Tmf1 (TATA element modulatory factor 1) - Rat Genome Database

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Gene: Tmf1 (TATA element modulatory factor 1) Heterocephalus glaber
Analyze
Symbol: Tmf1
Name: TATA element modulatory factor 1
RGD ID: 18908215
Description: ENCODES a protein that exhibits nuclear androgen receptor binding (ortholog); nuclear receptor coactivator activity (ortholog); INVOLVED IN acrosome assembly (ortholog); androgen receptor signaling pathway (ortholog); apoptotic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); polycystic ovary syndrome (ortholog); Prostatic Neoplasms (ortholog); FOUND IN endoplasmic reticulum (inferred); Golgi apparatus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: TATA element modulatory factor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247733,587,753 - 3,618,089 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Tmf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247733,587,753 - 3,618,089 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TMF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38369,019,827 - 69,052,333 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl369,019,827 - 69,052,339 (-)EnsemblGRCh38hg38GRCh38
GRCh37369,068,978 - 69,101,484 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36369,151,668 - 69,184,174 (-)NCBINCBI36Build 36hg18NCBI36
Build 34369,155,017 - 69,183,927NCBI
Celera368,997,084 - 69,029,590 (-)NCBICelera
Cytogenetic Map3p14.1NCBI
HuRef369,070,037 - 69,102,555 (-)NCBIHuRef
CHM1_1369,020,189 - 69,052,693 (-)NCBICHM1_1
T2T-CHM13v2.0369,056,599 - 69,089,119 (-)NCBIT2T-CHM13v2.0
Tmf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39697,128,911 - 97,156,107 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl697,129,958 - 97,156,083 (-)EnsemblGRCm39 Ensembl
GRCm38697,151,950 - 97,179,151 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl697,152,997 - 97,179,122 (-)EnsemblGRCm38mm10GRCm38
MGSCv37697,101,944 - 97,129,118 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36697,120,729 - 97,144,587 (-)NCBIMGSCv36mm8
Celera699,011,031 - 99,037,969 (-)NCBICelera
Cytogenetic Map6D3NCBI
cM Map644.89NCBI
Tmf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84131,316,630 - 131,345,666 (-)NCBIGRCr8
mRatBN7.24129,759,952 - 129,785,705 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4129,763,114 - 129,785,629 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4135,187,721 - 135,210,260 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04130,968,762 - 130,991,302 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04129,586,707 - 129,609,247 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04129,521,986 - 129,546,024 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4129,521,991 - 129,544,506 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04194,025,425 - 194,047,939 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44131,876,012 - 131,898,533 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14132,128,029 - 132,143,297 (-)NCBI
Celera4118,639,134 - 118,661,654 (-)NCBICelera
Cytogenetic Map4q34NCBI
Tmf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542118,810,199 - 18,837,761 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542118,810,199 - 18,837,767 (+)NCBIChiLan1.0ChiLan1.0
TMF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2268,970,671 - 69,009,943 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1368,977,647 - 69,014,709 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0368,955,866 - 68,988,353 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1370,322,814 - 70,355,433 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl370,322,814 - 70,355,460 (-)Ensemblpanpan1.1panPan2
TMF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12022,684,150 - 22,716,107 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2022,684,159 - 22,714,432 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2022,658,805 - 22,690,795 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02022,710,043 - 22,742,243 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2022,710,062 - 22,742,235 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12022,403,879 - 22,435,817 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02022,747,315 - 22,779,308 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02022,817,189 - 22,849,345 (+)NCBIUU_Cfam_GSD_1.0
Tmf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049421,577,538 - 1,602,016 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366031,577,486 - 1,602,250 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366031,577,519 - 1,602,022 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1350,444,256 - 50,477,291 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11350,442,017 - 50,477,363 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21355,527,055 - 55,558,194 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12230,048,269 - 30,078,600 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2230,045,685 - 30,078,414 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041136,713,836 - 136,746,704 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004854180   ⟹   XP_004854237
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247733,587,753 - 3,618,089 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004854237 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000019491
  ENSHGLP00000038704
  ENSHGLP00100054491
GenBank Protein JAN99335 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004854237   ⟸   XM_004854180
- UniProtKB: A0A0P6J6V5 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013960 ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100014881 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000019684 ENTREZGENE
  ENSHGLT00000053224 UniProtKB/TrEMBL
  ENSHGLT00100051233 UniProtKB/TrEMBL
InterPro TMF_DNA-bd UniProtKB/TrEMBL
  TMF_TATA-bd UniProtKB/TrEMBL
NCBI Gene Tmf1 ENTREZGENE
PANTHER TATA ELEMENT MODULATORY FACTOR UniProtKB/TrEMBL
  TATA ELEMENT MODULATORY FACTOR TMF1 UniProtKB/TrEMBL
Pfam TMF_DNA_bd UniProtKB/TrEMBL
  TMF_TATA_bd UniProtKB/TrEMBL
UniProt A0A0P6J6V5 ENTREZGENE, UniProtKB/TrEMBL