Mrps18b (mitochondrial ribosomal protein S18B) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Mrps18b (mitochondrial ribosomal protein S18B) Heterocephalus glaber
Analyze
Symbol: Mrps18b
Name: mitochondrial ribosomal protein S18B
RGD ID: 18914621
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN mitochondrial translation (inferred); ASSOCIATED WITH Disease Progression (ortholog); genetic disease (ortholog); megacolon (ortholog); FOUND IN cell junction (ortholog); mitochondrial small ribosomal subunit (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 28S ribosomal protein S18b, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475425,069,854 - 25,076,104 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475425,069,857 - 25,076,044 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Mrps18b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475425,069,854 - 25,076,104 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475425,069,857 - 25,076,044 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
MRPS18B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38630,617,840 - 30,626,392 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl630,617,840 - 30,626,395 (+)EnsemblGRCh38hg38GRCh38
GRCh37630,585,617 - 30,594,169 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36630,693,585 - 30,702,148 (+)NCBINCBI36Build 36hg18NCBI36
Build 34630,693,584 - 30,702,146NCBI
Celera632,183,604 - 32,192,292 (+)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef630,385,654 - 30,394,342 (+)NCBIHuRef
CHM1_1630,587,595 - 30,596,284 (+)NCBICHM1_1
T2T-CHM13v2.0630,482,021 - 30,490,573 (+)NCBIT2T-CHM13v2.0
Mrps18b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391736,221,272 - 36,227,332 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1736,221,271 - 36,227,281 (-)EnsemblGRCm39 Ensembl
GRCm381735,910,380 - 35,916,440 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,910,379 - 35,916,389 (-)EnsemblGRCm38mm10GRCm38
MGSCv371736,047,330 - 36,053,314 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361735,518,438 - 35,524,422 (-)NCBIMGSCv36mm8
Celera1739,419,647 - 39,425,606 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.76NCBI
Mrps18b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8202,842,978 - 2,849,065 (+)NCBIGRCr8
mRatBN7.2202,838,174 - 2,844,260 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl202,838,030 - 2,844,260 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx202,889,984 - 2,896,037 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0202,894,954 - 2,901,007 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0202,921,099 - 2,927,165 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0203,344,870 - 3,350,929 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl203,344,870 - 3,350,927 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0205,442,393 - 5,448,452 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4202,985,972 - 2,992,031 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1202,986,225 - 2,992,253 (+)NCBI
Celera20264,183 - 270,242 (+)NCBICelera
Cytogenetic Map20p12NCBI
Mrps18b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955583635,697 - 641,885 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955583635,697 - 641,885 (+)NCBIChiLan1.0ChiLan1.0
MRPS18B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2545,175,270 - 45,184,206 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1641,138,461 - 41,147,399 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0630,360,136 - 30,368,735 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1631,230,124 - 31,237,970 (+)NCBIpanpan1.1PanPan1.1panPan2
MRPS18B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.112435,117 - 441,406 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl12435,180 - 441,161 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha12572,758 - 579,049 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.012579,258 - 585,768 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl12579,317 - 585,764 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.112435,808 - 442,103 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.012505,092 - 511,380 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.012574,914 - 581,424 (+)NCBIUU_Cfam_GSD_1.0
Mrps18b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494633,928,495 - 33,934,850 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936837294,654 - 299,857 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936837293,792 - 300,109 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPS18B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,165,946 - 23,172,998 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,166,314 - 23,172,718 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2726,835,923 - 26,842,328 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MRPS18B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11741,830,763 - 41,839,026 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604430,310,936 - 30,320,525 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000027484   ⟹   ENSHGLP00000027243
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475425,069,854 - 25,076,104 (-)Ensembl
RefSeq Acc Id: XM_004847088   ⟹   XP_004847145
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475425,069,857 - 25,076,044 (-)NCBI
RefSeq Acc Id: XM_013072741   ⟹   XP_012928195
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475425,069,857 - 25,075,948 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004847145 (Get FASTA)   NCBI Sequence Viewer  
  XP_012928195 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000027243
Reference Protein Sequences
RefSeq Acc Id: XP_004847145   ⟸   XM_004847088
- Peptide Label: isoform X1
- UniProtKB: G5C3B7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012928195   ⟸   XM_013072741
- Peptide Label: isoform X2
RefSeq Acc Id: ENSHGLP00000027243   ⟸   ENSHGLT00000027484


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019371 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000027484 ENTREZGENE
Gene3D-CATH 4.10.640.10 UniProtKB/TrEMBL
InterPro MRPS18B UniProtKB/TrEMBL
  Ribosomal_S18 UniProtKB/TrEMBL
  Ribosomal_S18_sf UniProtKB/TrEMBL
NCBI Gene Mrps18b ENTREZGENE
PANTHER 28S RIBOSOMAL PROTEIN S18B, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR13329 UniProtKB/TrEMBL
Pfam Ribosomal_S18 UniProtKB/TrEMBL
Superfamily-SCOP SSF46911 UniProtKB/TrEMBL
UniProt G5C3B7 ENTREZGENE, UniProtKB/TrEMBL