgestrel] results in increased expression of RNFT1 mRNA	CTD	PMID:19074003
Rnft1	Mouse	manganese atom	multiple interactions	ISO	RNFT1 (Homo sapiens)	6480464	[manganese chloride results in increased abundance of Manganese] which results in increased expression of RNFT1 mRNA	CTD	PMID:39836092
Rnft1	Mouse	manganese(0)	multiple interactions	ISO	RNFT1 (Homo sapiens)	6480464	[manganese chloride results in increased abundance of Manganese] which results in increased expression of RNFT1 mRNA	CTD	PMID:39836092
Rnft1	Mouse	manganese(II) chloride	multiple interactions	ISO	RNFT1 (Homo sapiens)	6480464	[manganese chloride results in increased abundance of Manganese] which results in increased expression of RNFT1 mRNA	CTD	PMID:39836092
Rnft1	Mouse	mercury dibromide	increases expression	ISO	RNFT1 (Homo sapiens)	6480464	mercuric bromide results in increased expression of RNFT1 mRNA	CTD	PMID:26272509
Rnft1	Mouse	mercury dibromide	multiple interactions	ISO	RNFT1 (Homo sapiens)	6480464	[NOG protein co-treated with mercuric bromide co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of RNFT1 mRNA	CTD	PMID:27188386
Rnft1	Mouse	methyl methanesulfonate	increases expression	ISO	RNFT1 (Homo sapiens)	6480464	Methyl Methanesulfonate results in increased expression of RNFT1 mRNA	CTD	PMID:23649840
Rnft1	Mouse	ozone	multiple interactions	ISO	RNFT1 (Homo sapiens)	6480464	[Air Pollutants results in increased abundance of Ozone] which affects the expression of RNFT1 mRNA	CTD	PMID:35430440
Rnft1	Mouse	paracetamol	increases expression	ISO	Rnft1 (Rattus norvegicus)	6480464	Acetaminophen results in increased expression of RNFT1 mRNA	CTD	PMID:33387578
Rnft1	Mouse	phenylmercury acetate	increases expression	ISO	RNFT1 (Homo sapiens)	6480464	Phenylmercuric Acetate results in increased expression of RNFT1 mRNA	CTD	PMID:26272509
Rnft1	Mouse	phenylmercury acetate	multiple interactions	ISO	RNFT1 (Homo sapiens)	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of RNFT1 mRNA	CTD	PMID:27188386
Rnft1	Mouse	potassium chromate	decreases expression	ISO	RNFT1 (Homo sapiens)	6480464	potassium chromate(VI) results in decreased expression of RNFT1 mRNA	CTD	PMID:22079256
Rnft1	Mouse	potassium chromate	multiple interactions	ISO	RNFT1 (Homo sapiens)	6480464	[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of RNFT1 mRNA	CTD	PMID:22079256
Rnft1	Mouse	quercetin	decreases expression	ISO	RNFT1 (Homo sapiens)	6480464	Quercetin results in decreased expression of RNFT1 mRNA	CTD	PMID:21632981
Rnft1	Mouse	quinolin-8-ol	decreases expression	ISO	RNFT1 (Homo sapiens)	6480464	Oxyquinoline results in decreased expression of RNFT1 mRNA	CTD	PMID:21632981
Rnft1	Mouse	SB 431542	multiple interactions	ISO	RNFT1 (Homo sapiens)	6480464	[NOG protein co-treated with mercuric bromide co-treated with dorsomorphin co-treated with 4-(5-benzo(1 more ...	CTD	PMID:27188386
Rnft1	Mouse	sodium arsenite	increases expression	ISO	RNFT1 (Homo sapiens)	6480464	sodium arsenite results in increased expression of RNFT1 mRNA	CTD	PMID:38568856
Rnft1	Mouse	sunitinib	decreases expression	ISO	RNFT1 (Homo sapiens)	6480464	Sunitinib results in decreased expression of RNFT1 mRNA	CTD	PMID:31533062
Rnft1	Mouse	testosterone undecanoate	multiple interactions	ISO	RNFT1 (Homo sapiens)	6480464	[testosterone undecanoate co-treated with Levonorgestrel] results in increased expression of RNFT1 mRNA	CTD	PMID:19074003
Rnft1	Mouse	thioacetamide	increases expression	ISO	Rnft1 (Rattus norvegicus)	6480464	Thioacetamide results in increased expression of RNFT1 mRNA	CTD	PMID:34492290
Rnft1	Mouse	titanium dioxide	decreases methylation	EXP		6480464	titanium dioxide results in decreased methylation of RNFT1 promoter	CTD	PMID:35295148
Rnft1	Mouse	trichostatin A	increases expression	ISO	RNFT1 (Homo sapiens)	6480464	trichostatin A results in increased expression of RNFT1 mRNA	CTD	PMID:24935251
Rnft1	Mouse	tungsten	increases expression	EXP		6480464	Tungsten results in increased expression of RNFT1 mRNA	CTD	PMID:30912803
Rnft1	Mouse	valproic acid	decreases methylation	ISO	RNFT1 (Homo sapiens)	6480464	Valproic Acid results in decreased methylation of RNFT1 gene	CTD	PMID:29154799
Rnft1	Mouse	valproic acid	affects expression	ISO	RNFT1 (Homo sapiens)	6480464	Valproic Acid affects the expression of RNFT1 mRNA	CTD	PMID:25979313
Rnft1	Mouse	valproic acid	increases expression	ISO	RNFT1 (Homo sapiens)	6480464	Valproic Acid results in increased expression of RNFT1 mRNA	CTD	PMID:23179753 more ...
Rnft1	Mouse	valproic acid	multiple interactions	ISO	RNFT1 (Homo sapiens)	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of RNFT1 mRNA	CTD	PMID:27188386

