Sdf2l1 (stromal cell derived factor 2 like 1) - Rat Genome Database

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Gene: Sdf2l1 (stromal cell derived factor 2 like 1) Heterocephalus glaber
Analyze
Symbol: Sdf2l1
Name: stromal cell derived factor 2 like 1
RGD ID: 18909817
Description: ENCODES a protein that exhibits ATPase binding (ortholog); protein-folding chaperone binding (ortholog); INVOLVED IN cellular response to misfolded protein (ortholog); ERAD pathway (ortholog); regulation of apoptotic process (ortholog); PARTICIPATES IN codeine and morphine pharmacodynamics pathway; codeine and morphine pharmacokinetics pathway; etoposide pharmacodynamics pathway; ASSOCIATED WITH chromosome 22q11.2 deletion syndrome, distal (ortholog); Crohn's disease (ortholog); DiGeorge syndrome (ortholog); FOUND IN membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Stromal cell-derived factor 2-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247471,195,055 - 1,197,105 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247471,195,043 - 1,197,105 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625  


Genomics

Comparative Map Data
Sdf2l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247471,195,055 - 1,197,105 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247471,195,043 - 1,197,105 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SDF2L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382221,642,302 - 21,644,299 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2221,642,302 - 21,644,299 (+)EnsemblGRCh38hg38GRCh38
GRCh372221,996,591 - 21,998,588 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362220,326,542 - 20,328,588 (+)NCBINCBI36Build 36hg18NCBI36
Build 342220,321,095 - 20,323,142NCBI
Celera225,814,082 - 5,816,128 (+)NCBICelera
Cytogenetic Map22q11.21NCBI
HuRef224,954,363 - 4,956,409 (+)NCBIHuRef
CHM1_12221,996,740 - 21,998,786 (+)NCBICHM1_1
T2T-CHM13v2.02222,055,802 - 22,057,799 (+)NCBIT2T-CHM13v2.0
Sdf2l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391616,948,002 - 16,950,247 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1616,948,002 - 16,950,247 (-)EnsemblGRCm39 Ensembl
GRCm381617,130,138 - 17,132,383 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1617,130,138 - 17,132,383 (-)EnsemblGRCm38mm10GRCm38
MGSCv371617,130,231 - 17,132,476 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361617,043,701 - 17,045,928 (-)NCBIMGSCv36mm8
Celera1617,702,932 - 17,705,177 (-)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1610.62NCBI
Sdf2l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81197,376,878 - 97,379,120 (+)NCBIGRCr8
mRatBN7.21183,872,659 - 83,874,902 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1183,872,659 - 83,874,902 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1192,596,386 - 92,598,629 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01185,257,528 - 85,259,771 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01184,311,108 - 84,313,351 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01188,122,271 - 88,124,513 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1188,122,271 - 88,124,513 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01191,174,846 - 91,177,088 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41185,878,093 - 85,880,335 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1182,628,352 - 82,630,594 (+)NCBICelera
Cytogenetic Map11q23NCBI
Sdf2l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544217,468,302 - 17,470,296 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544217,468,302 - 17,470,296 (-)NCBIChiLan1.0ChiLan1.0
SDF2L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22331,187,488 - 31,189,507 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12233,736,220 - 33,738,236 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0223,764,899 - 3,766,932 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12220,248,566 - 20,250,607 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2220,248,566 - 20,250,607 (+)Ensemblpanpan1.1panPan2
SDF2L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12630,918,788 - 30,920,873 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2630,918,811 - 30,920,868 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2630,876,092 - 30,878,133 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02632,324,590 - 32,326,641 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2632,324,324 - 32,326,636 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12630,373,930 - 30,375,976 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02629,997,658 - 29,999,698 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02631,087,579 - 31,089,621 (+)NCBIUU_Cfam_GSD_1.0
Sdf2l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118140,702,130 - 140,704,142 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366192,049,922 - 2,051,944 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366192,049,920 - 2,051,944 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SDF2L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1450,246,710 - 50,251,642 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11450,249,607 - 50,251,636 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21453,700,127 - 53,702,117 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SDF2L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1194,465,795 - 4,467,882 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl194,465,797 - 4,467,761 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660852,529,331 - 2,532,763 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000013171   ⟹   ENSHGLP00000013034
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247471,195,055 - 1,197,105 (+)Ensembl
RefSeq Acc Id: XM_004843315   ⟹   XP_004843372
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247471,195,043 - 1,197,105 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004843372 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB09776 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000013034
  ENSHGLP00000051876
  ENSHGLP00100034051
GenBank Protein JAN96601 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004843372   ⟸   XM_004843315
- UniProtKB: G5BKG5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000013034   ⟸   ENSHGLT00000013171


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009319 Ensembl, ENTREZGENE
  ENSHGLG00000047159 UniProtKB/TrEMBL
  ENSHGLG00100041787 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000013171 ENTREZGENE
  ENSHGLT00000052432 UniProtKB/TrEMBL
  ENSHGLT00100067345 UniProtKB/TrEMBL
Gene3D-CATH 2.80.10.50 UniProtKB/TrEMBL
InterPro MIR_dom_sf UniProtKB/TrEMBL
  MIR_motif UniProtKB/TrEMBL
KEGG Report hgl:101704169 UniProtKB/TrEMBL
NCBI Gene Sdf2l1 ENTREZGENE
PANTHER STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN UniProtKB/TrEMBL
  STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN 1 UniProtKB/TrEMBL
Pfam MIR UniProtKB/TrEMBL
PROSITE MIR UniProtKB/TrEMBL
SMART MIR UniProtKB/TrEMBL
Superfamily-SCOP SSF82109 UniProtKB/TrEMBL
UniProt G5BKG5 ENTREZGENE, UniProtKB/TrEMBL