Ipcef1 (interaction protein for cytohesin exchange factors 1) - Rat Genome Database

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Gene: Ipcef1 (interaction protein for cytohesin exchange factors 1) Heterocephalus glaber
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Symbol: Ipcef1
Name: interaction protein for cytohesin exchange factors 1
RGD ID: 18906899
Description: ENCODES a protein that exhibits protein domain specific binding (ortholog); ASSOCIATED WITH allergic contact dermatitis (ortholog); chromosome 6q24-q25 deletion syndrome (ortholog); lymphoid leukemia (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: interactor protein for cytohesin exchange factors 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247854,017,720 - 4,111,043 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247854,031,811 - 4,114,650 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
Ipcef1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247854,017,720 - 4,111,043 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247854,031,811 - 4,114,650 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
IPCEF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386154,154,496 - 154,356,803 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6154,154,496 - 154,356,803 (-)EnsemblGRCh38hg38GRCh38
GRCh376154,475,631 - 154,677,937 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366154,517,438 - 154,719,592 (-)NCBINCBI36Build 36hg18NCBI36
Celera6155,210,000 - 155,412,269 (-)NCBICelera
Cytogenetic Map6q25.2NCBI
HuRef6152,038,861 - 152,240,888 (-)NCBIHuRef
CHM1_16154,739,273 - 154,941,543 (-)NCBICHM1_1
T2T-CHM13v2.06155,356,475 - 155,558,805 (-)NCBIT2T-CHM13v2.0
Ipcef1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39106,835,779 - 6,973,185 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl106,835,796 - 7,002,478 (-)EnsemblGRCm39 Ensembl
GRCm38106,885,779 - 7,054,782 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl106,885,796 - 7,052,478 (-)EnsemblGRCm38mm10GRCm38
MGSCv37103,323,356 - 3,460,176 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36103,305,631 - 3,434,998 (+)NCBIMGSCv36mm8
Celera106,841,539 - 6,985,563 (-)NCBICelera
Cytogenetic Map10A1NCBI
cM Map101.85NCBI
Ipcef1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8145,654,252 - 45,857,045 (-)NCBIGRCr8
mRatBN7.2143,237,903 - 43,451,735 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl143,269,202 - 43,427,969 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx143,814,288 - 43,887,789 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0149,801,526 - 49,875,023 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0143,889,783 - 43,963,274 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0143,563,457 - 43,743,424 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl143,567,842 - 43,638,161 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0144,895,465 - 44,982,610 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4137,635,767 - 37,711,074 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1137,638,711 - 37,714,025 (-)NCBI
Celera138,917,683 - 38,990,772 (-)NCBICelera
Cytogenetic Map1q11NCBI
Ipcef1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554397,756,126 - 7,836,542 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554397,666,246 - 7,836,481 (+)NCBIChiLan1.0ChiLan1.0
IPCEF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25174,178,764 - 174,380,295 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16172,070,393 - 172,271,889 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06151,975,688 - 152,173,692 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
IPCEF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1144,066,398 - 44,164,173 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl144,070,004 - 44,363,107 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha144,903,482 - 45,072,137 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0144,250,266 - 44,418,577 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl144,253,530 - 44,552,166 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1144,116,738 - 44,285,293 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0143,989,810 - 44,165,495 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0144,545,164 - 44,721,333 (-)NCBIUU_Cfam_GSD_1.0
Ipcef1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946139,344,627 - 139,495,991 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364896,595,888 - 6,662,458 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364896,595,905 - 6,662,509 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IPCEF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl112,506,220 - 12,602,724 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1112,511,612 - 12,602,736 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2114,572,756 - 14,718,904 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IPCEF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11381,686,467 - 81,891,325 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1381,691,775 - 81,882,740 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604054,064,386 - 54,293,218 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000005713   ⟹   ENSHGLP00000005641
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247854,017,720 - 4,078,687 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000005714   ⟹   ENSHGLP00000005642
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247854,031,938 - 4,111,043 (+)Ensembl
RefSeq Acc Id: XM_004856854   ⟹   XP_004856911
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247854,032,203 - 4,114,650 (+)NCBI
RefSeq Acc Id: XM_004856855   ⟹   XP_004856912
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247854,032,348 - 4,114,650 (+)NCBI
RefSeq Acc Id: XM_004856856   ⟹   XP_004856913
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247854,031,811 - 4,114,650 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004856911 (Get FASTA)   NCBI Sequence Viewer  
  XP_004856912 (Get FASTA)   NCBI Sequence Viewer  
  XP_004856913 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000005642
RefSeq Acc Id: XP_004856913   ⟸   XM_004856856
- Peptide Label: isoform X2
- UniProtKB: A0AAX6PQU3 (UniProtKB/TrEMBL),   G5BQ61 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004856911   ⟸   XM_004856854
- Peptide Label: isoform X1
- UniProtKB: A0AAX6PQK1 (UniProtKB/TrEMBL),   G5BQ61 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004856912   ⟸   XM_004856855
- Peptide Label: isoform X2
- UniProtKB: A0AAX6PQU3 (UniProtKB/TrEMBL),   G5BQ61 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000005641   ⟸   ENSHGLT00000005713
Ensembl Acc Id: ENSHGLP00000005642   ⟸   ENSHGLT00000005714


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004122 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000005714 ENTREZGENE
Gene3D-CATH Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) UniProtKB/TrEMBL
InterPro CNKSR UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
NCBI Gene Ipcef1 ENTREZGENE
PANTHER CNK3/IPCEF1 FUSION PROTEIN-RELATED UniProtKB/TrEMBL
  CONNECTOR ENCHANCER OF KINASE SUPPRESSOR OF RAS UniProtKB/TrEMBL
Pfam PF00169 UniProtKB/TrEMBL
PROSITE PH_DOMAIN UniProtKB/TrEMBL
SMART SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
UniProt A0AAX6PQK1 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PQU3 ENTREZGENE, UniProtKB/TrEMBL
  G5BQ61 ENTREZGENE, UniProtKB/TrEMBL