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rnft1	Mouse	positive regulation of ERAD pathway	involved_in	ISO	UniProtKB:Q5M7Z0	2290270		GO_Central	GO_REF:0000119
Rnft1	Mouse	positive regulation of ERAD pathway	involved_in	IBA	PANTHER:PTN002697527 and UniProtKB:Q5M7Z0	2290270		GO_Central	GO_REF:0000033
Rnft1	Mouse	positive regulation of ERAD pathway	involved_in	ISS	UniProtKB:Q5M7Z0	2290270		UniProt	GO_REF:0000024
Rnft1	Mouse	protein autoubiquitination	involved_in	ISO	UniProtKB:Q5M7Z0	2290270		GO_Central	GO_REF:0000119
Rnft1	Mouse	protein autoubiquitination	involved_in	ISS	UniProtKB:Q5M7Z0	2290270		UniProt	GO_REF:0000024

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rnft1	Mouse	early endosome membrane	located_in	IEA	UniProtKB-SubCell:SL-0093	2290270		UniProt	GO_REF:0000044
Rnft1	Mouse	endoplasmic reticulum	located_in	ISS	UniProtKB:Q5M7Z0	2290270		UniProt	GO_REF:0000024
Rnft1	Mouse	endoplasmic reticulum	is_active_in	IBA	PANTHER:PTN002697527 and UniProtKB:Q5M7Z0	2290270		GO_Central	GO_REF:0000033
Rnft1	Mouse	endoplasmic reticulum	located_in	ISO	UniProtKB:Q5M7Z0	2290270		GO_Central	GO_REF:0000119

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rnft1	Mouse	ubiquitin binding	enables	ISO	UniProtKB:Q5M7Z0	2290270		GO_Central	GO_REF:0000119
Rnft1	Mouse	ubiquitin binding	enables	ISS	UniProtKB:Q5M7Z0	2290270		UniProt	GO_REF:0000024
Rnft1	Mouse	ubiquitin protein ligase activity	enables	ISO	UniProtKB:Q5M7Z0	2290270		GO_Central	GO_REF:0000119
Rnft1	Mouse	ubiquitin protein ligase activity	enables	ISS	UniProtKB:Q5M7Z0	2290270		UniProt	GO_REF:0000024
Rnft1	Mouse	ubiquitin protein ligase activity	enables	IBA	PANTHER:PTN000407223 and UniProtKB:Q5M7Z0	2290270		GO_Central	GO_REF:0000033
Rnft1	Mouse	zinc ion binding	enables	IEA	UniProtKB-KW:KW-0863	2290270		UniProt	GO_REF:0000043

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Rnft1	Mouse	abnormal kidney morphology		IEA		5509061		MGI
Rnft1	Mouse	abnormal mammary gland morphology		IEA		5509061		MGI

#	Reference Title	Reference Citation
1.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	MGDs mouse GO annotations	MGD data from the GO Consortium
3.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Database resources of the National Center for Biotechnology Information.	Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.

