Eif4g1 (eukaryotic translation initiation factor 4 gamma 1) - Rat Genome Database

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Gene: Eif4g1 (eukaryotic translation initiation factor 4 gamma 1) Heterocephalus glaber
Analyze
Symbol: Eif4g1
Name: eukaryotic translation initiation factor 4 gamma 1
RGD ID: 18909986
Description: ENCODES a protein that exhibits ATP binding (ortholog); eukaryotic initiation factor 4E binding (ortholog); mRNA binding (ortholog); INVOLVED IN behavioral fear response (ortholog); cellular response to nutrient levels (ortholog); energy homeostasis (ortholog); PARTICIPATES IN translation initiation pathway; ASSOCIATED WITH 3-methylcrotonyl-CoA carboxylase 1 deficiency (ortholog); autistic disorder (ortholog); congenital disorder of glycosylation Id (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473072,251,840 - 72,271,724 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Eif4g1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473072,251,840 - 72,271,724 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
EIF4G1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383184,314,606 - 184,335,358 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3184,314,495 - 184,335,358 (+)EnsemblGRCh38hg38GRCh38
GRCh373184,032,394 - 184,053,146 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363185,515,050 - 185,535,840 (+)NCBINCBI36Build 36hg18NCBI36
Celera3182,472,966 - 182,494,042 (+)NCBICelera
Cytogenetic Map3q27.1NCBI
HuRef3181,439,248 - 181,459,772 (+)NCBIHuRef
CHM1_13183,996,741 - 184,017,602 (+)NCBICHM1_1
T2T-CHM13v2.03187,123,882 - 187,144,618 (+)NCBIT2T-CHM13v2.0
Eif4g1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391620,491,457 - 20,511,633 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1620,487,063 - 20,511,634 (+)EnsemblGRCm39 Ensembl
GRCm381620,672,720 - 20,692,883 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1620,668,313 - 20,692,884 (+)EnsemblGRCm38mm10GRCm38
MGSCv371620,672,822 - 20,692,956 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361620,586,292 - 20,606,426 (+)NCBIMGSCv36mm8
Celera1621,237,424 - 21,258,239 (+)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1612.49NCBI
Eif4g1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81193,726,322 - 93,746,387 (-)NCBIGRCr8
mRatBN7.21180,221,919 - 80,241,958 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1180,221,919 - 80,241,941 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01183,907,659 - 83,927,683 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1183,908,109 - 83,926,524 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01186,979,577 - 86,999,605 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41182,451,555 - 82,471,735 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11182,509,144 - 82,529,350 (-)NCBI
Celera1179,061,657 - 79,081,657 (-)NCBICelera
Cytogenetic Map11q23NCBI
Eif4g1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542023,161,078 - 23,180,568 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542023,161,541 - 23,179,788 (-)NCBIChiLan1.0ChiLan1.0
EIF4G1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22182,187,847 - 182,208,674 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13182,192,564 - 182,213,391 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03181,351,938 - 181,372,776 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13189,833,575 - 189,854,291 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3189,833,490 - 189,855,060 (+)Ensemblpanpan1.1panPan2
EIF4G1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13417,194,588 - 17,214,498 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3417,195,562 - 17,214,052 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3421,280,776 - 21,300,463 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03417,102,466 - 17,122,377 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3417,102,483 - 17,122,376 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13417,139,588 - 17,159,277 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03417,135,671 - 17,155,361 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03417,364,627 - 17,384,317 (+)NCBIUU_Cfam_GSD_1.0
Eif4g1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602119,456,677 - 119,475,343 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365785,548,500 - 5,567,339 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365785,548,526 - 5,567,220 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EIF4G1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13122,203,508 - 122,225,360 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113122,203,488 - 122,225,371 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213131,643,301 - 131,665,146 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EIF4G1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1155,085,326 - 5,106,551 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl155,084,780 - 5,105,288 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606313,862,963 - 13,884,237 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013072320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013072323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013072325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013072329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013072330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021256103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021256104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021256105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021256108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021256109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021256111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021256112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021256114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021256120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021256121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021256122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021256123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01003185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01003186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_013072320   ⟹   XP_012927774
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473072,251,840 - 72,271,724 (-)NCBI
RefSeq Acc Id: XM_013072323   ⟹   XP_012927777
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473072,251,840 - 72,271,724 (-)NCBI
RefSeq Acc Id: XM_013072325   ⟹   XP_012927779
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473072,251,840 - 72,271,724 (-)NCBI
RefSeq Acc Id: XM_013072329   ⟹   XP_012927783
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473072,251,840 - 72,271,724 (-)NCBI
RefSeq Acc Id: XM_013072330   ⟹   XP_012927784
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473072,251,840 - 72,270,485 (-)NCBI
RefSeq Acc Id: XM_021256103   ⟹   XP_021111762
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473072,251,840 - 72,271,724 (-)NCBI
RefSeq Acc Id: XM_021256104   ⟹   XP_021111763
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473072,251,840 - 72,271,724 (-)NCBI
RefSeq Acc Id: XM_021256105   ⟹   XP_021111764
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473072,251,840 - 72,271,724 (-)NCBI
RefSeq Acc Id: XM_021256108   ⟹   XP_021111767
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473072,251,840 - 72,271,724 (-)NCBI
RefSeq Acc Id: XM_021256109   ⟹   XP_021111768
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473072,251,840 - 72,271,724 (-)NCBI
RefSeq Acc Id: XM_021256111   ⟹   XP_021111770
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473072,251,840 - 72,271,724 (-)NCBI
RefSeq Acc Id: XM_021256112   ⟹   XP_021111771
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473072,251,840 - 72,271,724 (-)NCBI
RefSeq Acc Id: XM_021256114   ⟹   XP_021111773
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473072,251,840 - 72,271,724 (-)NCBI
RefSeq Acc Id: XM_021256120   ⟹   XP_021111779
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473072,251,840 - 72,271,724 (-)NCBI
RefSeq Acc Id: XM_021256121   ⟹   XP_021111780
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473072,251,840 - 72,271,724 (-)NCBI
RefSeq Acc Id: XM_021256122   ⟹   XP_021111781
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473072,251,840 - 72,271,724 (-)NCBI
RefSeq Acc Id: XM_021256123   ⟹   XP_021111782
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473072,251,840 - 72,271,724 (-)NCBI
RefSeq Acc Id: XP_021111780   ⟸   XM_021256121
- Peptide Label: isoform X14
RefSeq Acc Id: XP_012927783   ⟸   XM_013072329
- Peptide Label: isoform X9
RefSeq Acc Id: XP_021111768   ⟸   XM_021256109
- Peptide Label: isoform X8
RefSeq Acc Id: XP_021111764   ⟸   XM_021256105
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021111779   ⟸   XM_021256120
- Peptide Label: isoform X13
RefSeq Acc Id: XP_021111773   ⟸   XM_021256114
- Peptide Label: isoform X12
RefSeq Acc Id: XP_021111771   ⟸   XM_021256112
- Peptide Label: isoform X11
RefSeq Acc Id: XP_021111767   ⟸   XM_021256108
- Peptide Label: isoform X7
RefSeq Acc Id: XP_021111770   ⟸   XM_021256111
- Peptide Label: isoform X10
RefSeq Acc Id: XP_012927779   ⟸   XM_013072325
- Peptide Label: isoform X6
RefSeq Acc Id: XP_012927777   ⟸   XM_013072323
- Peptide Label: isoform X5
RefSeq Acc Id: XP_021111763   ⟸   XM_021256104
- Peptide Label: isoform X3
RefSeq Acc Id: XP_012927774   ⟸   XM_013072320
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021111762   ⟸   XM_021256103
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021111782   ⟸   XM_021256123
- Peptide Label: isoform X16
RefSeq Acc Id: XP_021111781   ⟸   XM_021256122
- Peptide Label: isoform X15
RefSeq Acc Id: XP_012927784   ⟸   XM_013072330
- Peptide Label: isoform X17


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013899 ENTREZGENE
Ensembl Transcript ENSHGLT00000019600 ENTREZGENE
NCBI Gene Eif4g1 ENTREZGENE