PNMA2 (PNMA family member 2) - Rat Genome Database

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Gene: PNMA2 (PNMA family member 2) Sus scrofa
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Symbol: PNMA2
Name: PNMA family member 2
RGD ID: 14136998
Description: ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleolus (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: paraneoplastic antigen Ma2; paraneoplastic antigen Ma2 homolog; paraneoplastic Ma antigen 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1410,422,331 - 10,428,389 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11410,422,325 - 10,428,389 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21411,587,498 - 11,593,567 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleolus  (IEA)
nucleus  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
PNMA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1410,422,331 - 10,428,389 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11410,422,325 - 10,428,389 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21411,587,498 - 11,593,567 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PNMA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38826,504,701 - 26,513,872 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl826,504,701 - 26,514,092 (-)EnsemblGRCh38hg38GRCh38
GRCh37826,362,217 - 26,371,388 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36826,418,113 - 26,427,400 (-)NCBINCBI36Build 36hg18NCBI36
Celera825,324,618 - 25,333,902 (-)NCBICelera
Cytogenetic Map8p21.2NCBI
HuRef824,907,036 - 24,916,314 (-)NCBIHuRef
CHM1_1826,563,803 - 26,573,090 (-)NCBICHM1_1
T2T-CHM13v2.0826,781,276 - 26,790,451 (-)NCBIT2T-CHM13v2.0
Pnma2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391467,139,038 - 67,157,512 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1467,148,619 - 67,158,472 (+)EnsemblGRCm39 Ensembl
GRCm381466,901,589 - 66,920,063 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1466,911,170 - 66,921,023 (+)EnsemblGRCm38mm10GRCm38
MGSCv371467,530,045 - 67,538,898 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361465,869,515 - 65,874,167 (+)NCBIMGSCv36mm8
Celera1464,664,973 - 64,673,798 (+)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1434.6NCBI
Pnma2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81545,287,445 - 45,296,340 (+)NCBIGRCr8
mRatBN7.21541,111,942 - 41,119,649 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1541,112,009 - 41,121,427 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1542,977,486 - 42,985,039 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01544,127,698 - 44,135,253 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01542,572,270 - 42,579,929 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01543,581,874 - 43,589,680 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1543,582,020 - 43,589,680 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01548,006,292 - 48,014,067 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41546,452,913 - 46,460,573 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11546,473,585 - 46,474,680 (+)NCBI
Celera1540,779,534 - 40,786,898 (+)NCBICelera
Cytogenetic Map15p12NCBI
Pnma2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540349,183,280 - 49,184,855 (-)NCBIChiLan1.0ChiLan1.0
PNMA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2745,038,107 - 45,047,393 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1820,752,210 - 20,761,495 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0825,777,591 - 25,786,877 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1822,684,517 - 22,693,903 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl822,687,494 - 22,688,588 (-)Ensemblpanpan1.1panPan2
PNMA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12531,038,519 - 31,045,874 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2531,042,477 - 31,043,571 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2531,626,722 - 31,634,100 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02531,238,188 - 31,245,570 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2531,238,204 - 31,245,591 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12531,172,868 - 31,180,236 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02531,043,957 - 31,051,322 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02531,210,416 - 31,217,798 (+)NCBIUU_Cfam_GSD_1.0
Pnma2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049439,170,548 - 9,176,853 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936757423,220 - 429,447 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PNMA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1824,620,551 - 24,625,695 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl824,619,441 - 24,620,535 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605217,533,473 - 17,542,911 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pnma2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475821,350,675 - 21,355,715 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475821,322,368 - 21,355,720 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PNMA2
201 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system nervous system reproductive system respiratory system
High
Medium 20
Low 3 2 3 1 1
Below cutoff 3 2 3

Sequence


RefSeq Acc Id: ENSSSCT00000010591   ⟹   ENSSSCP00000010315
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1410,422,331 - 10,428,389 (-)Ensembl
RefSeq Acc Id: XM_005670445   ⟹   XP_005670502
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11410,422,325 - 10,428,389 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013982674   ⟹   XP_013838128
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11410,422,334 - 10,428,386 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013982675   ⟹   XP_013838129
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11410,422,334 - 10,427,514 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021073574   ⟹   XP_020929233
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11410,422,334 - 10,428,386 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005670502   ⟸   XM_005670445
- UniProtKB: F1RJT4 (UniProtKB/TrEMBL),   A0A8D1I4N4 (UniProtKB/TrEMBL),   A0A8D0IJF6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020929233   ⟸   XM_021073574
- UniProtKB: A0A8D1I4N4 (UniProtKB/TrEMBL),   F1RJT4 (UniProtKB/TrEMBL),   A0A8D0IJF6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013838128   ⟸   XM_013982674
- UniProtKB: F1RJT4 (UniProtKB/TrEMBL),   A0A8D1I4N4 (UniProtKB/TrEMBL),   A0A8D0IJF6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013838129   ⟸   XM_013982675
- UniProtKB: F1RJT4 (UniProtKB/TrEMBL),   A0A8D1I4N4 (UniProtKB/TrEMBL),   A0A8D0IJF6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000010315   ⟸   ENSSSCT00000010591

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009659 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005015932 UniProtKB/TrEMBL
  ENSSSCG00015037560 UniProtKB/TrEMBL
  ENSSSCG00025067886 UniProtKB/TrEMBL
  ENSSSCG00030008816 UniProtKB/TrEMBL
  ENSSSCG00035015524 UniProtKB/TrEMBL
  ENSSSCG00040073320 UniProtKB/TrEMBL
  ENSSSCG00045023004 UniProtKB/TrEMBL
  ENSSSCG00050037743 UniProtKB/TrEMBL
  ENSSSCG00055015100 UniProtKB/TrEMBL
  ENSSSCG00060009924 UniProtKB/TrEMBL
  ENSSSCG00065036532 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010591 ENTREZGENE
  ENSSSCT00000010591.3 UniProtKB/TrEMBL
  ENSSSCT00005024917.1 UniProtKB/TrEMBL
  ENSSSCT00015049964.1 UniProtKB/TrEMBL
  ENSSSCT00025093212.1 UniProtKB/TrEMBL
  ENSSSCT00030012040.1 UniProtKB/TrEMBL
  ENSSSCT00035019760.1 UniProtKB/TrEMBL
  ENSSSCT00040101128.1 UniProtKB/TrEMBL
  ENSSSCT00045039246.1 UniProtKB/TrEMBL
  ENSSSCT00050050842.1 UniProtKB/TrEMBL
  ENSSSCT00055029743.1 UniProtKB/TrEMBL
  ENSSSCT00060012832.1 UniProtKB/TrEMBL
  ENSSSCT00065049793.1 UniProtKB/TrEMBL
InterPro PNMA UniProtKB/TrEMBL
  PNMA_C UniProtKB/TrEMBL
  PNMA_N UniProtKB/TrEMBL
KEGG Report ssc:100157132 UniProtKB/TrEMBL
NCBI Gene PNMA2 ENTREZGENE
PANTHER PTHR23095 UniProtKB/TrEMBL
  PTHR23095:SF16 UniProtKB/TrEMBL
Pfam PNMA UniProtKB/TrEMBL
  PNMA_N UniProtKB/TrEMBL
UniProt A0A8D0IJF6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1I4N4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1QRG2_PIG UniProtKB/TrEMBL
  F1RJT4 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:91600 ENTREZGENE