PMID:8889548	PMID:10349636	PMID:11042159	PMID:11076861	PMID:12477932	PMID:14610273	PMID:16141072	PMID:16141073	PMID:21873635	PMID:38355793

Rnft1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	86,375,483 - 86,389,833 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	86,375,483 - 86,389,851 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	86,484,657 - 86,499,007 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	86,484,657 - 86,499,025 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	86,298,159 - 86,312,509 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	86,300,852 - 86,315,202 (+)	NCBI		MGSCv36	mm8
Celera	11	96,100,673 - 96,115,091 (+)	NCBI		Celera
Cytogenetic Map	11	C	NCBI
cM Map	11	51.82	NCBI

RNFT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	59,952,240 - 59,964,740 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	59,952,240 - 59,964,761 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	58,029,601 - 58,042,101 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	55,384,505 - 55,396,899 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	54,493,237 - 54,505,631 (-)	NCBI		Celera
Cytogenetic Map	17	q23.1	NCBI
HuRef	17	53,402,180 - 53,414,575 (-)	NCBI		HuRef
CHM1_1	17	58,093,740 - 58,106,136 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	60,820,980 - 60,833,476 (-)	NCBI		T2T-CHM13v2.0

Rnft1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	71,807,403 - 71,821,132 (+)	NCBI		GRCr8
mRatBN7.2	10	71,310,052 - 71,322,507 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	71,310,104 - 71,323,778 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	75,929,989 - 75,941,112 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	75,434,797 - 75,445,920 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	70,899,410 - 70,910,533 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	73,807,455 - 73,821,178 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	73,809,157 - 73,817,982 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	76,278,401 - 76,292,132 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	76,640,223 - 76,651,484 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	70,231,791 - 70,245,501 (+)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

Rnft1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	3,164,845 - 3,178,991 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	3,165,316 - 3,178,991 (+)	NCBI	ChiLan1.0	ChiLan1.0

RNFT1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	76,113,925 - 76,126,370 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	80,924,130 - 80,937,015 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	54,016,689 - 54,029,100 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	58,858,294 - 58,869,908 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	58,858,416 - 58,869,908 (-)	Ensembl	panpan1.1		panPan2

RNFT1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	34,430,119 - 34,442,760 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	34,335,554 - 34,442,374 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	33,662,099 - 33,674,787 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	35,241,103 - 35,253,845 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	35,241,110 - 35,253,442 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	34,024,780 - 34,037,509 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	34,309,749 - 34,322,468 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	34,395,977 - 34,408,708 (-)	NCBI		UU_Cfam_GSD_1.0

