Pnma2 (PNMA family member 2) - Rat Genome Database

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Gene: Pnma2 (PNMA family member 2) Heterocephalus glaber
Analyze
Symbol: Pnma2
Name: PNMA family member 2
RGD ID: 18908922
Description: FOUND IN nucleolus (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: paraneoplastic antigen Ma2; paraneoplastic Ma antigen 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475821,350,675 - 21,355,715 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475821,322,368 - 21,355,720 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleolus  (IEA)
nucleus  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
Pnma2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475821,350,675 - 21,355,715 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475821,322,368 - 21,355,720 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PNMA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38826,504,701 - 26,513,872 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl826,504,701 - 26,514,092 (-)EnsemblGRCh38hg38GRCh38
GRCh37826,362,217 - 26,371,388 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36826,418,113 - 26,427,400 (-)NCBINCBI36Build 36hg18NCBI36
Celera825,324,618 - 25,333,902 (-)NCBICelera
Cytogenetic Map8p21.2NCBI
HuRef824,907,036 - 24,916,314 (-)NCBIHuRef
CHM1_1826,563,803 - 26,573,090 (-)NCBICHM1_1
T2T-CHM13v2.0826,781,276 - 26,790,451 (-)NCBIT2T-CHM13v2.0
Pnma2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391467,139,038 - 67,157,512 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1467,148,619 - 67,158,472 (+)EnsemblGRCm39 Ensembl
GRCm381466,901,589 - 66,920,063 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1466,911,170 - 66,921,023 (+)EnsemblGRCm38mm10GRCm38
MGSCv371467,530,045 - 67,538,898 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361465,869,515 - 65,874,167 (+)NCBIMGSCv36mm8
Celera1464,664,973 - 64,673,798 (+)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1434.6NCBI
Pnma2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81545,287,445 - 45,296,340 (+)NCBIGRCr8
mRatBN7.21541,111,942 - 41,119,649 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1541,112,009 - 41,121,427 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1542,977,486 - 42,985,039 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01544,127,698 - 44,135,253 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01542,572,270 - 42,579,929 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01543,581,874 - 43,589,680 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1543,582,020 - 43,589,680 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01548,006,292 - 48,014,067 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41546,452,913 - 46,460,573 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11546,473,585 - 46,474,680 (+)NCBI
Celera1540,779,534 - 40,786,898 (+)NCBICelera
Cytogenetic Map15p12NCBI
Pnma2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540349,183,280 - 49,184,855 (-)NCBIChiLan1.0ChiLan1.0
PNMA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2745,038,107 - 45,047,393 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1820,752,210 - 20,761,495 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0825,777,591 - 25,786,877 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1822,684,517 - 22,693,903 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl822,687,494 - 22,688,588 (-)Ensemblpanpan1.1panPan2
PNMA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12531,038,519 - 31,045,874 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2531,042,477 - 31,043,571 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2531,626,722 - 31,634,100 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02531,238,188 - 31,245,570 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2531,238,204 - 31,245,591 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12531,172,868 - 31,180,236 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02531,043,957 - 31,051,322 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02531,210,416 - 31,217,798 (+)NCBIUU_Cfam_GSD_1.0
Pnma2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049439,170,548 - 9,176,853 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936757423,220 - 429,447 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PNMA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1410,422,331 - 10,428,389 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11410,422,325 - 10,428,389 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21411,587,498 - 11,593,567 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PNMA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1824,620,551 - 24,625,695 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl824,619,441 - 24,620,535 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605217,533,473 - 17,542,911 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000007047   ⟹   ENSHGLP00000006963
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475821,350,675 - 21,355,715 (-)Ensembl
RefSeq Acc Id: XM_004848372   ⟹   XP_004848429
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475821,348,464 - 21,355,720 (-)NCBI
RefSeq Acc Id: XM_004848373   ⟹   XP_004848430
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475821,348,464 - 21,355,636 (-)NCBI
RefSeq Acc Id: XM_004848374   ⟹   XP_004848431
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475821,348,464 - 21,355,712 (-)NCBI
RefSeq Acc Id: XR_002396336
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475821,346,671 - 21,355,720 (-)NCBI
RefSeq Acc Id: XR_002396337
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475821,322,368 - 21,355,720 (-)NCBI
RefSeq Acc Id: XR_002396338
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475821,346,671 - 21,355,720 (-)NCBI
RefSeq Acc Id: XP_004848429   ⟸   XM_004848372
- UniProtKB: A0A0P6J439 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004848431   ⟸   XM_004848374
- UniProtKB: A0A0P6J439 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004848430   ⟸   XM_004848373
- UniProtKB: A0A0P6J439 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000006963   ⟸   ENSHGLT00000007047


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005086 Ensembl, ENTREZGENE
  ENSHGLG00000045190 UniProtKB/TrEMBL
  ENSHGLG00100036729 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000007047 ENTREZGENE
  ENSHGLT00000049171 UniProtKB/TrEMBL
  ENSHGLT00000049397 UniProtKB/TrEMBL
  ENSHGLT00000076518 UniProtKB/TrEMBL
  ENSHGLT00000086507 UniProtKB/TrEMBL
  ENSHGLT00100027971 UniProtKB/TrEMBL
  ENSHGLT00100067411 UniProtKB/TrEMBL
  ENSHGLT00100074460 UniProtKB/TrEMBL
  ENSHGLT00100079008 UniProtKB/TrEMBL
  ENSHGLT00100088057 UniProtKB/TrEMBL
  ENSHGLT00100089770 UniProtKB/TrEMBL
InterPro PNMA UniProtKB/TrEMBL
  PNMA_C UniProtKB/TrEMBL
  PNMA_N UniProtKB/TrEMBL
KEGG Report hgl:101710074 UniProtKB/TrEMBL
NCBI Gene Pnma2 ENTREZGENE
PANTHER PTHR23095 UniProtKB/TrEMBL
  PTHR23095:SF16 UniProtKB/TrEMBL
Pfam PNMA UniProtKB/TrEMBL
  PNMA_N UniProtKB/TrEMBL
UniProt A0A0P6J439 ENTREZGENE, UniProtKB/TrEMBL