Glis3 (GLIS family zinc finger 3) - Rat Genome Database

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Gene: Glis3 (GLIS family zinc finger 3) Heterocephalus glaber
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Symbol: Glis3
Name: GLIS family zinc finger 3
RGD ID: 18909819
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); transcription by RNA polymerase II (ortholog); ASSOCIATED WITH angle-closure glaucoma (ortholog); aniridia (ortholog); chromosome 9p deletion syndrome (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Zinc finger protein GLIS3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247368,555,916 - 9,004,996 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247368,552,143 - 9,030,122 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Glis3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247368,555,916 - 9,004,996 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247368,552,143 - 9,030,122 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GLIS3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3893,824,127 - 4,490,465 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl93,824,127 - 4,348,392 (-)EnsemblGRCh38hg38GRCh38
GRCh3793,824,127 - 4,300,068 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3693,814,128 - 4,290,035 (-)NCBINCBI36Build 36hg18NCBI36
Build 3493,817,676 - 4,142,183NCBI
Celera93,742,092 - 4,217,855 (-)NCBICelera
Cytogenetic Map9p24.2NCBI
HuRef93,779,368 - 4,255,081 (-)NCBIHuRef
CHM1_193,824,581 - 4,300,359 (-)NCBICHM1_1
T2T-CHM13v2.093,828,153 - 4,494,104 (-)NCBIT2T-CHM13v2.0
Glis3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391928,236,251 - 28,657,684 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1928,236,251 - 28,657,477 (-)EnsemblGRCm39 Ensembl
GRCm381928,258,851 - 28,680,265 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1928,258,851 - 28,680,077 (-)EnsemblGRCm38mm10GRCm38
MGSCv371928,336,938 - 28,754,567 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361928,328,970 - 28,606,417 (-)NCBIMGSCv36mm8
Celera1929,038,139 - 29,454,917 (-)NCBICelera
Cytogenetic Map19C1NCBI
cM Map1922.88NCBI
Glis3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81235,389,567 - 235,809,416 (-)NCBIGRCr8
mRatBN7.21225,976,029 - 226,395,849 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1225,976,326 - 226,395,899 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01246,380,816 - 246,564,385 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1246,380,889 - 246,785,360 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01253,622,178 - 254,039,761 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41231,881,983 - 232,292,288 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.41232,291,906 - 232,306,168 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1223,130,737 - 223,177,831 (-)NCBICelera
Cytogenetic Map1q52NCBI
Glis3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554348,145,053 - 8,573,537 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554348,140,965 - 8,581,889 (-)NCBIChiLan1.0ChiLan1.0
GLIS3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211120,266,621 - 120,758,261 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19120,272,559 - 120,764,199 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v093,633,416 - 4,125,420 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.193,823,567 - 4,314,140 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl93,827,712 - 4,300,658 (-)Ensemblpanpan1.1panPan2
GLIS3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1192,278,521 - 92,824,303 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl192,282,164 - 92,734,468 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha192,750,809 - 93,296,691 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0192,826,097 - 93,377,711 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl192,829,077 - 93,272,131 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1192,463,220 - 93,009,736 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0192,186,805 - 92,732,955 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0192,951,661 - 93,498,143 (-)NCBIUU_Cfam_GSD_1.0
Glis3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947139,885,832 - 140,319,439 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936503853,436 - 1,287,160 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936503989,817 - 1,283,781 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GLIS3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1217,629,883 - 218,117,267 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11217,572,604 - 218,117,629 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21243,782,562 - 243,981,149 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GLIS3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11275,244,685 - 75,726,554 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603863,577,873 - 64,060,383 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004838229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004838230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013069690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013069691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021252774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021252776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01012401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01012402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01012403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01012404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01012405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01012406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01012407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01012408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01012409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01012410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01012411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH173388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000021325   ⟹   ENSHGLP00000021122
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247368,555,916 - 9,004,996 (-)Ensembl
RefSeq Acc Id: XM_004838229   ⟹   XP_004838286
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247368,552,143 - 9,005,090 (-)NCBI
RefSeq Acc Id: XM_004838230   ⟹   XP_004838287
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247368,552,143 - 9,030,122 (-)NCBI
RefSeq Acc Id: XM_013069690   ⟹   XP_012925144
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247368,552,143 - 9,005,090 (-)NCBI
RefSeq Acc Id: XM_013069691   ⟹   XP_012925145
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247368,552,143 - 9,004,767 (-)NCBI
RefSeq Acc Id: XM_021252774   ⟹   XP_021108433
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247368,577,607 - 9,005,090 (-)NCBI
RefSeq Acc Id: XM_021252776   ⟹   XP_021108435
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247368,552,143 - 9,005,090 (-)NCBI
RefSeq Acc Id: XP_004838287   ⟸   XM_004838230
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021108435   ⟸   XM_021252776
- Peptide Label: isoform X5
RefSeq Acc Id: XP_012925144   ⟸   XM_013069690
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004838286   ⟸   XM_004838229
- Peptide Label: isoform X1
- UniProtKB: G5C4T1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012925145   ⟸   XM_013069691
- Peptide Label: isoform X6
RefSeq Acc Id: XP_021108433   ⟸   XM_021252774
- Peptide Label: isoform X3
Ensembl Acc Id: ENSHGLP00000021122   ⟸   ENSHGLT00000021325


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015091 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000021325 ENTREZGENE
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro GLI-like UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report hgl:101712203 UniProtKB/TrEMBL
NCBI Gene Glis3 ENTREZGENE
PANTHER PTHR45718 UniProtKB/TrEMBL
  PTHR45718:SF1 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt G5C4T1 ENTREZGENE, UniProtKB/TrEMBL