Rnft1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	33,635,983 - 33,648,362 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	3,426,762 - 3,438,900 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	3,426,692 - 3,439,179 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RNFT1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	36,162,444 - 36,174,851 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	36,162,438 - 36,175,135 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	37,534,630 - 37,542,161 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RNFT1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	33,483,167 - 33,496,608 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	33,483,194 - 33,497,325 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	4,268,841 - 4,282,313 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rnft1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624871	1,707,509 - 1,721,078 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624871	1,707,570 - 1,721,026 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Rnft1
350 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	1137
Count of miRNA genes:	650
Interacting mature miRNAs:	799
Transcripts:	ENSMUST00000020827, ENSMUST00000125675, ENSMUST00000131246
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
27226783	Tibl5_m	tibia length 5, 5 week (mouse)					11	68190826	101890826	Mouse
1300628	Lgth6_m	body length 6 (mouse)			Not determined		11	66733420	100733652	Mouse
4141367	Inf1_m	acute ozone induced inflammation (mouse)			Not determined			44630038	113058009	Mouse
1558812	Rafar_m	retinoic acid induced forelimb autopod reduction (mouse)			Not determined		11	70691198	104691366	Mouse
1300766	Skull16_m	skull morphology 16 (mouse)			Not determined		11	81574481	115574636	Mouse
1301404	Sbmd4_m	spinal bone mineral density 4 (mouse)			Not determined		11	72019649	106019734	Mouse
4142121	Tmc1m2_m	Tmc1 modifier 2 (mouse)			Not determined		11	56864027	114157957	Mouse
27226758	Femd3_m	femur midshaft diameter 3, 5 week (mouse)					11	80890826	101890826	Mouse
14747003	Mancz9_m	mandible centroid size 9 (mouse)					11	85844911	119844911	Mouse
1301640	Lore4_m	loss of righting induced by ethanol 4 (mouse)			Not determined		11	79156009	107616472	Mouse
10412288	Carg4_m	Candida albicans resistance gene 4 (mouse)			Not determined		11	81810267	115810267	Mouse
1357878	Mastr_m	modifier of astrocytoma (mouse)			Not determined		11	45708581	89818733	Mouse
1301681	Sle13_m	systematic lupus erythematosus susceptibility 13 (mouse)			Not determined		11	70691198	104691366	Mouse
1300784	Prdt3_m	prion disease incubation time 3 (mouse)			Not determined		11	66733420	100733652	Mouse
4141339	Nilac2_m	nicotine induced locomotor activity 2 (mouse)			Not determined		11	70691198	104691366	Mouse
10413882	Moe1_m	modifier of epilepsy 1 (mouse)					11	77770978	111771099	Mouse
11039501	Ltpr6a_m	Leishmania tropica response 6a (mouse)					11	64830336	98830473	Mouse
13208559	Wght10_m	weight 10 (mouse)					11	3950000	88890826	Mouse
13524840	Ppiq9a_m	prepulse inhibition QTL 9a (mouse)					11	52494385	86494385	Mouse
11039502	Ltpr6b_m	Leishmania tropica response 6b (mouse)					11	64830336	98830473	Mouse
13208558	Lgth12_m	body length 12 (mouse)					11	3950000	94890826	Mouse
10045616	Heal25_m	wound healing/regeneration 25 (mouse)			Not determined		11	77437183	111437322	Mouse
1300664	Etohcta9_m	ethanol conditioned taste aversion 9 (mouse)			Not determined		11	57754660	91754758	Mouse
1301310	Tmevd5_m	Theiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)			Not determined		11	72726125	106726289	Mouse
1300924	Ity2_m	immunity to S. typhimurium 2 (mouse)			Not determined		1	58508030	87695238	Mouse
11039515	Ltpr6_m	Leishmania tropica response 6 (mouse)					11	64830336	98830473	Mouse
4142348	Pstc2_m	periosteal circumference 2 (mouse)			Not determined		11	72818615	106818733	Mouse
1300774	Pgia7_m	proteoglycan induced arthritis 7 (mouse)			Not determined		11	53390588	87390737	Mouse
1301414	Heal10_m	wound healing/regeneration 10 (mouse)			Not determined		11	77437183	111437322	Mouse
15092049	Wsigrme3_m	week six growth rate, maternal effect 3 (mouse)					11	84877324	96629512	Mouse
1300651	Pcyts3_m	plasmacytoma susceptibility 3 (mouse)			Not determined		11	70691198	104691366	Mouse
1301546	Pcir2_m	periosteal circumference 2 (mouse)			Not determined		11	66733420	100733652	Mouse
1300905	Scc6_m	colon tumor susceptibility 6 (mouse)			Not determined		11	6880277	89019734	Mouse
1300649	Crhq1_m	compensatory renal hypertrophy QTL 1 (mouse)			Not determined		11	81574481	115574636	Mouse
14746970	Manh71_m	mandible shape 71 (mouse)					11	79416257	113416257	Mouse
15092057	Lgrme3_m	late growth rate, maternal effect 3 (mouse)					11	84877324	96629512	Mouse
10043865	T2dm5sa_m	type 2 diabetes mellitus 5 in SMXA RI mice (mouse)			Not determined		11	79813759	104502698	Mouse
39128214	Lwq20_m	liver weight QTL 20 (mouse)					11	12268637	118022724	Mouse
10043866	Adip19_m	adiposity 19 (mouse)			Not determined		11	72818615	106818733	Mouse
1301072	Eae22_m	experimental allergic encephalomyelitis 22 (mouse)			Not determined		11	82377698	116377820	Mouse
10412246	Dfs2_m	dental fluorosis suseptibility 2 (mouse)			Not determined		11	21807364	95881231	Mouse
11038695	Par8_m	pulmonary adenoma resistance 8 (mouse)					11	77063779	111063918	Mouse
1357766	Si5lq6_m	serum IGFBP-5 level QTL 6 (mouse)			Not determined		11	66733420	100733652	Mouse
1301319	Dautb4_m	dopamine uptake transporter binding 4 (mouse)			Not determined		11	62156005	96156153	Mouse
1301833	Tbbmd5_m	total body bone mineral density 5 (mouse)			Not determined		11	66733420	100733652	Mouse
4141012	Femwf6_m	femur work to failure 6 (mouse)			Not determined			66733420	100733652	Mouse
1301987	Pid3_m	prior incubation determinant 3 (mouse)			Not determined		11	61686820	88699728	Mouse
27226730	Tibmd1_m	tibia midshaft diameter 1, 5 week (mouse)					11	62590826	109390826	Mouse
4141894	Nidd6k_m	Nidd6 on KK-A (mouse)			Not determined			19124204	96897826	Mouse
10044004	Stzid3_m	streptozotocin induced diabetes susceptibility 3 (mouse)			Not determined		11	63319407	94063918	Mouse
1302124	Eae7_m	susceptibility to experimental allergic encephalomyelitis 7 (mouse)			Not determined		11	77573873	99377820	Mouse

