Ptprh (protein tyrosine phosphatase receptor type H) - Rat Genome Database

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Gene: Ptprh (protein tyrosine phosphatase receptor type H) Heterocephalus glaber
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Symbol: Ptprh
Name: protein tyrosine phosphatase receptor type H
RGD ID: 18905756
Description: ENCODES a protein that exhibits cadherin binding (ortholog); INVOLVED IN peptidyl-tyrosine dephosphorylation involved in inactivation of protein kinase activity (ortholog); ASSOCIATED WITH hypertrophic cardiomyopathy (ortholog); nemaline myopathy 5A (ortholog); FOUND IN cytosol (ortholog); microvillus (ortholog); nuclear speck (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: receptor-type tyrosine-protein phosphatase H
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248322,042,358 - 2,071,454 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Ptprh
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248322,042,358 - 2,071,454 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PTPRH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381955,181,247 - 55,209,501 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1955,181,247 - 55,209,506 (-)EnsemblGRCh38hg38GRCh38
GRCh371955,692,615 - 55,720,869 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361960,384,428 - 60,412,654 (-)NCBINCBI36Build 36hg18NCBI36
Build 341960,384,427 - 60,412,654NCBI
Celera1952,733,808 - 52,762,437 (-)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1952,015,608 - 52,044,091 (-)NCBIHuRef
CHM1_11955,686,188 - 55,714,448 (-)NCBICHM1_1
T2T-CHM13v2.01958,275,309 - 58,303,271 (-)NCBIT2T-CHM13v2.0
Ptprh
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3974,551,607 - 4,607,040 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl74,551,611 - 4,607,040 (-)EnsemblGRCm39 Ensembl
GRCm3874,548,608 - 4,604,041 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl74,548,612 - 4,604,041 (-)EnsemblGRCm38mm10GRCm38
MGSCv3774,500,216 - 4,555,643 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3674,152,435 - 4,207,128 (-)NCBIMGSCv36mm8
MGSCv3673,905,427 - 3,958,325 (-)NCBIMGSCv36mm8
Celera74,293,889 - 4,335,235 (-)NCBICelera
Cytogenetic Map7A1NCBI
cM Map72.63NCBI
Ptprh
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8178,272,414 - 78,318,977 (+)NCBIGRCr8
mRatBN7.2169,243,704 - 69,276,294 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl169,242,321 - 69,285,077 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx174,588,649 - 74,635,216 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0183,152,964 - 83,199,525 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0176,304,943 - 76,349,140 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0172,809,935 - 72,859,161 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl172,810,545 - 72,859,161 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0175,692,060 - 75,720,074 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4167,960,564 - 68,004,280 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1168,068,899 - 68,082,221 (+)NCBI
Celera167,851,198 - 67,875,796 (-)NCBICelera
Cytogenetic Map1q12NCBI
Ptprh
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955567992,880 - 1,018,343 (+)NCBIChiLan1.0ChiLan1.0
PTPRH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22061,317,595 - 61,345,486 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11963,046,075 - 63,074,599 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01952,221,813 - 52,249,218 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11960,917,244 - 60,943,528 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1960,917,749 - 60,943,528 (-)Ensemblpanpan1.1panPan2
PTPRH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11102,440,961 - 102,456,368 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1102,440,358 - 102,456,881 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1102,497,447 - 102,513,421 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01103,093,960 - 103,109,941 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1103,094,042 - 103,109,986 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11102,730,889 - 102,746,872 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01102,442,799 - 102,458,433 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01103,206,509 - 103,222,487 (+)NCBIUU_Cfam_GSD_1.0
LOC101977901
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093492,084,951 - 2,101,360 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936886457,873 - 482,345 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTPRH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl659,389,290 - 59,416,233 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1659,389,545 - 59,416,248 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2654,259,269 - 54,275,403 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PTPRH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1647,776,907 - 47,809,359 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl647,777,454 - 47,808,507 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045334,286 - 400,807 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_021245911   ⟹   XP_021101570
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248322,042,358 - 2,071,454 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021101570 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021101570   ⟸   XM_021245911
- UniProtKB: A0AAX6RZP0 (UniProtKB/TrEMBL),   G5BW04 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Gene3D-CATH 6.10.250.2930 UniProtKB/TrEMBL
  Immunoglobulins UniProtKB/TrEMBL
  Protein tyrosine phosphatase superfamily UniProtKB/TrEMBL
InterPro Egfr_JX_dom UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  PTP_cat UniProtKB/TrEMBL
  RTP_Phos/Ushers UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/TrEMBL
  Tyr_Pase_dom UniProtKB/TrEMBL
NCBI Gene Ptprh ENTREZGENE
PANTHER CYTOKINE RECEPTOR UniProtKB/TrEMBL
  PROTEIN TYROSINE PHOSPHATASE, RECEPTOR TYPE, H UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
  Y_phosphatase UniProtKB/TrEMBL
PRINTS PRTYPHPHTASE UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_1 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_PTP UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
  PTPc UniProtKB/TrEMBL
  PTPc_motif UniProtKB/TrEMBL
Superfamily-SCOP (Phosphotyrosine protein) phosphatases II UniProtKB/TrEMBL
  Fibronectin type III UniProtKB/TrEMBL
UniProt A0AAX6RZP0 ENTREZGENE, UniProtKB/TrEMBL
  G5BW04 ENTREZGENE, UniProtKB/TrEMBL