AA959758

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	11	86,499,174 - 86,499,258	UniSTS	GRCm38
MGSCv37	11	86,312,676 - 86,312,760	UniSTS	GRCm37
Celera	11	96,115,258 - 96,115,342	UniSTS
Cytogenetic Map	11	C	UniSTS
Whitehead/MRC_RH	11	1114.75	UniSTS

AV007605

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	11	86,496,184 - 86,496,294	UniSTS	GRCm38
MGSCv37	11	86,309,686 - 86,309,796	UniSTS	GRCm37
Celera	11	96,112,066 - 96,112,176	UniSTS
Cytogenetic Map	11	C	UniSTS
Whitehead/MRC_RH	11	1110.65	UniSTS

RH139016

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	11	86,484,858 - 86,485,006	UniSTS	GRCm38
MGSCv37	11	86,298,360 - 86,298,508	UniSTS	GRCm37
Celera	11	96,100,875 - 96,101,023	UniSTS
Cytogenetic Map	11	C	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_029788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK002624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK036401	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK153293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK171077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL604063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC037057	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC050796	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000020827 ⟹ ENSMUSP00000020827

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	86,375,483 - 86,389,851 (+)	Ensembl
GRCm38.p6 Ensembl	11	86,484,657 - 86,499,025 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000125675

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	86,375,511 - 86,381,337 (+)	Ensembl
GRCm38.p6 Ensembl	11	86,484,685 - 86,490,511 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000131246

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	86,375,556 - 86,376,931 (+)	Ensembl
GRCm38.p6 Ensembl	11	86,484,730 - 86,486,105 (+)	Ensembl

RefSeq Acc Id:

NM_029788 ⟹ NP_084064

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	86,375,483 - 86,389,833 (+)	NCBI
GRCm38	11	86,484,657 - 86,499,007 (+)	ENTREZGENE
MGSCv37	11	86,298,159 - 86,312,509 (+)	RGD
Celera	11	96,100,673 - 96,115,091 (+)	RGD
cM Map	11		ENTREZGENE

Sequence:

show sequence

AGGGAGCGCGCGCGCCGCCGCGGGGCCAGGCCGAGCGCTGCTGGTGGCGTCCGAGGCTGAAGGCTTGGCGAGAAGGGCTTGCGGCCGCGTGTCGGGCTGTTGGTATTGTGGCTGCCGAGGCCGCCCGC
TCCTGGTCATGAGAGGAGAAAGAGTCCTGAAGCAAAGACATTTTAGAGAGAAAATACTCAAGGGCCATGCAAGCCAGCTGTAACCAACTGCATGATCCTCCGGGCACTGCACATGAAGATGCTGCAGC
CTCCCCGTGTGGTCATTCAAGATCAACAGAAGGTTCCCTTCACCCTGGGGATGTACATATCCAAATAAACTCCGGACCAAAAGAATATTCTGAAAATCCAAGCTCTAGAAATCCCAGGTCAGGCGTCT
GTACTTGTGCCCATGGATGTGTGCATGGTCGTTTCCGGAGTTACTCCCACAGTGAAGCAAGACCACCTGATGACTTTGCTACAGAGTCTGGGGAACATGGAAGTGGCTCCTTCTCAGAATTCCGCTAT
CTCTTCAAGTGGTTGCAAAAAAGTCTTCCTTATATTTTAATTCTGGGTATTAAACTTGTTATGCAGCATATAACAGGAATTTCTCTTGGAATTGGGCTGCTAACAACTTTTATGTATGCAAACAAAAG
CATTGTAAATCAGGTTTTTCTAAGAGAACGGTCATCAAAGCTCCGCTGTGCTTGGTTACTGGTGTTCCTGGCAGGTTCCTCCGTCCTCTTATATTACACTTTTCATTCTCAGTCACTTCATTACAGCT
TAATTTTCTTAAATCCTACACTCGAACAGTTGAGCTTCTGGGAAGTTCTTTGGATTGTTGGAATTACAGACTTCATTCTGAAATTCTTTTTCATGGGTTTAAAATGCCTGATTTTATTGGTGCCTTCT
TTCATCATGCCTTTTAAATCAAAGGGATATTGGTACATGCTTTTAGAAGAATTGTGTCAGTATTACCGAATTTTTGTTCCTATACCAGTTTGGTTTCGGTACCTTATAAGCTACGGGGAGTTTGGTAA
TGTAACTACATGGAGTCTTGGGATATTGCTGGCTTTACTCTACCTCATACTAAAACTTTTGGACTTTTTTGGACACTTGAGAACTTTCAGACAGGTCTTACGAGTATTTTTTACACGACCGAGTTATG
GAGTGCCTGCCAGCAAGAGACAGTGTTCAGATATGGATGGTATTTGTACAATATGTCAAGCGGAATTTCAGAAGCCAGTTCTTCTCTTTTGTCAGCATATATTCTGTGAAGAATGTATCACCTTATGG
TTTAACAGAGAGAAAACATGTCCACTGTGCAGAACTGTGATTTCAGAATGTATAAACAAATGGAAAGATGGGGCCACTTCATCTCACCTCCAGATGTACTAAGTTGTTCCAACTATTAAGGCCTCAAG
ACACTAATTTTATCTGGTTTGGTAACTATTGATAAAGGTATAATTGATCTCCAGCAGTAGAAAAAGGCTTTAGGGTATCACGAGACATGTTTATAGTTCAGTTTCTCAGAAGTTTAAGTGCAAGAGCC
CTGCATTTTTAAACTATATATTCATTCACCTTAATAAATATGCAACATTTATTCCACTTATTTGACAAATAATTGCAGTGTTAAATTGGAAATGTGATTTCTTATCAATAATACCAAAATAGCAATTA
GAAATAGAACTAGCCATTTTAAAGGGGTTCAGGTACTGTTTCCTGACAGGTTTTCAGAATAAAGATTTTGCATAGTATTTTAAGATATATAGTATCTGAAACAATTTACAGATTTTTATAATTCCCAT
TCTAAAAATGCTTAAATTTTTCATAAGATTGTATTTTTAAATGAAAGTTCTAAATGCTATATTTTACCTATAACAATCACATTTTCTAAGTGAAGATTTACTGAGGATGATATATTTTAATACTGTAT
TATGCTCTATAATATGACTAGTAATCAGTGAGAATAAATGATTTAGATTCATTCACCTGGTGGACCTGTTATGTACTCCTTGCCACTAGCTGTCTTGTGTTTTGTGTAGTACCATGTAATAGCTTGAA
ATAACAATGAAAGTGATTTGAATGTGGGCTGGGGATGTAGCTCACAAGTTTTACAATCACCACCTGTTGAGATATGAAAGCTTGCACCCAAGGCTGTGGTGGAGTGCCTGCTTAGTGCGCACTGTGTC
CTGGCTGAATTCCACATCGAGGAGAAAGGGAGAAAACAGCAACTTTCACTCAGGGGAAGCCAGAACATTAGTCATCTCCAGCTGATTTCTGCAAGAAGAAAAGGTAATGGCGCACTTTACCTTTCCTT
GTGTTTCCTCTGAAGAATCTGAAATCTTTACCATGACTAAAGGGCTGCTACTGCGAAGGCTTCTTCGCATTTATCATCAGTAACAAGGAGAAGTTGAGACAAAAACAAATTAGCCGTGTAAGACAGAC
TAAGCTGGGTTCTAGAGATGGCTTTAGCAGATTAGAACATGTGCTGCAGTTCCAGGACCAGAGTTTATGCTGAATGCTGGGATTAAAGTCGTGTGCTACCACCACCACCACCACCACCTGACTAAAGT
TAAACTTTAAAGACAGACTAAACCAGTACATGGCTTAATAAGGATAGTGACCAAGTGTCATGGGTGAAATCATGTCTGTACAGCTGCTACCTAGATTGACAGAGGTACAGGAAGACTGTGATACCCTC
AACCAGATAAACACCACATCACTTTTTGTTTTAAATGAGTATTCACTCTATATTTGTGTATATTGTATGTGTCCACACACACATAGAGTCTATTATACACACACACACACCTTGCCTAATGAGAATCA
CTGCTAAGTATATTAAATCACCTTCCTGGCTTTGTGGTGAAGCTTAGTTGTTAGATATACAAGGGATGAAGGAGAGAAAGTGATTTGTGATTAAAATTTCACTGTGAAAGTCAGCTGAAATGACTTCC
TGTTTAAAACTATTACATTCATCCCTCTTAACACTTATCACAGTTTCTCCAGGCAACTTGTTTTTTTAATATGATTAAATAACAAAGGGAGTTTGTAGAAGACTGAGGTGGGTGGATTTTTTCACAAG
GCTATCACTTAAAATTAGGAAAAGGGAAGTAACTCATAGCAAATATTTTAACCCCAGCAATTAAAGGCAGAAGCGGGTGAATCTGAGTTTGATGCCCATCTAGTCTCCAGAGCAAGTTCCAGGACAGG
CAGGGCTATAGAGAGAAACCCTGTCTTGTTCCAGACCACCTAGGGCTATATAAAGAGATCTTGTCTCTAAACAAAAACCAGAAAATGTAGTAAGGTTGTGGTACTCATTATCAGTAATAAACTGAAAC
ATTTCTCTTGCTTTTGCCCTTTGCTTTCACCTCAAAGGAAGAGGATTGATTTTGTGGATTTAGATCATCCTCTCTAAACAGTTGCTGTCCCAGCACTGAGAAATGCTGCTAGGGCATAGAGCAATGGC
TCAGCAGTGAAGAGCACTGTTGCTCCAGAGGCCTGTGGGTGTTCCCACACCGCAGCGAACAACCATCTCCAGTTCCAGGGGAGTCTGATGCCCTCTTCTGGCTTTCTTGAGCAATGCACACATGATGC
AGACACATACAGGCAAAACACCTATATACATAAAAATAAATGTCCAAAGAGAGAGGGGAGGTAAGGGGATTGGGGCCGGGGGGAGATGCTACCAACCACCAGGATTGAGACTATAACTCCTTGCTAGA
GATACTTTTGTTTTTCATTTTTTTCGAGATTGGGTTTCTGTGCAGCCTACGCTGTCCTGGAACTTGCTTTATAGGCCAGGCTAGCTACAAACACAGAGATCTGCTTGCCTCTGTCTCCTGAGGACTGG
GAAGGGACTGAAGGCAGGCACCACCGCATGTGGCAAGATGGGTGATTTCTTTGTTTTTCAGATTTATTTTGTGATAGTTATGATGAACCACTATTATGTGAGTACTAGAAACCAAAACCATGCCCTCG
AAAGGCACAGCATTGCTCCTGTGAAGCTATCTGACATATTTGCTAATTTTTTGTACAATTATTTTGAACATGAACATTACATTATCAAAGCTAGCTATGAGGTGTACTTAGGCAAATTGTTGATTATT
AATATAAGAAATTATTCCCACTATTTTTATGTGAAACTAGATTCCACATAGCTTGTTTCATGAATATTTTTAAAAGCAAACAATTCAAGTATATTAAAAATAACAAGAATCTGTAACACTTAATACAT
AAAATGACCACTAAGATTTGTTATATATTTAAATAGCTCCAATGTCTCGGGAGAAAGTTTTATAACTGTTATCTTTTATACAAAAGTAGTTTATTAAATATGGTAACATGAACATATCTAACACGTTA
ATGAAAAAATTGTACATCTGTTATGTATGCTATAGTAAATATACTAAAATTTTTTTCTCTCAAGTAATAAAAAATCACTTCT

hide sequence


Protein RefSeqs	NP_084064	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH50796	(Get FASTA)	NCBI Sequence Viewer
	BAB22239	(Get FASTA)	NCBI Sequence Viewer
	BAC29412	(Get FASTA)	NCBI Sequence Viewer
	BAE31876	(Get FASTA)	NCBI Sequence Viewer
	BAE42231	(Get FASTA)	NCBI Sequence Viewer
	EDL15786	(Get FASTA)	NCBI Sequence Viewer
	EDL15787	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000020827
	ENSMUSP00000020827.7
GenBank Protein	Q9DCN7	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_084064 ⟸ NM_029788

- UniProtKB:

Q3U649 (UniProtKB/Swiss-Prot), Q80X62 (UniProtKB/Swiss-Prot), Q9DCN7 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MQASCNQLHDPPGTAHEDAAASPCGHSRSTEGSLHPGDVHIQINSGPKEYSENPSSRNPRSGVCTCAHGCVHGRFRSYSHSEARPPDDFATESGEHGSGSFSEFRYLFKWLQKSLPYILILGIKLVMQ
HITGISLGIGLLTTFMYANKSIVNQVFLRERSSKLRCAWLLVFLAGSSVLLYYTFHSQSLHYSLIFLNPTLEQLSFWEVLWIVGITDFILKFFFMGLKCLILLVPSFIMPFKSKGYWYMLLEELCQYY
RIFVPIPVWFRYLISYGEFGNVTTWSLGILLALLYLILKLLDFFGHLRTFRQVLRVFFTRPSYGVPASKRQCSDMDGICTICQAEFQKPVLLFCQHIFCEECITLWFNREKTCPLCRTVISECINKWK
DGATSSHLQMY

hide sequence

Ensembl Acc Id:

ENSMUSP00000020827 ⟸ ENSMUST00000020827

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9DCN7-F1-model_v2	AlphaFold	Q9DCN7	1-395	view protein structure

RGD ID:

6820133

Promoter ID:

MM_KWN:9013

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

OTTMUST00000002393, OTTMUST00000002394, OTTMUST00000002395, UC007KSM.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	11	86,297,671 - 86,298,757 (+)	MPROMDB

RGD ID:

8676014

Promoter ID:

EPDNEW_M16038

Type:

initiation region

Name:

Rnft1_1

Description:

Mus musculus ring finger protein, transmembrane 1 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	11	86,484,689 - 86,484,749	EPDNEW

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000020521	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000020827	ENTREZGENE
	ENSMUST00000020827.7	UniProtKB/Swiss-Prot
Gene3D-CATH	3.30.40.10	UniProtKB/Swiss-Prot
InterPro	RNFT1/2	UniProtKB/Swiss-Prot
	Znf_RING	UniProtKB/Swiss-Prot
	Znf_RING/FYVE/PHD	UniProtKB/Swiss-Prot
	Znf_RING_CS	UniProtKB/Swiss-Prot
KEGG Report	mmu:76892	UniProtKB/Swiss-Prot
MGD	MGI:1924142	ENTREZGENE
NCBI Gene	76892	ENTREZGENE
PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNFT1	UniProtKB/Swiss-Prot
	PTHR15860	UniProtKB/Swiss-Prot
Pfam	zf-RING_2	UniProtKB/Swiss-Prot
PhenoGen	Rnft1	PhenoGen
PROSITE	ZF_RING_1	UniProtKB/Swiss-Prot
	ZF_RING_2	UniProtKB/Swiss-Prot
SMART	RING	UniProtKB/Swiss-Prot
Superfamily-SCOP	RING/U-box	UniProtKB/Swiss-Prot
UniProt	Q3U649	ENTREZGENE
	Q80X62	ENTREZGENE
	Q9DCN7	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	Q3U649	UniProtKB/Swiss-Prot
	Q80X62	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Imported Disease Annotations - ClinVar

Mammalian Phenotype

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Imported Disease Annotations - ClinVar

Mammalian Phenotype